View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_high_10 (Length: 407)

Name: NF17523_high_10
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_high_10
NF17523_high_10
[»] chr6 (59 HSPs)
chr6 (1-228)||(26876038-26876265)
chr6 (224-392)||(26863971-26864139)
chr6 (223-392)||(26979773-26979942)
chr6 (208-392)||(26952140-26952324)
chr6 (224-392)||(26961474-26961642)
chr6 (223-334)||(28788806-28788917)
chr6 (223-334)||(27662844-27662955)
chr6 (208-334)||(27425209-27425335)
chr6 (223-334)||(27716128-27716239)
chr6 (218-392)||(25076214-25076388)
chr6 (224-392)||(31286939-31287107)
chr6 (223-394)||(25582068-25582239)
chr6 (221-392)||(26648845-26649016)
chr6 (221-392)||(26754813-26754984)
chr6 (221-392)||(26851032-26851203)
chr6 (224-334)||(28794830-28794940)
chr6 (1-90)||(25485592-25485681)
chr6 (1-90)||(25513477-25513566)
chr6 (1-90)||(25547579-25547668)
chr6 (224-388)||(25513242-25513406)
chr6 (224-334)||(27602355-27602462)
chr6 (223-334)||(25547389-25547500)
chr6 (223-326)||(27681413-27681516)
chr6 (224-334)||(27590612-27590722)
chr6 (1-90)||(26145599-26145688)
chr6 (223-394)||(26058268-26058439)
chr6 (223-394)||(26078238-26078409)
chr6 (223-334)||(26145418-26145529)
chr6 (223-334)||(26826244-26826355)
chr6 (1-87)||(26058521-26058607)
chr6 (1-87)||(26078491-26078577)
chr6 (223-328)||(27608748-27608853)
chr6 (285-334)||(27675270-27675319)
chr6 (1-53)||(26638041-26638093)
chr6 (1-53)||(26744007-26744059)
chr6 (1-53)||(26980049-26980101)
chr6 (290-334)||(27528970-27529014)
chr6 (1-53)||(27608592-27608644)
chr6 (5-53)||(27703693-27703741)
chr6 (224-328)||(27703846-27703950)
chr6 (1-53)||(28795048-28795100)
chr6 (1-48)||(25582348-25582395)
chr6 (5-48)||(27696067-27696110)
chr6 (1-90)||(25076495-25076584)
chr6 (5-53)||(27681596-27681644)
chr6 (1-48)||(26658626-26658673)
chr6 (1-48)||(26764597-26764644)
chr6 (1-56)||(26826525-26826580)
chr6 (208-271)||(26886593-26886656)
chr6 (1-48)||(26961755-26961802)
chr6 (1-48)||(28789029-28789076)
chr6 (224-326)||(27696220-27696322)
chr6 (1-90)||(31287178-31287267)
chr6 (1-53)||(26625768-26625820)
chr6 (1-53)||(26731745-26731797)
chr6 (224-268)||(27675206-27675250)
chr6 (232-272)||(29828488-29828528)
chr6 (285-322)||(26886539-26886576)
chr6 (5-53)||(27715976-27716024)
[»] chr1 (7 HSPs)
chr1 (218-392)||(28125316-28125490)
chr1 (224-392)||(265960-266128)
chr1 (224-392)||(26138297-26138465)
chr1 (221-325)||(28130350-28130454)
chr1 (1-57)||(265803-265859)
chr1 (35-129)||(28125130-28125224)
chr1 (1-98)||(26138594-26138691)
[»] scaffold0277 (4 HSPs)
scaffold0277 (223-334)||(11282-11393)
scaffold0277 (224-334)||(2320-2430)
scaffold0277 (1-48)||(2160-2207)
scaffold0277 (1-48)||(11123-11170)
[»] scaffold0003 (1 HSPs)
scaffold0003 (208-334)||(62028-62154)
[»] chr4 (9 HSPs)
chr4 (208-334)||(18076220-18076346)
chr4 (231-337)||(18687287-18687393)
chr4 (231-337)||(18697075-18697181)
chr4 (233-337)||(18729170-18729274)
chr4 (231-337)||(18677232-18677338)
chr4 (231-337)||(18721746-18721852)
chr4 (233-337)||(18653152-18653256)
chr4 (231-272)||(18682391-18682432)
chr4 (231-272)||(18726667-18726708)
[»] scaffold0349 (2 HSPs)
scaffold0349 (223-334)||(15706-15817)
scaffold0349 (5-53)||(15921-15969)
[»] scaffold0419 (2 HSPs)
scaffold0419 (224-334)||(9956-10066)
scaffold0419 (1-48)||(10179-10226)
[»] chr2 (1 HSPs)
chr2 (229-392)||(17990853-17991016)
[»] chr8 (4 HSPs)
chr8 (1-51)||(29271311-29271361)
chr8 (224-329)||(22023703-22023808)
chr8 (293-328)||(29271537-29271572)
chr8 (223-252)||(29271467-29271496)
[»] scaffold1870 (1 HSPs)
scaffold1870 (294-334)||(1237-1277)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 26876265 - 26876038
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaacattgtggaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876265 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaacattgtggaact 26876166  T
Q  101 gaacgtatcattatgattaggcaataataaacggcaatatgaagcagtaatctttgtcaattttgacaattccatctgagttgaaaacctgagcatttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26876165 gaacgtatcattatgattaggcaataataaacggcaatatgaagcagtaatctttgtcaattttgacaattccatctgagttgaaaacctgagcatttca 26876066  T
Q  201 tcttggcatattattaggtcacgaagtt 228  Q
    ||||||||||||||||||||||||||||    
T  26876065 tcttggcatattattaggtcacgaagtt 26876038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 224 - 392
Target Start/End: Complemental strand, 26864139 - 26863971
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26864139 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 26864040  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26864039 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgccaattgtaagggtggaaaa 26863971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 223 - 392
Target Start/End: Complemental strand, 26979942 - 26979773
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||| | ||| ||||  |||| |||||||||| |||| |  ||||||||||||||    
T  26979942 gaagttcactgagatattgaaatgaaaatggcaattctcctatggaagtattagagaacccaatcttttttatatttttcatttgacataataattctgg 26979843  T
Q  323 aaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    |||||| ||||| ||   ||||||| |||||||||||  ||||||||| | ||| |||||||||||||||    
T  26979842 aaaacttttgagactatcacactcagagagttccaattccttaagagagggcaaatgtaagggtggaaaa 26979773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 208 - 392
Target Start/End: Complemental strand, 26952324 - 26952140
Alignment:
Q  208 atattattaggtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatctt 307  Q
    ||||||||| |  |||||||||||||||||||  ||||||||||| |||||||| |||||| |||||| | | |   ||||||||||||||| |||||||    
T  26952324 atattattaagcgacgaagttcactgagatttccaaatgaaaatggcaattctcctatggatgtttcatatatcgtaatctcttttatatttgtcatctt 26952225  T
Q  308 gcataataattctggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    |||||||||||||||||| |||||||| ||   ||||||| |||||| ||||  || |||||| | ||| ||||||| |||||||    
T  26952224 gcataataattctggaaagctcttgagactctcacactcagagagtttcaattcctcaagagagggcaactgtaaggatggaaaa 26952140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 392
Target Start/End: Complemental strand, 26961642 - 26961474
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    |||||||||||||| ||||||||||||||  ||||||| ||||||||| ||| | |     ||||||||||||||| |||| | ||||||||||||||||    
T  26961642 aagttcactgagatattgaaatgaaaatggaaattctcctatggaagtatcacaaagattaatctcttttatatttgtcatttggcataataattctgga 26961543  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||| ||||| ||   ||||| | |||||||||||  ||||||||| | ||| |||||||||||||||    
T  26961542 aaacttttgagactatcacacttagagagttccaattccttaagagagggcaaatgtaagggtggaaaa 26961474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 28788917 - 28788806
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagt-ttcagacaaccggatctcttttatatttatcatcttgcataataattctg 321  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||| | |||||  |||| ||| |||||| |||||||||||||||||| ||    
T  28788917 gaagttcactgagattttgaaatgaagatggcaattctcttatggaagtattctg-caaccaaatctttttaatatttgtcatcttgcataataattttg 28788819  T
Q  322 gaaaactcttgag 334  Q
    |||||||||||||    
T  28788818 gaaaactcttgag 28788806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 27662844 - 27662955
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||| ||||||||| ||||||||||| || ||||  ||||||||| ||| | ||||  |||||||||||||||  |||||||||||||||||||||    
T  27662844 gaagttcattgagatttttaaatgaaaatggcatttcttctatggaagtatcacataaccaaatctcttttatatttgacatcttgcataataattctgg 27662943  T
Q  323 aaaactcttgag 334  Q
    ||||||||||||    
T  27662944 aaaactcttgag 27662955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 27425209 - 27425335
Alignment:
Q  208 atattattaggtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatctt 307  Q
    ||||| ||| || |||||||||||| ||||||||||| |||||||  ||||||| ||||||||||||   ||||  |||   |||||||||| |||||||    
T  27425209 atattgttaagtgacgaagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatctt 27425308  T
Q  308 gcataataattctggaaaactcttgag 334  Q
    |||||||||||||||||||||||||||    
T  27425309 gcataataattctggaaaactcttgag 27425335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 27716128 - 27716239
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||| ||||||||||||||||||| || ||||| ||||||||| | | ||||||  || |  | ||||||| ||||||||||||||||||||||    
T  27716128 gaagttcactaagattttgaaatgaaaatggcagttctcctatggaagtattacacaaccaaatattgtctatatttgtcatcttgcataataattctgg 27716227  T
Q  323 aaaactcttgag 334  Q
    ||||||||||||    
T  27716228 aaaactcttgag 27716239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 392
Target Start/End: Complemental strand, 25076388 - 25076214
Alignment:
Q  218 gtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataat 317  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |   ||||   ||   ||| | |||| |||||||||| ||||||    
T  25076388 gtcacgaagttcactgagattttgaaatgaaaatggcaattctcctatggaagtaccgtccaacaaaatacttttcaaatttgtcatcttgcacaataat 25076289  T
Q  318 tctggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||||||||||||||| ||  |||||||| | |||| ||||  ||||||||| | ||   ||||||||||||||    
T  25076288 tctggaaaactcttgagactccaacactcagaaagtttcaattccttaagagagggcagccgtaagggtggaaaa 25076214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 392
Target Start/End: Complemental strand, 31287107 - 31286939
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||| | |   |||   ||   |||||||||| |||||||||||||||||||||||    
T  31287107 aagttcactgagattttgaaatgaagatggcaattctcctatggaagtattaacaaacaaaatacgttttatatttgtcatcttgcataataattctgga 31287008  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||| ||||| || | |||   | |||||||||||  ||||||||||| |||   |||||||||||||    
T  31287007 aaactattgagactcacacaaaaagagagttccaattccttaagagatgccaaacctaagggtggaaaa 31286939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 25582239 - 25582068
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||||| ||||||||||||| ||| |||||||  ||||||| |  || | | |  ||| |||||||||||| ||||||||||||||||||||||    
T  25582239 gaagttcactgaaattttgaaatgaatatggcaattcttctatggaaatggcatatatcttgatatcttttatatttctcatcttgcataataattctgg 25582140  T
Q  323 aaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaatg 394  Q
    |||| ||||||| ||   ||||| | ||| ||| ||| |||||||||| | ||  ||||||||||| |||||    
T  25582139 aaaattcttgagactctcacacttagagatttcaaatttcttaagagagggcagctgtaagggtgggaaatg 25582068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 26649016 - 26648845
Alignment:
Q  221 acgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattct 320  Q
    |||||||||||||||||| ||||||||| ||| |||||||| ||| ||||||  ||||||    || | |||||||||| |||| |||||||||||||||    
T  26649016 acgaagttcactgagattatgaaatgaagatggcaattctcctattgaagttctagacaaaaaaatatgttttatatttctcattttgcataataattct 26648917  T
Q  321 ggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    |||||| |||| || ||   |||  ||  ||||||||||  |||||||||||||||   |||||||||||||    
T  26648916 ggaaaattctttagactctcacaaccactgagttccaattgcttaagagatgtcaaccctaagggtggaaaa 26648845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 26754984 - 26754813
Alignment:
Q  221 acgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattct 320  Q
    |||||||||||||||||| ||||||||| ||| |||||||| ||| ||||||  ||||||    || | |||||||||| |||| |||||||||||||||    
T  26754984 acgaagttcactgagattatgaaatgaagatggcaattctcctattgaagttctagacaaaaaaatatgttttatatttctcattttgcataataattct 26754885  T
Q  321 ggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    |||||| |||| || ||   |||  ||  ||||||||||  |||||||||||||||   |||||||||||||    
T  26754884 ggaaaattctttagactctcacaaccactgagttccaattgcttaagagatgtcaaccctaagggtggaaaa 26754813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 392
Target Start/End: Complemental strand, 26851203 - 26851032
Alignment:
Q  221 acgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattct 320  Q
    |||||||||||||||||||| ||||||| ||| |||||||| |||||||||   |   |||   ||||||| ||||||| ||||||||||||||||||||    
T  26851203 acgaagttcactgagatttttaaatgaagatggcaattctcctatggaagtacgatgtaactcaatctcttctatatttgtcatcttgcataataattct 26851104  T
Q  321 ggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    |||||| ||||||| ||  |||||  | | | |  ||||  ||||||||| | |||||||||||||||||||    
T  26851103 ggaaaattcttgagactcgaacacctagataatatcaattccttaagagagggcaattgtaagggtggaaaa 26851032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 334
Target Start/End: Complemental strand, 28794940 - 28794830
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||| ||||||||||||||||| ||| |||||||| ||||||||| | ||| |  |  |||||||| |||||| |||||||||||||||||| ||||    
T  28794940 aagttcattgagattttgaaatgaagatggcaattctcctatggaagtataagatataccaatctctttgatatttgtcatcttgcataataattttgga 28794841  T
Q  324 aaactcttgag 334  Q
    ||| |||||||    
T  28794840 aaattcttgag 28794830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25485681 - 25485592
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| | | |||| |  | ||||||||||||||||||||    
T  25485681 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttgttgtttctgagctcaacatgttccacatttgaaaaca 25485592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25513566 - 25513477
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |   |||| |  ||||||||||||||||||||||    
T  25513566 tcacattaacaaaccacttgagaagtattgggagacattcatctgagacgttgttgtcactgaggtcaagatgttccacatttgaaaaca 25513477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25547668 - 25547579
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| | | |||| |  | ||||||||||||||||||||    
T  25547668 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttgttgtttctgaggtcaacatgttccacatttgaaaaca 25547579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 388
Target Start/End: Complemental strand, 25513406 - 25513242
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||| ||||||||||||| ||| |||||||  ||||||||| ||| | | |   || |||||||||||| ||||||| |||||||||||||||    
T  25513406 aagttcactgaaattttgaaatgaagatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatcttacataataattctgga 25513307  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtgg 388  Q
    ||| ||||||| ||   |||| || ||| ||| ||| |||||||||| | ||  |||||||||||    
T  25513306 aaattcttgagactcttacacccagagatttcaaatttcttaagagagggcagctgtaagggtgg 25513242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 27602355 - 27602462
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    |||||||||||||||||||| ||||||||  |||||    ||| ||||||||  |||||  || ||||||| |||| |||||||||||||||||||||||    
T  27602355 aagttcactgagattttgaattgaaaatggaaattcc---atgcaagtttcattcaaccaaatatcttttaaatttgtcatcttgcataataattctgga 27602451  T
Q  324 aaactcttgag 334  Q
    |||||||||||    
T  27602452 aaactcttgag 27602462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 25547500 - 25547389
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||||| ||||||||||||| | | |||||||  ||| ||||| ||| | | |  ||| |||||||||||| ||||||||||||||||||||||    
T  25547500 gaagttcactgaaattttgaaatgaatacggcaattcttctatagaagtatcatatatcttgatatcttttatatttgtcatcttgcataataattctgg 25547401  T
Q  323 aaaactcttgag 334  Q
    |||| |||||||    
T  25547400 aaaattcttgag 25547389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 27681516 - 27681413
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||| | ||| |     ||||||||||||| |  |||||||||||||||||||||    
T  27681516 gaagttcactgagattttgaaatgaaaatggcagttctcctatggaagtattagatatatcaatctcttttatatgtgccatcttgcataataattctgg 27681417  T
Q  323 aaaa 326  Q
    ||||    
T  27681416 aaaa 27681413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 27590612 - 27590722
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||| |   | ||||  ||||  | ||||||| |||||||||||||||||| ||||    
T  27590612 aagttcactgagattttgaaatgaagatggcaattctcgtatggaagtataccaaaaccaaatcttgtctatatttgtcatcttgcataataattttgga 27590711  T
Q  324 aaactcttgag 334  Q
    ||||| |||||    
T  27590712 aaacttttgag 27590722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 26145688 - 26145599
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| | | |||| |  | ||||||||||||||||||||    
T  26145688 tcacattaacaaaccacttgagaagtattgggagacattcatccgagaggttgttgtctctgaggtcaacatgttccacatttgaaaaca 26145599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 26058439 - 26058268
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||| ||||| ||||||||||||| ||| |||||||  ||||||||| ||| | | |   || |||||||||||| ||||||  ||||||||||||||    
T  26058439 gaagtttactgaaattttgaaatgaatatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatctcacataataattctgg 26058340  T
Q  323 aaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaatg 394  Q
    |||| ||||||| || | ||| |||  || ||| ||| |||||||||| | ||  ||||||||||| |||||    
T  26058339 aaaattcttgagactcacacaatcagtgatttcaaatttcttaagagagggcagctgtaagggtgggaaatg 26058268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 394
Target Start/End: Complemental strand, 26078409 - 26078238
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||| ||||| ||||||||||||| ||| |||||||  ||||||||| ||| | | |   || |||||||||||| ||||||  ||||||||||||||    
T  26078409 gaagtttactgaaattttgaaatgaatatggcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatctcacataataattctgg 26078310  T
Q  323 aaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaatg 394  Q
    |||| ||||||| || | ||| |||  || ||| ||| |||||||||| | ||  ||||||||||| |||||    
T  26078309 aaaattcttgagactcacacaatcagtgatttcaaatttcttaagagagggcagctgtaagggtgggaaatg 26078238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 26145529 - 26145418
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||||| ||||||||||||| ||  |||||||  ||||||||| ||| | | |   || |||||||||||| ||||||| ||||||||||||||    
T  26145529 gaagttcactgaaattttgaaatgaatatcgcaattcttctatggaagtatcatatatctcaatatcttttatatttgtcatcttacataataattctgg 26145430  T
Q  323 aaaactcttgag 334  Q
    |||| |||||||    
T  26145429 aaaattcttgag 26145418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 26826355 - 26826244
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||| |||||||| |||||||| ||| |||||||| ||||||||| ||| |||| |  ||  ||||||| ||| ||||||  |||||||||| |||    
T  26826355 gaagttcattgagatttcgaaatgaagatggcaattctcctatggaagtatcatacaaacaaattccttttatttttgtcatctcacataataattttgg 26826256  T
Q  323 aaaactcttgag 334  Q
    ||||||||||||    
T  26826255 aaaactcttgag 26826244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26058607 - 26058521
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaa 87  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||   |  ||| || |||||||||||||||||||    
T  26058607 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggctgttgcctgcgaggttaagatgttccacatttgaaa 26058521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26078577 - 26078491
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaa 87  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||   |  ||| || |||||||||||||||||||    
T  26078577 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggctgttgcctgcgaggttaagatgttccacatttgaaa 26078491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 27608748 - 27608853
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||   |  ||||   || |  | ||| ||| ||||||||||||||||||||||    
T  27608748 gaagttcactgagattttgaaatgaaaatggcagttctcttatggaagtactaatcaacaaaatattgtctatctttgtcatcttgcataataattctgg 27608847  T
Q  323 aaaact 328  Q
    ||||||    
T  27608848 aaaact 27608853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Original strand, 27675270 - 27675319
Alignment:
Q  285 atctcttttatatttatcatcttgcataataattctggaaaactcttgag 334  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  27675270 atctctttgatatttgtcatcttgcataataattctggaaaactcttgag 27675319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26638093 - 26638041
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  26638093 tcacattagcacaccacttgagaagtattgggagacattcatctgataagttg 26638041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26744059 - 26744007
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||||    
T  26744059 tcacattagcacaccacttgagaagtattgggagacattcatctgataagttg 26744007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26980101 - 26980049
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  26980101 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttg 26980049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 334
Target Start/End: Original strand, 27528970 - 27529014
Alignment:
Q  290 ttttatatttatcatcttgcataataattctggaaaactcttgag 334  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  27528970 ttttatatttgtcatcttgcataataattctggaaaactcttgag 27529014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27608592 - 27608644
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  27608592 tcacattaacaaaccacttgagaagtattgggagacattcatctgagaggttg 27608644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 27703693 - 27703741
Alignment:
Q  5 attaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  27703693 attaacacaccacttgagaagtattgggagacattcatctgagaggttg 27703741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 27703846 - 27703950
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||||||||||||||||||||| || ||||| ||| ||||| |    |||||  || |  | ||||||| |||||||||||||||||||||||    
T  27703846 aagttcactgagattttgaaatgaaaatggcagttctcctatagaagtatgctgcaaccaaatattatctatatttgtcatcttgcataataattctgga 27703945  T
Q  324 aaact 328  Q
    |||||    
T  27703946 aaact 27703950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28795100 - 28795048
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  28795100 tcacattaacacaccacttgagaaatattgggagacattcatctgagaggttg 28795048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25582395 - 25582348
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  25582395 tcacattaacaaaccacttgagaagtattgggagacattcatctgaga 25582348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 27696067 - 27696110
Alignment:
Q  5 attaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  27696067 attaacacaccacttgagaagtattgggagacattcatctgaga 27696110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25076584 - 25076495
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||||| | | ||||||  | |||||| ||||||| |||| |||| ||||    
T  25076584 tcacattaacaaaccacttgagaagtattggaagacattcatctgaaaggatgttatcgtggagattaagatgtttcacacttgataaca 25076495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 27681644 - 27681596
Alignment:
Q  5 attaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||    
T  27681644 attaacacaccacttgagaactattgggagacattcatctgagaggttg 27681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26658673 - 26658626
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  26658673 tcacattaacacaccacttgagaagtattggaagacagtcatctgaga 26658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26764644 - 26764597
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    ||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  26764644 tcacattaacacaccacttgagaagtattggaagacagtcatctgaga 26764597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 26826580 - 26826525
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgtta 56  Q
    |||||||||||||||||||||||| ||  ||||||||| ||||||||| |||||||    
T  26826580 tcacattaacacaccacttgagaaatatcgggagacatccatctgagaggttgtta 26826525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 26886656 - 26886593
Alignment:
Q  208 atattattaggtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagt 271  Q
    ||||| ||| || |||||||||||||||||||| ||||||||||| |||| ||| |||||||||    
T  26886656 atattgttacgtgacgaagttcactgagattttcaaatgaaaatggcaatcctcctatggaagt 26886593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26961802 - 26961755
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    ||||||||||| || |||||||||||| ||||||||||||||||||||    
T  26961802 tcacattaacaaacaacttgagaagtattgggagacattcatctgaga 26961755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 28789076 - 28789029
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||    
T  28789076 tcacataaacacaccacttgagaaatattgggagacattcatctgaga 28789029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 27696220 - 27696322
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||||||||||||||||||||| || || || ||||||| | | | | |     ||||||||||||| |  ||||||||||||||||||||||    
T  27696220 aagttcactgagattttgaaatgaaaatggcagttttcctatggaaatataaaatatatcaatctcttttatatgtgccatcttgcataataattctgga 27696319  T
Q  324 aaa 326  Q
    |||    
T  27696320 aaa 27696322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 31287267 - 31287178
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaaca 90  Q
    ||||||||||| ||||||||||||||| ||| | |||||||||||||| ||||  || || |||| | || |||  ||||||||||||||    
T  31287267 tcacattaacaaaccacttgagaagtattggtaaacattcatctgagaggttgcaattttggagactaagctgtgtcacatttgaaaaca 31287178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26625820 - 26625768
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    ||||||||||| |||||||||||| || ||||||| |||||||||||| ||||    
T  26625820 tcacattaacaaaccacttgagaattattgggagatattcatctgagaggttg 26625768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26731797 - 26731745
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    ||||||||||| |||||||||||| || ||||||| |||||||||||| ||||    
T  26731797 tcacattaacaaaccacttgagaattattgggagatattcatctgagaggttg 26731745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 27675206 - 27675250
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatgga 268  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||    
T  27675206 aagttcactgagattttgaaatgaagatggcaattctcctatgga 27675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 29828528 - 29828488
Alignment:
Q  232 tgagattttgaaatgaaaatgacaattctcttatggaagtt 272  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  29828528 tgagattttgaaatgaaaatggcaattcttttatggaagtt 29828488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 322
Target Start/End: Complemental strand, 26886576 - 26886539
Alignment:
Q  285 atctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  26886576 atctcttttaaatttgtcatcttgcataataattctgg 26886539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 27715976 - 27716024
Alignment:
Q  5 attaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||||||||||||||| |  | |||||||||||||||||| ||||    
T  27715976 attaacacaccacttgagaactcttcggagacattcatctgagaggttg 27716024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 218 - 392
Target Start/End: Original strand, 28125316 - 28125490
Alignment:
Q  218 gtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataat 317  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||  |||||  ||||||| ||||||| ||||||||| |||||||    
T  28125316 gtcacgaagttcactgagattttgaaatgaaaatggtaattctcttatggaagttccacgcaaccaaatctcttctatatttgtcatcttgcctaataat 28125415  T
Q  318 tctggaaaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||||||||||||||| ||   ||| |||  ||||| ||||  ||||||| | ||||| |||||||| ||||||    
T  28125416 tctggaaaactcttgagactctcacattcactgagtttcaattccttaagacaggtcaactgtaaggggggaaaa 28125490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 224 - 392
Target Start/End: Original strand, 265960 - 266128
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    |||| |||||||||||||||||||| ||| |||||||||||||||||||||| |||||   || | || ||||||| |||||||||||||||||| ||||    
T  265960 aagtccactgagattttgaaatgaagatggcaattctcttatggaagtttcatacaacaaaatattttctatatttgtcatcttgcataataattttgga 266059  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    || || ||||| ||  ||||| || ||||||||| |  ||||||||| | || ||||||||||||||||    
T  266060 aagctattgagactccaacacccagagagttccatttccttaagagagggcagttgtaagggtggaaaa 266128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 224 - 392
Target Start/End: Complemental strand, 26138465 - 26138297
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||| ||| || ||||||  || |||||||||||| ||| | | |  | ||||||||||    
T  26138465 aagttcactgaaattttgaaatgaaaatggcaattctcctatggaggttccatacaaccaaatgtcttttatatttgtcaacctaccaactaattctgga 26138366  T
Q  324 aaactcttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||||||||||| ||   |||   | ||||||||||| |||||||||| ||||| |||||||||||||||    
T  26138365 aaactcttgagactcttacaaatagagagttccaatttcttaagagaggtcaactgtaagggtggaaaa 26138297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 221 - 325
Target Start/End: Original strand, 28130350 - 28130454
Alignment:
Q  221 acgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattct 320  Q
    |||||||||||| |||||||||||||||||||  |||||||||||||||||||||  |||||  ||||||| ||||||| ||| ||||| ||||||||||    
T  28130350 acgaagttcacttagattttgaaatgaaaatggtaattctcttatggaagtttcactcaacctaatctcttgtatatttgtcaacttgcctaataattct 28130449  T
Q  321 ggaaa 325  Q
    |||||    
T  28130450 ggaaa 28130454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 265803 - 265859
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttat 57  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  265803 tcacattaacacaccacttgagaagtattgggagacattcatctgagagattgttat 265859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 28125130 - 28125224
Alignment:
Q  35 acattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaacattgtggaactgaacgtatcattatgattaggcaataata 129  Q
    |||||||||||||| |||||||| ||  ||| | ||||||||||||||||||  || ||||||||| ||  |||| ||||| || ||||||||||    
T  28125130 acattcatctgagaggttgttattttcaagaataagatgttccacatttgaagccactgtggaactcaatatatccttatgttttggcaataata 28125224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26138691 - 26138594
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagttgttatatttgagatttagatgttccacatttgaaaacattgtggaa 98  Q
    |||||||| ||||| || |||||| || ||| | |||||||||||||| | |||| | |   ||||| |||| ||||||||||||||||| |||||||    
T  26138691 tcacattagcacacaacctgagaattattggaacacattcatctgagaggctgttgtttccaagattaagatattccacatttgaaaacagtgtggaa 26138594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 11282 - 11393
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagt-ttcagacaaccggatctcttttatatttatcatcttgcataataattctg 321  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||| | |||||  |||| ||| |||||| |||||||||||||||||| ||    
T  11282 gaagttcactgagattttgaaatgaagatggcaattctcttatggaagtattctg-caaccaaatctttttaatatttgtcatcttgcataataattttg 11380  T
Q  322 gaaaactcttgag 334  Q
    |||||||||||||    
T  11381 gaaaactcttgag 11393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 224 - 334
Target Start/End: Original strand, 2320 - 2430
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||    |||||  |||  ||| |||||| |||||||||||||||||| ||||    
T  2320 aagttcattgagattttgaaatgaagatggcaattctcttatggaagttttctgcaaccaaatcattttcatatttgtcatcttgcataataattttgga 2419  T
Q  324 aaactcttgag 334  Q
    |||||||||||    
T  2420 aaactcttgag 2430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2160 - 2207
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  2160 tcacattaacacaccacttgagaaatattgggagacattcatctgaga 2207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11123 - 11170
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||    
T  11123 tcacataaacacaccacttgagaaatattgggagacattcatctgaga 11170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 62154 - 62028
Alignment:
Q  208 atattattaggtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatctt 307  Q
    ||||| ||| || |||||||||||| ||||||||||| |||||||  ||||||| ||||||||||||   ||||  |||   |||||||||| |||||||    
T  62154 atattgttaagtgacgaagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatctt 62055  T
Q  308 gcataataattctggaaaactcttgag 334  Q
    |||||||||||||||||||||||||||    
T  62054 gcataataattctggaaaactcttgag 62028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 18076346 - 18076220
Alignment:
Q  208 atattattaggtcacgaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatctt 307  Q
    ||||| ||| || |||||||||||| ||||||||||| |||||||  ||||||| ||||||||||||   ||||  |||   |||||||||| |||||||    
T  18076346 atattgttaagtgacgaagttcactaagattttgaaaggaaaatggaaattctcctatggaagtttccttcaacaagatagattttatatttgtcatctt 18076247  T
Q  308 gcataataattctggaaaactcttgag 334  Q
    |||||||||||||||||||||||||||    
T  18076246 gcataataattctggaaaactcttgag 18076220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 18687287 - 18687393
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactct 330  Q
    |||||||||||||||||||||| |||||||||| ||||||||  | |||  |  ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18687287 ctgagattttgaaatgaaaatggcaattctcttgtggaagttatacacattccaatctcttttgtatttgtcatcttacataataattctggaaaactct 18687386  T
Q  331 tgagtct 337  Q
    |||||||    
T  18687387 tgagtct 18687393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 18697075 - 18697181
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactct 330  Q
    |||||||||||||||||||||| |||||||||| ||||||||  | |||  |  ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18697075 ctgagattttgaaatgaaaatggcaattctcttgtggaagttgtacacattccaatctcttttgtatttgtcatcttacataataattctggaaaactct 18697174  T
Q  331 tgagtct 337  Q
    |||||||    
T  18697175 tgagtct 18697181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 18729170 - 18729274
Alignment:
Q  233 gagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactcttg 332  Q
    ||||| |||||||||||||| |||||||||| ||||||||| | |||  |  ||||||||| ||||| ||||||| ||||||||||||||||||||||||    
T  18729170 gagatattgaaatgaaaatggcaattctcttgtggaagttttacacattccaatctcttttgtatttgtcatcttacataataattctggaaaactcttg 18729269  T
Q  333 agtct 337  Q
    |||||    
T  18729270 agtct 18729274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 18677232 - 18677338
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactct 330  Q
    |||||||||||||||||||||| ||||||| || ||||||||  | |||  |  ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  18677232 ctgagattttgaaatgaaaatggcaattctgttgtggaagttatacacattccaatctcttttgtatttgtcatcttacataataattctggaaaactct 18677331  T
Q  331 tgagtct 337  Q
    |||||||    
T  18677332 tgagtct 18677338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 18721746 - 18721852
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactct 330  Q
    |||||||||||||||||||||| |||||||||| ||||||||  | |||  |  ||| ||||| ||||| ||||||| ||||||| ||||||||||||||    
T  18721746 ctgagattttgaaatgaaaatggcaattctcttgtggaagttatacacattccaatcgcttttgtatttgtcatcttacataatagttctggaaaactct 18721845  T
Q  331 tgagtct 337  Q
    |||||||    
T  18721846 tgagtct 18721852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 337
Target Start/End: Original strand, 18653152 - 18653256
Alignment:
Q  233 gagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaactcttg 332  Q
    |||||||||||||||||||| |||||||||| ||||||||  | |||  |  ||||||||| ||||| ||||||| ||||||| ||||||||||| ||||    
T  18653152 gagattttgaaatgaaaatggcaattctcttgtggaagttatacacattccaatctcttttgtatttgtcatcttacataatagttctggaaaacacttg 18653251  T
Q  333 agtct 337  Q
    |||||    
T  18653252 agtct 18653256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 18682391 - 18682432
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtt 272  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  18682391 ctgagattttgaaatgaaaatggcaattctcttatggaagtt 18682432  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 18726667 - 18726708
Alignment:
Q  231 ctgagattttgaaatgaaaatgacaattctcttatggaagtt 272  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  18726667 ctgagattttgaaatgaaaatggcaattctcttatggaagtt 18726708  T

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Target: scaffold0349 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 15817 - 15706
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgg 322  Q
    |||||||||| ||||||||||||||||||| || ||||| ||||||||| | | ||||||  || |  | ||||||| ||||||||||||||||||||||    
T  15817 gaagttcactaagattttgaaatgaaaatggcagttctcctatggaagtattacacaaccaaatattgtctatatttgtcatcttgcataataattctgg 15718  T
Q  323 aaaactcttgag 334  Q
    ||||||||||||    
T  15717 aaaactcttgag 15706  T

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Target: scaffold0349; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 15969 - 15921
Alignment:
Q  5 attaacacaccacttgagaagtagtgggagacattcatctgagaagttg 53  Q
    |||||||||||||||||||| |  | |||||||||||||||||| ||||    
T  15969 attaacacaccacttgagaactcttcggagacattcatctgagaggttg 15921  T

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Target: scaffold0419 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 224 - 334
Target Start/End: Complemental strand, 10066 - 9956
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||||    |||||  |||  ||| |||||| |||||||||||||||||| ||||    
T  10066 aagttcattgagattttgaaatgaagatggcaattctcttatggaagttttctgcaaccaaatcgttttcatatttgtcatcttgcataataattttgga 9967  T
Q  324 aaactcttgag 334  Q
    |||||||||||    
T  9966 aaactcttgag 9956  T

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Target: scaffold0419; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10226 - 10179
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgaga 48  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  10226 tcacattaacacaccacttgagaaatattgggagacattcatctgaga 10179  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 392
Target Start/End: Original strand, 17990853 - 17991016
Alignment:
Q  229 cactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctggaaaact 328  Q
    |||||||||||||||||||||||| |||||||| ||||||| | || | |||||  || | || ||| ||| ||||||||||||||||||||||||||||    
T  17990853 cactgagattttgaaatgaaaatggcaattctcctatggaactatctgccaaccaaatatgttctatctttgtcatcttgcataataattctggaaaact 17990952  T
Q  329 cttgagtctgaaacactcatagagttccaatatcttaagagatgtcaattgtaagggtggaaaa 392  Q
    ||| ||  |   |||   | | ||||||||| |||||||||||| ||| |||||||| ||||||    
T  17990953 ctttaggttcctacatctagatagttccaatttcttaagagatgccaactgtaagggaggaaaa 17991016  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29271311 - 29271361
Alignment:
Q  1 tcacattaacacaccacttgagaagtagtgggagacattcatctgagaagt 51  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29271311 tcacattaacacaccacttgagaagtattgggagacattcatctgagaagt 29271361  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 22023808 - 22023703
Alignment:
Q  224 aagttcactgagattttgaaatgaaaatgacaattctcttatggaagtttcagacaaccggatctcttttatatttatcatcttgcataataattctgga 323  Q
    ||||| ||||||||||||||| ||| ||| |||||||||||||||||| | | |||||   || | || ||||||| |||||||||||||||||| ||||    
T  22023808 aagtttactgagattttgaaaagaagatggcaattctcttatggaagtattatacaacgaaatatattctatatttttcatcttgcataataattttgga 22023709  T
Q  324 aaactc 329  Q
    ||||||    
T  22023708 aaactc 22023703  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 29271537 - 29271572
Alignment:
Q  293 tatatttatcatcttgcataataattctggaaaact 328  Q
    ||||||| ||||||||||||||||||||||||||||    
T  29271537 tatatttttcatcttgcataataattctggaaaact 29271572  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 252
Target Start/End: Original strand, 29271467 - 29271496
Alignment:
Q  223 gaagttcactgagattttgaaatgaaaatg 252  Q
    ||||||||||||||||||||||||||||||    
T  29271467 gaagttcactgagattttgaaatgaaaatg 29271496  T

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Target: scaffold1870 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 1277 - 1237
Alignment:
Q  294 atatttatcatcttgcataataattctggaaaactcttgag 334  Q
    |||||| |||||||||||||||||| |||||||||||||||    
T  1277 atatttgtcatcttgcataataattttggaaaactcttgag 1237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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