View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_high_5 (Length: 390)
Name: NF17522_high_5
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 3 - 383
Target Start/End: Complemental strand, 41446487 - 41446108
Alignment:
| Q |
3 |
tacatgggttggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttctcattttatatgctgcctcgatgacagttctt |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446487 |
tacatgggttggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttctcattttatatgctgcctcgatgacagttctt |
41446388 |
T |
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| Q |
103 |
ccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacaga |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41446387 |
ccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacaga |
41446288 |
T |
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| Q |
203 |
ttgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatcccaac |
302 |
Q |
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| T |
41446287 |
ttgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatcccaac |
41446188 |
T |
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| Q |
303 |
agtacactttttcatctttctcgatctccaaacactcaaccttgctcataatagattattcccaactcaactttcatctca |
383 |
Q |
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| T |
41446187 |
agtacactttttcatctttctc-atctccaaacactcaaccttgctcataatagattattcccaactcaactttcatctca |
41446108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 3 - 380
Target Start/End: Complemental strand, 41433767 - 41433387
Alignment:
| Q |
3 |
tacatgggttggttgctaattctgtgtttgcagtttttcttgttgctcactcatgttatatcttcttct---cattttatatgctgcctcgatgacagtt |
99 |
Q |
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| T |
41433767 |
tacatgggttggttgctaattctgtgtttgcagtttttcttgtg---cactcatgttagatcttcttcttctcattttttatgccgcctcgatgacagtt |
41433671 |
T |
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| Q |
100 |
cttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtac |
199 |
Q |
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| T |
41433670 |
cttccttgcttcaattcaaagcctctttcaacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtac |
41433571 |
T |
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| Q |
200 |
agattgttgctcatggcttggtgtc----acctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattca |
295 |
Q |
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| T |
41433570 |
agattgttgctcatggcttggtgtttgttacctgtgacacagtttctggtcacgtaattggcttagacctcagctgcaatggccttcaaggtatgattca |
41433471 |
T |
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| Q |
296 |
tcccaacagtacactttttcatctttctcgatctccaaacactcaaccttgctcataatagattattcccaactcaactttcatc |
380 |
Q |
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| T |
41433470 |
tcccaacagtacactttttcatctttctc-atctccaaacactcaaccttgctcataatagattattcccaactcaactttcatc |
41433387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 34230717 - 34230793
Alignment:
| Q |
181 |
caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc |
257 |
Q |
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| T |
34230717 |
caacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggc |
34230793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 34238772 - 34238848
Alignment:
| Q |
181 |
caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc |
257 |
Q |
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| T |
34238772 |
caacatggaaaaatgggactgattgctgctcatggcatggtgtcacgtgtgacaccgtatctggtcacgtcattggc |
34238848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 42130913 - 42130839
Alignment:
| Q |
181 |
caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattg |
255 |
Q |
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|||||||| ||||||| || ||||| ||||||||| ||| ||||| ||||||||| | ||||||||||| |||| |
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| T |
42130913 |
caacatggaaaaatgggactgattgctgctcatggaatggcgtcacgtgtgacacagtctctggtcacgtgattg |
42130839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 12250509 - 12250433
Alignment:
| Q |
181 |
caacatggcaaaatggtacagattgttgctcatggcttggtgtcacctgtgacacaatttctggtcacgtaattggc |
257 |
Q |
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|||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||| | |||||| || |||||| |
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| T |
12250509 |
caacatggcaaaatgggactgattgctgctcatggcatggtgtcacatgtgacacaatctatggtcatgtgattggc |
12250433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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