View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_high_7 (Length: 365)
Name: NF17522_high_7
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 33346067 - 33345710
Alignment:
| Q |
2 |
agtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagt |
101 |
Q |
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| T |
33346067 |
agtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagt |
33345968 |
T |
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| Q |
102 |
ggtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttactggtaggactgttggaattggtgcttatcttg |
201 |
Q |
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| T |
33345967 |
ggtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttaccggtaggactgttggaattggtgcttatcttg |
33345868 |
T |
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| Q |
202 |
ctaggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctc |
301 |
Q |
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| T |
33345867 |
ctaggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctc |
33345768 |
T |
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| Q |
302 |
tcacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatctcact |
359 |
Q |
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| T |
33345767 |
tcacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatctcact |
33345710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 33320944 - 33320592
Alignment:
| Q |
3 |
gtgatggcacatgaattaaaacttgaaagtggagaaaccagatgggttatagataccattgttggcaaagaagatggactgggagttgaaaacttgagtg |
102 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| | |||||| ||||||||||||||||||| |
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| T |
33320944 |
gtgatggcacatgaattaaagattgaaagtggagaaaccagatgggttatagataccattctcggcaaagacgttggactaggagttgaaaacttgagtg |
33320845 |
T |
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| Q |
103 |
gtagtggggccattgctggtgcctattcaagggcatacaaggaaacctttacattgacatatgttactggtaggactgttggaattggtgcttatcttgc |
202 |
Q |
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| T |
33320844 |
gcagtggggccattgccggtgcctattcaagggcatacaaggaaacctttacactaacatatgtgaccggtacaactgttggaattggtgcttatcttgc |
33320745 |
T |
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| Q |
203 |
taggcttgggatgaggtgcatacagaggcttgatcagcctataattcttaccgggttttcagcattaaacaaacttcttggtagggaggtgtacagctct |
302 |
Q |
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||||| |||||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
33320744 |
aaggctggggatgagatgcatacagaggtttgatcagcctatgattcttaccggtttttcagcattaaacaaactccttggtagggaagtgtacagctct |
33320645 |
T |
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| Q |
303 |
cacatgcaacttggtggaccgaaaatcatggcaacaaatggagtcgttcatct |
355 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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| T |
33320644 |
cacatgcaacttggtggatctaaaatcatggcaacaaatggagttgttcatct |
33320592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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