View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17522_high_3 (Length: 404)

Name: NF17522_high_3
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17522_high_3
NF17522_high_3
[»] chr1 (4 HSPs)
chr1 (24-375)||(11780115-11780467)
chr1 (45-217)||(10424593-10424765)
chr1 (45-215)||(1624838-1625008)
chr1 (69-128)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (33-375)||(17158540-17158886)
[»] chr6 (4 HSPs)
chr6 (27-368)||(14977470-14977814)
chr6 (160-331)||(11776308-11776482)
chr6 (160-216)||(9352421-9352477)
chr6 (160-208)||(24353638-24353686)
[»] chr2 (1 HSPs)
chr2 (27-348)||(12101751-12102070)
[»] chr5 (4 HSPs)
chr5 (45-331)||(5781902-5782191)
chr5 (45-331)||(19069420-19069709)
chr5 (57-154)||(17763963-17764060)
chr5 (160-217)||(11724701-11724758)
[»] chr3 (6 HSPs)
chr3 (50-217)||(16311632-16311799)
chr3 (50-217)||(18488416-18488583)
chr3 (50-217)||(18492626-18492793)
chr3 (65-228)||(19829018-19829181)
chr3 (79-217)||(16314023-16314161)
chr3 (79-217)||(18495017-18495155)
[»] chr8 (1 HSPs)
chr8 (61-217)||(17459431-17459587)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 24 - 375
Target Start/End: Original strand, 11780115 - 11780467
Alignment:
Q  24 acatcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacat 123  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11780115 acatcatcgtgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagctcctgtgggcgcgaatgattatgttccacat 11780214  T
Q  124 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  11780215 catccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgcttcactctctcagaatgcatttcatc 11780314  T
Q  224 atgcaa-ccgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgt 322  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  11780315 atgcaatcggggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaacgctgtcaaacacgttatgtagtggaaagctgaaagatgt 11780414  T
Q  323 tgacgacaatgatgtcctaggcatagggaccgtcatatgagaagtaacaactg 375  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11780415 tgacgacaatgatgtcctgggcatagggaccgtcatatgagaagtaacaactg 11780467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 217
Target Start/End: Original strand, 10424593 - 10424765
Alignment:
Q  45 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 144  Q
    ||||||||||||||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |    
T  10424593 gatgaatgtggtacacgctcgtaggaacccttaggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagaga 10424692  T
Q  145 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    |||| || || ||  ||||||||||  |||||||||||||| ||||| | || ||||||||||||||||||||    
T  10424693 catcatccaccacggggttctccaatacctcccgcgatgtcagatgcaattgttccactctctcagaatgcac 10424765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 215
Target Start/End: Original strand, 1624838 - 1625008
Alignment:
Q  45 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 144  Q
    ||||||||||||||| |||| |||| |||||| |||||||| ||||| ||| | |||| ||||  ||| ||||||||||||||  | |||||   ||| |    
T  1624838 gatgaatgtggtacacgctcgtgggaacccttgggactctcgaccagctcccgcgggctcgaactattgtgttccacatcatcataaagcgtaacagtga 1624937  T
Q  145 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgc 215  Q
    |||| || ||     ||||| ||||| |||||||||||||| ||||| |||| || ||||||||| |||||    
T  1624938 catcatccaccgtggggttccccaacacctcccgcgatgtcagatgcaactgttctactctctcaaaatgc 1625008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 30731537 - 30731478
Alignment:
Q  69 gcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatcc 128  Q
    |||||||| |||||||||||||| |||||||||| |  ||||| |||||||||| |||||    
T  30731537 gcacccttgggactctccaccagctcctgtgggctcacatgatcatgttccacaccatcc 30731478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 33 - 375
Target Start/End: Original strand, 17158540 - 17158886
Alignment:
Q  33 tgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgaga 132  Q
    |||| |||||||||||||||| |||||||||||||| | ||||| |||||||||||||  | ||  ||| ||||||||||||| ||||||||||||||||    
T  17158540 tgcttaacaattgatgaatgtagtacatgctcatggtcccccttgggactctccaccaactactaggggtgcgaatgattatgctccacatcatccgaga 17158639  T
Q  133 gcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctcc-actctctcagaatgcacttcatcatgc---a 228  Q
    | || | ||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||   |    
T  17158640 gtgtcgcagtaacatcgtcaaccacagggttctccaactcctcccgcgatatcggatgcgactgatcccactctctcagaatgcacttcatcgtgcgcaa 17158739  T
Q  229 accgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacga 328  Q
    ||  ||||||||||||||||||||||||||| ||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  17158740 actaggaaacaatttcaaacactggcgtagcgagtggcagcttttcactagaaatgttgtcaaacacgttatgtagtggaaagctgaaaggtgttgacga 17158839  T
Q  329 caatgatgtcctaggcatagggaccgtcatatgagaagtaacaactg 375  Q
    |||||| ||| | ||||||||||| ||||  ||||||||||||||||    
T  17158840 caatgacgtcttgggcatagggactgtcaactgagaagtaacaactg 17158886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 368
Target Start/End: Complemental strand, 14977814 - 14977470
Alignment:
Q  27 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcat 126  Q
    ||||| |||| |||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||| | |||  |||||||||||||||||||||||    
T  14977814 tcatcatgctaaacaatggatgaatgtggaacatgctcatgggaacccttgggactctccaccagctcccgcggggtcgaatgattatgttccacatcat 14977715  T
Q  127 ccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat- 225  Q
      || ||||| | |||||||||||||||     || ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |     
T  14977714 aagatagcgtagcagtaacatcgtcaaccgttgggatctgcacctcctcccgcgatgtcggatgcgactgctccactctctcggaatgcacgtcatcgtg 14977615  T
Q  226 -gcaac-cgggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgtt 323  Q
     |||||  |||| ||||  |||| |||||| ||||||  | ||| || ||||||||||||  | ||||||| ||| || | ||| ||||| |||||||||    
T  14977614 cgcaactggggacacaaactcaatcactggtgtagcttctggcaacttctcactagaaatactatcaaacatgttgtgtaatgggaagctaaaagatgtt 14977515  T
Q  324 gacgacaatgatgtcctaggcatagggaccgtcatatgagaagta 368  Q
    || ||||| || ||||| |||| ||||||| |||| |||||||||    
T  14977514 gatgacaaagacgtcctgggcacagggaccatcatctgagaagta 14977470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 160 - 331
Target Start/End: Original strand, 11776308 - 11776482
Alignment:
Q  160 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatg--caac-cgggaaacaatttcaaacactggcgt 256  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||  ||||  |||||||||  || |||||||| ||    
T  11776308 ggttctccaactcctcccgcgatgactgatgcaactgctccactctctcagaatgcacatcatcgtgcacaacaggggaaacaacctctaacactggtgt 11776407  T
Q  257 agctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 331  Q
    | |  || ||| |||||||  |||||| ||||||||| | ||||| | |||||||||||||||  ||||||||||    
T  11776408 aacatgtggcaactcctcatgagaaattttgtcaaacgcattatgtaatggaaagctgaaagagtttgacgacaa 11776482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 9352421 - 9352477
Alignment:
Q  160 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgca 216  Q
    ||||||||||| |||| ||||||||| || || |||| |||||||||||||||||||    
T  9352421 ggttctccaacacctctcgcgatgtcagacgcaactgttccactctctcagaatgca 9352477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 24353638 - 24353686
Alignment:
Q  160 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctc 208  Q
    |||||||||||||||||||||||||| ||||| |||||| | |||||||    
T  24353638 ggttctccaactcctcccgcgatgtctgatgcaactgcttcgctctctc 24353686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 27 - 348
Target Start/End: Complemental strand, 12102070 - 12101751
Alignment:
Q  27 tcatcttgctcaacaattgatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattat----gttccaca 122  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||||    ||||||||    
T  12102070 tcatcgtgctcaacaattgatgaatgtggtacatgctcataggcacccttgggactctccaccagctcccgggggcgcgaatgattatatatgttccaca 12101971  T
Q  123 tcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcat 222  Q
    |         |  | | ||||||||||||| | |   ||||||||||||||||||||||||||| ||| |  |||||| ||||||||| |||||| ||||    
T  12101970 t---------gtatcgtagtaacatcgtcagccatggggttctccaactcctcccgcgatgtcgaatgtgtttgctccgctctctcaggatgcacgtcat 12101880  T
Q  223 catgcaacc---gggaaacaatttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaaga 319  Q
    | ||||      |||||| ||||||||||||| | || ||| || | |||||||| |||||||| |||| |||||||||||| |||||||||||||||||    
T  12101879 cgtgcacaattggggaaataatttcaaacactcgtgttgcttgtggtagctcctcgctagaaatattgttaaacacgttatgtagtggaaagctgaaaga 12101780  T
Q  320 tgttgacgacaatgatgtcctaggcatag 348  Q
    ||||||||||||||| ||| |||||||||    
T  12101779 tgttgacgacaatgacgtcataggcatag 12101751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 5781902 - 5782191
Alignment:
Q  45 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 144  Q
    |||||| ||| |||| ||||||||| |||||| |||||||||||||| ||| | |||  ||||||||| |||||||||||||| || || ||   |||||    
T  5781902 gatgaacgtgatacacgctcatgggaacccttgggactctccaccagctcccgcgggatcgaatgattgtgttccacatcatcagaaagtgtaacagtaa 5782001  T
Q  145 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat 241  Q
    |||| || ||    |||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||| ||||| |  |||||  |||||||||     
T  5782002 catcatccaccgtgtggttctccaactccttccgcgatgtctgatgcaactgctcctctctctcagaatgcacgtcatcgtgcgcaacaagggaaacaac 5782101  T
Q  242 ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 331  Q
     || ||||||||||||||   | |||||||||||  ||||||  | |  ||||| || || | |||||||||||||||  ||||||||||    
T  5782102 ctctaacactggcgtagcacatggcagctcctcaggagaaattctattgaacacattgtgtaatggaaagctgaaagagtttgacgacaa 5782191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 331
Target Start/End: Original strand, 19069420 - 19069709
Alignment:
Q  45 gatgaatgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaa 144  Q
    |||||||||| || | ||||||||  |||||| |||||||||||||| ||||| |||  ||||||||| |||||||||||||  || || ||   |||||    
T  19069420 gatgaatgtgatatacgctcatggaaacccttgggactctccaccagctcctgcgggatcgaatgattgtgttccacatcattagaaagggtaacagtaa 19069519  T
Q  145 catcgtcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcat--gcaac-cgggaaacaat 241  Q
    |||| || ||     |||||||||||||||| ||||||||| ||||| || ||||| |||||||||||||||| ||||| |  |||||  |||||| ||     
T  19069520 catcttccaccgtggggttctccaactcctctcgcgatgtctgatgcaaccgctcctctctctcagaatgcacgtcatcgtgcgcaacaggggaaataac 19069619  T
Q  242 ttcaaacactggcgtagctagtagcagctcctcactagaaatgttgtcaaacacgttatgcagtggaaagctgaaagatgttgacgacaa 331  Q
     || ||||||||||||||  || ||||||||| |  |||||| ||||||||| | || || | |||||||||||||||  ||||||||||    
T  19069620 ctctaacactggcgtagcacgtggcagctccttaggagaaattttgtcaaacgcattgtgtaatggaaagctgaaagagtttgacgacaa 19069709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 17764060 - 17763963
Alignment:
Q  57 acatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaac 154  Q
    ||||||||||||| ||||||  ||||||||||||| ||| |   ||   |||||||||||||||||||||| || ||||| | ||||||||| |||||    
T  17764060 acatgctcatgggaacccttgagactctccaccagctcccgccagcttaaatgattatgttccacatcatcagaaagcgtagcagtaacatcatcaac 17763963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 11724758 - 11724701
Alignment:
Q  160 ggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    ||||||||||| |||||||||||||| ||||| | |||||  |||||| |||||||||    
T  11724758 ggttctccaacacctcccgcgatgtcagatgcaattgctctgctctcttagaatgcac 11724701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 16311799 - 16311632
Alignment:
Q  50 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 149  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  16311799 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 16311700  T
Q  150 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  16311699 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 16311632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 18488583 - 18488416
Alignment:
Q  50 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 149  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18488583 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18488484  T
Q  150 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18488483 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18488416  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 18492793 - 18492626
Alignment:
Q  50 atgtggtacatgctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcg 149  Q
    ||||| |||| |||| | || |||||| |||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  |||||     
T  18492793 atgtgatacacgctcgtaggaacccttgggactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatca 18492694  T
Q  150 tcaactacatggttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    || || ||  ||||||||||| |||||||||||||| ||||| | || |||||| ||||| |||||||    
T  18492693 tccaccacggggttctccaacacctcccgcgatgtcagatgcaattgttccactttctcaaaatgcac 18492626  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 65 - 228
Target Start/End: Original strand, 19829018 - 19829181
Alignment:
Q  65 atgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttc 164  Q
    ||||| |||||| |||||||||||||| ||| | |||  ||||||||| |||||||||||||| || || ||   |||||||||||  |||    |||||    
T  19829018 atgggaacccttgggactctccaccagctcccgcgggttcgaatgattgtgttccacatcatcagaaagtgtaacagtaacatcgttcactgtggggttc 19829117  T
Q  165 tccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcacttcatcatgca 228  Q
    ||||||||| || | |||||| | ||| || ||||| |||||||||||||||| ||||| ||||    
T  19829118 tccaactccccctgtgatgtctggtgcaaccgctcctctctctcagaatgcacgtcatcgtgca 19829181  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 16314161 - 16314023
Alignment:
Q  79 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 178  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  16314161 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 16314062  T
Q  179 cgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  16314061 tgatgtcagatgcaattgttccactttctcaaaatgcac 16314023  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 18495155 - 18495017
Alignment:
Q  79 gactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatggttctccaactcctcccg 178  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||| || |||||   ||  ||||| || || ||  ||||||||||| |||||||    
T  18495155 gactctccaccagctcccgtgggcgcgaacgattatattccacatcatcagaaagcgtaacagagacatcatccaccacggggttctccaacacctcccg 18495056  T
Q  179 cgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
     |||||| ||||| | || |||||| ||||| |||||||    
T  18495055 tgatgtcagatgcaattgttccactttctcaaaatgcac 18495017  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 17459587 - 17459431
Alignment:
Q  61 gctcatgggcacccttcggactctccaccagatcctgtgggcgcgaatgattatgttccacatcatccgagagcgttggagtaacatcgtcaactacatg 160  Q
    ||||||||| ||| ||  ||||||||||||  ||| | |||| ||||||||| |||||||||||||  || |||||   ||| |||||||| ||||   |    
T  17459587 gctcatggggaccgttgagactctccaccatctcccgcgggctcgaatgattgtgttccacatcattagaaagcgtaacagtgacatcgtccactatggg 17459488  T
Q  161 gttctccaactcctcccgcgatgtcggatgcgactgctccactctctcagaatgcac 217  Q
    |||||||||||  |||||||||||||||||| | |||||  ||||||| ||||||||    
T  17459487 gttctccaacttttcccgcgatgtcggatgcaattgctctgctctctcggaatgcac 17459431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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