View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17522_high_6 (Length: 388)

Name: NF17522_high_6
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17522_high_6
NF17522_high_6
[»] chr6 (6 HSPs)
chr6 (25-241)||(14843735-14843952)
chr6 (306-388)||(14844017-14844099)
chr6 (130-162)||(14686711-14686743)
chr6 (24-62)||(19350449-19350487)
chr6 (24-62)||(29976612-29976650)
chr6 (28-65)||(32186185-32186222)
[»] chr5 (3 HSPs)
chr5 (25-241)||(476538-476755)
chr5 (306-388)||(476391-476473)
chr5 (28-239)||(380228-380440)
[»] chr1 (14 HSPs)
chr1 (25-241)||(3544699-3544916)
chr1 (25-230)||(1248183-1248389)
chr1 (306-388)||(3544981-3545063)
chr1 (310-387)||(1248469-1248546)
chr1 (312-372)||(26510243-26510303)
chr1 (310-372)||(13867699-13867761)
chr1 (310-372)||(34352617-34352679)
chr1 (310-372)||(45795418-45795480)
chr1 (25-221)||(5808926-5809123)
chr1 (129-164)||(13867535-13867570)
chr1 (313-348)||(5808799-5808834)
chr1 (129-164)||(45795609-45795644)
chr1 (306-372)||(52691666-52691732)
chr1 (25-61)||(28358396-28358432)
[»] scaffold0043 (2 HSPs)
scaffold0043 (25-241)||(34207-34424)
scaffold0043 (306-388)||(34489-34571)
[»] chr3 (7 HSPs)
chr3 (25-237)||(31675260-31675473)
chr3 (25-230)||(31920949-31921155)
chr3 (306-387)||(31675109-31675190)
chr3 (306-387)||(31921230-31921311)
chr3 (310-372)||(34829613-34829675)
chr3 (310-372)||(40513590-40513652)
chr3 (129-168)||(34829818-34829857)
[»] scaffold0555 (1 HSPs)
scaffold0555 (306-387)||(7847-7928)
[»] chr8 (8 HSPs)
chr8 (310-379)||(6245314-6245383)
chr8 (310-379)||(9510969-9511038)
chr8 (157-228)||(3939543-3939615)
chr8 (306-372)||(25193283-25193349)
chr8 (349-387)||(3939394-3939432)
chr8 (25-63)||(6245593-6245631)
chr8 (30-59)||(15439632-15439661)
chr8 (30-59)||(15530936-15530965)
[»] chr4 (4 HSPs)
chr4 (310-364)||(43516614-43516668)
chr4 (31-168)||(2071939-2072076)
chr4 (25-164)||(43516346-43516485)
chr4 (307-372)||(2071734-2071799)
[»] chr2 (4 HSPs)
chr2 (307-372)||(33584231-33584296)
chr2 (307-365)||(7300876-7300934)
chr2 (310-372)||(11196545-11196607)
chr2 (306-372)||(18844513-18844579)
[»] chr7 (2 HSPs)
chr7 (307-372)||(8753269-8753334)
chr7 (24-62)||(27218719-27218757)


Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 14843735 - 14843952
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14843735 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcg 14843834  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  14843835 tgtctacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagacgtttatttgacttaacgaataacaaaatgtgtacggt 14843934  T
Q  224 ggcagatgtgtttgctct 241  Q
    ||||||||||||||||||    
T  14843935 ggcagatgtgtttgctct 14843952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 14844017 - 14844099
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaacac 388  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14844017 ttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacac 14844099  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 14686711 - 14686743
Alignment:
Q  130 acttacttttggtatgacaggtggcttggtgat 162  Q
    |||||||||||||||||||||||||||||||||    
T  14686711 acttacttttggtatgacaggtggcttggtgat 14686743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 19350487 - 19350449
Alignment:
Q  24 atcatcttggtggaaggaagtagtgaagattagggatgg 62  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  19350487 atcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 29976612 - 29976650
Alignment:
Q  24 atcatcttggtggaaggaagtagtgaagattagggatgg 62  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29976612 atcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 32186222 - 32186185
Alignment:
Q  28 tcttggtggaaggaagtagtgaagattagggatgggat 65  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  32186222 tcttggtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 476755 - 476538
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  476755 tcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcg 476656  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  476655 tgtctacttacttttggtatgacaggtggcttggtgatgtccctcttcgaacaaggtttagacgtttatttgacttaacgaataacaaactgtgtacggt 476556  T
Q  224 ggcagatgtgtttgctct 241  Q
    ||||||||||||||||||    
T  476555 ggcagatgtgtttgctct 476538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 476473 - 476391
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaacac 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  476473 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacac 476391  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 239
Target Start/End: Complemental strand, 380440 - 380228
Alignment:
Q  28 tcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtgtgt 127  Q
    ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||   | || ||  |||||        
T  380440 tcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcgaagcgagtgggggatggttcta 380341  T
Q  128 ctacttacttttggtatgacaggtggcttggtgatgtccctct-cggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggtggc 226  Q
     ||||| ||||||| | ||||||||||| || ||||| ||| | || ||| ||||||| ||||||||||| ||| ||| ||||||  |||| ||||| ||    
T  380340 gtactttcttttggcacgacaggtggctaggcgatgttcctttacgtacacggtttagtcgtttatttgatttagcgactaataagttgtgcacggtcgc 380241  T
Q  227 agatgtgtttgct 239  Q
     ||| ||||||||    
T  380240 tgatatgtttgct 380228  T

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Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 3544699 - 3544916
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3544699 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggcg 3544798  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||    
T  3544799 tgtctacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagacgtttatttaacttaacgaataacaaaatatgtacggt 3544898  T
Q  224 ggcagatgtgtttgctct 241  Q
    ||||||||||||||||||    
T  3544899 ggcagatgtgtttgctct 3544916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 1248183 - 1248389
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  |||||||| |||||      
T  1248183 tcatcttggtggagggaagtagtgaagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatggct 1248282  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||  || |||||||    
T  1248283 tggctacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgactaataagttgagtacggt 1248382  T
Q  224 ggcagat 230  Q
    |||||||    
T  1248383 ggcagat 1248389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 3544981 - 3545063
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaacac 388  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3544981 ttggtagaagagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgacaggtggctttgggagtccaacac 3545063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 1248469 - 1248546
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaaca 387  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||  ||||| |||||||    
T  1248469 tagaggagtgtaggcaattacttaatggtgttgttttgcaatttgatatttctgacaggtggcactgggactccaaca 1248546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 26510243 - 26510303
Alignment:
Q  312 gaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||    
T  26510243 gaggagtgtaggcaattacttgatggtgttgttttgcagtatgatctttctgacaggtggc 26510303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 13867699 - 13867761
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||||||||||||  ||| |||||||||| |||||||||||||||||||||||| ||||||    
T  13867699 tagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 13867761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 34352679 - 34352617
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||||||||||||||||||  ||||||||| ||||||||||||||||||| |||| ||||||    
T  34352679 tagaggagtgtaggcaattaactaatggtgtcgttttgcagtctgatatttatgacaggtggc 34352617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 45795480 - 45795418
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||||||||||||  ||| |||||||||| |||||||||||||||||||||||| ||||||    
T  45795480 tagaggagtgtaggcttttaattaatggtgtcgttttgcagtctgatatttctgacaggtggc 45795418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 5809123 - 5808926
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||| |||| |||||||||||||||||||||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||| ||   |||      
T  5809123 tcatcttagtggcaggaagtagtgaagattagggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtggggggtggca 5809024  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatg-tccctctcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacg 221  Q
    |   ||| | ||||||||||||||||||||||||||||| ||| | | | || |||| | | |||||||| |||||||||  ||||||||||||||||    
T  5809023 ttagtacattcttttggtatgacaggtggcttggtgatgttcctttttgtactaggtatcgtcgtttattggacttaacgtctaataaactgtgtacg 5808926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 13867535 - 13867570
Alignment:
Q  129 tacttacttttggtatgacaggtggcttggtgatgt 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  13867535 tacttacttttggtatgacaggtggcttggtgatgt 13867570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 348
Target Start/End: Complemental strand, 5808834 - 5808799
Alignment:
Q  313 aggagtgtaggcaattacttaatggtgttgttttgc 348  Q
    |||||||||||||||| |||||||||||||||||||    
T  5808834 aggagtgtaggcaattgcttaatggtgttgttttgc 5808799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 45795644 - 45795609
Alignment:
Q  129 tacttacttttggtatgacaggtggcttggtgatgt 164  Q
    ||||||||||||||||||||||||||| ||||||||    
T  45795644 tacttacttttggtatgacaggtggctaggtgatgt 45795609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 52691732 - 52691666
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||| ||||||||||||||  | ||||||| | ||||||||||| |||| ||||||||| ||||||    
T  52691732 ttggtggaggagtgtaggcatcttcttaatgattttgttttgcagactgacatttctgacaggtggc 52691666  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 28358432 - 28358396
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatg 61  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  28358432 tcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 34207 - 34424
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |    
T  34207 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaatggcg 34306  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||    
T  34307 tgtctacttacttttggtatgacaggtggcttggtgatgtccctcttcggacaaggtttagaagtttatttcacttaacgaataacaaactatgtacggt 34406  T
Q  224 ggcagatgtgtttgctct 241  Q
    ||||||||||||||||||    
T  34407 ggcagatgtgtttgctct 34424  T

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Target: scaffold0043; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 34489 - 34571
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaacac 388  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  34489 ttggtagaggagtgtaggcaattacttaatggtgttgttttacagtctgatatttctgacaggtggctttgggagtccaacac 34571  T

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Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 25 - 237
Target Start/End: Complemental strand, 31675473 - 31675260
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | |||||||||||| |    
T  31675473 tcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaatggcg 31675374  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||| |||||| ||| |||    
T  31675373 cgtctacttacttttggtatgataggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagtgaataacaaactgagtatggt 31675274  T
Q  224 ggcagatgtgtttg 237  Q
    ||||||| ||||||    
T  31675273 ggcagatttgtttg 31675260  T

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Target: chr3; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 31920949 - 31921155
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | |||||||||||| |    
T  31920949 tcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaatggcg 31921048  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgtccctc-tcggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggt 223  Q
     ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| |||||| ||| |||    
T  31921049 cgtctacttacttttggtatgataggtggcttggtgatgtccctcttcggacaaggtttagtcgtttatttgacttagcgaataacaaactgagtatggt 31921148  T
Q  224 ggcagat 230  Q
    |||||||    
T  31921149 ggcagat 31921155  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 31675190 - 31675109
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaaca 387  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  31675190 ttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggctttgggagtccaaca 31675109  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 306 - 387
Target Start/End: Original strand, 31921230 - 31921311
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaaca 387  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  31921230 ttggtagaggagtgtaggaaattacttaatggtgtggttttgcagtctgatatttctgacaggtggctttgggagtccaaca 31921311  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 34829675 - 34829613
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34829675 tagaggagtgtaggaaattacttaatggtgttgttttgcagtctgatctttctgacaggtggc 34829613  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 40513590 - 40513652
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||| ||||||    
T  40513590 tagaggagtgtaggctgttaattaatggtgtcgttttgcagtatgatatttctgacaggtggc 40513652  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 34829857 - 34829818
Alignment:
Q  129 tacttacttttggtatgacaggtggcttggtgatgtccct 168  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtgatgtccct 34829818  T

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Target: scaffold0555 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 7928 - 7847
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttgggagtccaaca 387  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7928 ttggtagaggagtgtaggcaattacttaatgttgttgttttgcagtctgatatttctgacaggtggctttgggagtccaaca 7847  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 6245383 - 6245314
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttggga 379  Q
    |||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||  ||||||||||||    
T  6245383 tagatgagtgtaggtaattacttaatggtgttgttttgccgcctgatatttctgacaagtggctttggga 6245314  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 9511038 - 9510969
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggctttggga 379  Q
    ||||||||||||||||||| ||||||||||||||||||||| || |||||| |||| | |||||||||||    
T  9511038 tagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatggctttggga 9510969  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 3939615 - 3939543
Alignment:
Q  157 ggtgatgtccctct-cggacaaggtttagacgtttatttgacttaacgaataataaactgtgtacggtggcag 228  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||| ||| ||| || ||| ||||||||||||    
T  3939615 ggtgatgtccctcttcggacaagatttagtcgtttatttgacttagcgactaacaagctgagtacggtggcag 3939543  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 372
Target Start/End: Complemental strand, 25193349 - 25193283
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||| ||||||||||||||  | ||||||| | |||||||||||||||| ||||||||| ||||||    
T  25193349 ttggtggaggagtgtaggcatcttcttaatgattttgttttgcagtctgacatttctgacaggtggc 25193283  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 3939432 - 3939394
Alignment:
Q  349 agtctgatatttctgactggtggctttgggagtccaaca 387  Q
    ||||||||||||||||| ||||||||||||| |||||||    
T  3939432 agtctgatatttctgacaggtggctttgggattccaaca 3939394  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Complemental strand, 6245631 - 6245593
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatggg 63  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  6245631 tcatcttggtggcgggaagtagtgaagattagggatggg 6245593  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 15439661 - 15439632
Alignment:
Q  30 ttggtggaaggaagtagtgaagattaggga 59  Q
    ||||||||||||||||||||||||||||||    
T  15439661 ttggtggaaggaagtagtgaagattaggga 15439632  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 15530965 - 15530936
Alignment:
Q  30 ttggtggaaggaagtagtgaagattaggga 59  Q
    ||||||||||||||||||||||||||||||    
T  15530965 ttggtggaaggaagtagtgaagattaggga 15530936  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 43516614 - 43516668
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctga 364  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  43516614 tagaggagtgtaggcatttaattaatggtgtcgttttgcagtctgatatttctga 43516668  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 2072076 - 2071939
Alignment:
Q  31 tggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtgtgtcta 130  Q
    ||||||| |||  |||||||||||||||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||||||  ||||| |   ||    
T  2072076 tggtggagggagttagtgaagattagggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacata 2071977  T
Q  131 cttacttttggtatgacaggtggcttggtgatgtccct 168  Q
    |||||||||||| |||||||||| ||||||||| ||||    
T  2071976 cttacttttggtctgacaggtgggttggtgatgcccct 2071939  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 43516346 - 43516485
Alignment:
Q  25 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggtg 124  Q
    ||||||||||||  |||||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  |||||  ||||      
T  43516346 tcatcttggtggcgggaagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggagatggct 43516445  T
Q  125 tgtctacttacttttggtatgacaggtggcttggtgatgt 164  Q
        |||||||||||||||||||| |||||||||||||||    
T  43516446 ctagtacttacttttggtatgacaagtggcttggtgatgt 43516485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Complemental strand, 2071799 - 2071734
Alignment:
Q  307 tggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||||||| |||||| ||||||||| | ||| |||||||||| | ||||||||||||| ||||||    
T  2071799 tggtagaggggtgtagacaattacttgacggttttgttttgcattatgatatttctgacaggtggc 2071734  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 33584231 - 33584296
Alignment:
Q  307 tggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||||| ||| |||| ||||||    
T  33584231 tggtagaggagtgtaggcacttacttaatggtgtttttgtgcagtctgatgtttttgacgggtggc 33584296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 365
Target Start/End: Complemental strand, 7300934 - 7300876
Alignment:
Q  307 tggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgac 365  Q
    ||||||||||||||||  || | ||||||||||||||||||||||||||| ||||||||    
T  7300934 tggtagaggagtgtagataacttcttaatggtgttgttttgcagtctgatgtttctgac 7300876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 11196607 - 11196545
Alignment:
Q  310 tagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||||||||||||||||| |||||||||| |||||||||  | ||||||||||| ||||||    
T  11196607 tagaggagtgtaggcaattaattaatggtgtcgttttgcagcataatatttctgacaggtggc 11196545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 18844513 - 18844579
Alignment:
Q  306 ttggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    ||||| ||||||||||||||  | ||||||| | |||||||| ||||||| ||||||||| ||||||    
T  18844513 ttggtggaggagtgtaggcatcttcttaatgattttgttttgtagtctgacatttctgacaggtggc 18844579  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 8753269 - 8753334
Alignment:
Q  307 tggtagaggagtgtaggcaattacttaatggtgttgttttgcagtctgatatttctgactggtggc 372  Q
    |||||| |||||||||||  |||||| | ||| |||||||||| ||||||||||||||| ||||||    
T  8753269 tggtagtggagtgtaggctcttacttgacggttttgttttgcattctgatatttctgacaggtggc 8753334  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 27218719 - 27218757
Alignment:
Q  24 atcatcttggtggaaggaagtagtgaagattagggatgg 62  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  27218719 atcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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