View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17522_low_2 (Length: 275)
Name: NF17522_low_2
Description: NF17522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17522_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 25907317 - 25907503
Alignment:
| Q |
19 |
gccggtggccacgcaaaggatgaaggtgaagttgagtcttacagattgaacatgatttcatgctcttcactggtcagaagccaccaaagaaaccgaataa |
118 |
Q |
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| T |
25907317 |
gccggtggccacgcaaaggatgaaggtgaagttgagtcttacagattgaacatgatttcatgctcttcactggtcagaagccaccaaaaaaaccgaataa |
25907416 |
T |
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| Q |
119 |
gagaccaaaaattgttcggaaaacccttgagataatcatattctcactctttacttttattttgattcaatttgttcaacttgtttt |
205 |
Q |
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| T |
25907417 |
gagaccaaaaattgttcggaaaacccttgagataatcatattctcactctttacttttattttgattcaatttgttcaacttgtttt |
25907503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 25889929 - 25890021
Alignment:
| Q |
113 |
gaataagagaccaaaaattgttcggaaaacccttgagataatcatattctcactctttacttttattttgattcaatttgttcaacttgtttt |
205 |
Q |
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| T |
25889929 |
gaataagagaccaaaaattgttcagaaaacccttgaggtaatcatattctcactctttacttttactttgattcaattttttcaacttgtttt |
25890021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 98766 - 98870
Alignment:
| Q |
61 |
agattgaacatgatttcatgctcttcactggtcagaagccaccaaagaaaccgaataagagaccaaaaattgttcggaaaacccttgagataatcatatt |
160 |
Q |
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| T |
98766 |
agatcgaacatgatttcttactcatgactggtcagaagccgccaaagaaaccgattaagagatcaacaaaggttcagaaatctgttgaggtaatcatatt |
98865 |
T |
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| Q |
161 |
ctcac |
165 |
Q |
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| T |
98866 |
ctcac |
98870 |
T |
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