View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17522_high_8 (Length: 364)
Name: NF17522_high_8
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_high_8 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
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| [»] chr5 (2 HSPs) |
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|
| [»] chr4 (4 HSPs) |
| |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 27876646 - 27876295
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876646 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
27876547 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27876546 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
27876447 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27876446 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaat |
27876347 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27876346 |
ccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacc |
27876295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 26978602 - 26978486
Alignment:
| Q |
226 |
tagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtga |
325 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26978602 |
tagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaatccaaagaaagtga |
26978503 |
T |
|
| Q |
326 |
ttcttctgaagctgaac |
342 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26978502 |
ttcttctgaagctgaac |
26978486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 92 - 275
Target Start/End: Complemental strand, 8481557 - 8481374
Alignment:
| Q |
92 |
gatgtacaactcccaagaaagaacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggat |
191 |
Q |
| |
|
|||||||| ||||||||| ||||| ||| || |||||||||| |||||||| |||||||||||| |||||| | |||||||||| | |||||||| |
|
|
| T |
8481557 |
gatgtacatctcccaagacagaacaaagacagatccaaagtctaaaaaatgtatattcttgggttatactgacaagatgaaggggtatcgcttgtgggat |
8481458 |
T |
|
| Q |
192 |
cccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
275 |
Q |
| |
|
|||||| |||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8481457 |
cccactattcgcaagcttgttgttggcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
8481374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 18148970 - 18148813
Alignment:
| Q |
184 |
tgtgggatcccactgcccgcaaggttgttgttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaaga |
283 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||| || |||||||||||||| ||||||||| || | |||||||| ||||| |||| ||||| ||||| |
|
|
| T |
18148970 |
tgtgagattccactacccgcaaggttgttgttatcatggatgtagtctttgtagaaaatgagttgtagagtgagcataaaaaagacaacactttcaaaga |
18148871 |
T |
|
| Q |
284 |
gactgctattgtgcagatggaagaaaaatccaaagaaagtgattcttctgaagctgaa |
341 |
Q |
| |
|
|| ||| || ||||| ||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
18148870 |
gattgcaatagtgcatatggaagaaaaattcaaggaaagtgattcttctgaagctgaa |
18148813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 41720790 - 41721141
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41720790 |
tgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
41720889 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41720890 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
41720989 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41720990 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaat |
41721089 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41721090 |
ccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacc |
41721141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 34354390 - 34354741
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34354390 |
tgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctacatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagacag |
34354489 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
34354490 |
aacgaagttggacccaaagttcagaaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttatt |
34354589 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34354590 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctataatgcagatggaagaaaaat |
34354689 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |||||||||||| |
|
|
| T |
34354690 |
ccaaagaaagtgattcttctgaagctgaaccgatgcacggagaacaagaacc |
34354741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 42268283 - 42268634
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42268283 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaag |
42268382 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42268383 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
42268482 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42268483 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
42268582 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42268583 |
ccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacc |
42268634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 48699758 - 48699407
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48699758 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
48699659 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48699658 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
48699559 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48699558 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctatagtgcagatggaagaaaaat |
48699459 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48699458 |
ccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacc |
48699407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 30948120 - 30947769
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30948120 |
tgaagacaccaatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
30948021 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30948020 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
30947921 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
|
|
| T |
30947920 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttttaaagagactgctattctgcagatagaagaaaaat |
30947821 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30947820 |
ccaaagaaagtgattcttctgaagctgaatcggtgcacgaagaacaagaacc |
30947769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 2001257 - 2001521
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||| ||||||||||| | |||| || || ||| |||||||| ||| |||||||||||||||| |
|
|
| T |
2001257 |
tgaaaacaccaatggagatttggaacggaaagccacctgattattcttccttatatgtgttcggatgtattgtgtacgcaatgaacaactcccaagaaag |
2001356 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||| || | || ||||||||||| || ||||| ||||||||||||| |||||| || |||||||||| | |||||||||||||||| | |||| ||||| |
|
|
| T |
2001357 |
aacaaaactagatccaaagtctagaaattgtatattcttgggttatgctgacaacgtgaaggggtatcgcttgtgggatcccactgctcacaagcttgtt |
2001456 |
T |
|
| Q |
213 |
gttagcaggg--atgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
275 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
2001457 |
gttagcagagatatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
2001521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 5821212 - 5820861
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5821212 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaag |
5821113 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5821112 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
5821013 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5821012 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
5820913 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5820912 |
ccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacc |
5820861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 2815200 - 2814882
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
2815200 |
tgaagactcctatggagatgtggaaaggaaagccagtagattattcttctctacatgtgtttggttgtcctgtgtatgtgatgtacaactctcaagaaag |
2815101 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
2815100 |
aacaaagttggacccaaagtctaagaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtggggtcccactgcccgcaaggttgtt |
2815001 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2815000 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcatttctaaagagactgctatagtgcagatggaagaaaaat |
2814901 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttc |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2814900 |
ccaaagaaagtgattcttc |
2814882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 42587336 - 42587593
Alignment:
| Q |
18 |
acaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaagaacga |
117 |
Q |
| |
|
||||| |||||||| ||||| ||||||||| ||||||||||| | ||||| || || ||| ||||||||| ||||||||||||||||||||||| | |
|
|
| T |
42587336 |
acaccaatggagatttggaacggaaagccacctgattattcttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaagaacaa |
42587435 |
T |
|
| Q |
118 |
agttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgttgttag |
217 |
Q |
| |
|
|| | || ||||||||||| |||||||| ||||||||||||| |||||| || || ||||||| | |||||||||||||||| | |||| |||||||||| |
|
|
| T |
42587436 |
agctagatccaaagtctagaaaatgtatattcttgggttatgctgacaacgtgaaagggtatcgcttgtgggatcccactgctcacaagcttgttgttag |
42587535 |
T |
|
| Q |
218 |
cagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
275 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
42587536 |
cagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
42587593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 827859 - 828210
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
827859 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
827958 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
827959 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactacccgcaaggttgtt |
828058 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
312 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
828059 |
gttagcagggatctagtctttgcagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaat |
828158 |
T |
|
| Q |
313 |
ccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
828159 |
ccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacc |
828210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 9442029 - 9441677
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9442029 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtgtttggttgtcctgtgtatgtgatgtacaactcccaagaaag |
9441930 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9441929 |
aacgaagttggacccaaagtccaggaaatgtatcttcttgggttatgctgacaatgttaaggggtatcgcctgtgggatcccactgcccgcaaggttgtt |
9441830 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgc-agaaaatgaactgcaaagtgagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaa |
311 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9441829 |
gttagcagggatgtagtctttgcaagaaaatgaactgcaaagtaagcagaaaaatgacagcacttctaaagagactgctattgtgcagatggaagaaaaa |
9441730 |
T |
|
| Q |
312 |
tccaaagaaagtgattcttctgaagctgaactggtgcacgaagaacaagaacc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9441729 |
tccaaagaaagtgattcttctgaagctgaaccggtgcacgaagaacaagaacc |
9441677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 24596425 - 24596163
Alignment:
| Q |
13 |
tgaagacaccgatggagatgtggaaaggaaagccagtagattattcttctctgcatgtttttggttgtcctgtgtacgtgatgtacaactcccaagaaag |
112 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||| ||||||||||| | ||||| || || ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
24596425 |
tgaaaacaccaatggagatttggaacggaaagccacctgattattcttccttacatgtgttcggatgtactgtgtacgcaatgtacaactcccaagaaag |
24596326 |
T |
|
| Q |
113 |
aacgaagttggacccaaagtctaggaaatgtatcttcttgggttatgttgacaatgttaaggggtatctcctgtgggatcccactgcccgcaaggttgtt |
212 |
Q |
| |
|
||| ||| | || ||||||||||| |||||||| ||||||||||||| |||||| || || ||||||| | | |||||||||||||| | |||| ||||| |
|
|
| T |
24596325 |
aacaaagctagatccaaagtctagaaaatgtatattcttgggttatgctgacaacgtgaaagggtatcgcttatgggatcccactgctcacaagcttgtt |
24596226 |
T |
|
| Q |
213 |
gttagcagggatgtagtctttgcagaaaatgaactgcaaagtgagcagaaaaatgacagcact |
275 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24596225 |
gttagcagagatgtagtctttgcagaaaatgaactgcaaagtgagcagaaacatgacaacact |
24596163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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