View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17523_high_12 (Length: 401)
Name: NF17523_high_12
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_12 |
 | |
|
| [»] scaffold0794 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Complemental strand, 11445494 - 11445126
Alignment:
| Q |
17 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11445494 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgagg |
11445395 |
T |
|
| Q |
117 |
acaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
216 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445394 |
acaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
11445295 |
T |
|
| Q |
217 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11445294 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
11445195 |
T |
|
| Q |
317 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11445194 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11445126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 11547596 - 11547964
Alignment:
| Q |
17 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11547596 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacgtgtggcactcctctaagaaatggctcactgagg |
11547695 |
T |
|
| Q |
117 |
acaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
216 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547696 |
acaaggaactcagcctatttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
11547795 |
T |
|
| Q |
217 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11547796 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
11547895 |
T |
|
| Q |
317 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11547896 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11547964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 11507365 - 11507733
Alignment:
| Q |
17 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
11507365 |
ataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgagg |
11507464 |
T |
|
| Q |
117 |
acaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
216 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507465 |
agaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
11507564 |
T |
|
| Q |
217 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11507565 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttgaagtctatagttgatgttggaggtggaagagga |
11507664 |
T |
|
| Q |
317 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11507665 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
11507733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 385
Target Start/End: Complemental strand, 11468474 - 11468116
Alignment:
| Q |
27 |
aatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaact |
126 |
Q |
| |
|
||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | |||||||||||||||||||||||| || | ||||| ||||| || |
|
|
| T |
11468474 |
aatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatct |
11468375 |
T |
|
| Q |
127 |
tagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgct |
226 |
Q |
| |
|
| || | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| || ||||||||| ||| ||||| ||| |
|
|
| T |
11468374 |
tgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagct |
11468275 |
T |
|
| Q |
227 |
gattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaa |
326 |
Q |
| |
|
||||| ||||| || || |||||||| || || |||| ||||||||||| |||||||| ||| | |||||||| | |||||| | |||| | | ||| |
|
|
| T |
11468274 |
gattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaa |
11468175 |
T |
|
| Q |
327 |
aactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||| ||||||| ||||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
11468174 |
aactcattcatgaagaatttccacacatcaaatgcacagttttagatcaaccacaggtt |
11468116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 27 - 385
Target Start/End: Original strand, 11522987 - 11523345
Alignment:
| Q |
27 |
aatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgaggacaaggaact |
126 |
Q |
| |
|
||||||| ||||| ||||| |||||| ||| | |||||||||||| |||| | |||||||||||||||||||||||| || | ||||| ||||| || |
|
|
| T |
11522987 |
aatcaacttgttttgcaccacttgttaagggaattcttcatccatgttctctggatatgtggcactcctctaagaaatggttctcagaggagaaggatct |
11523086 |
T |
|
| Q |
127 |
tagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgct |
226 |
Q |
| |
|
| || | ||| || |||| || |||||||||| ||| ||||||||||||| ||||||||||| |||| || ||||||||| ||| ||||| ||| |
|
|
| T |
11523087 |
tgcactttatgaaagtgcaatgggggagacattttttaactttcttaacaaagattctgaatctgataaacttggtctgtttcaaggggccatggcagct |
11523186 |
T |
|
| Q |
227 |
gattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaa |
326 |
Q |
| |
|
||||| ||||| || || |||||||| || || |||| ||||||||||| |||||||| ||| | |||||||| | |||||| | |||| | | ||| |
|
|
| T |
11523187 |
gattcacaaatgtttaagcttgctctcaaggactgcagccatgtgtttgagggtttggaatctttggttgatgtggcaggtgggactggagttgtgtcaa |
11523286 |
T |
|
| Q |
327 |
aactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||| ||||||| ||||| || ||||||||||||| || ||||||||||||||| |
|
|
| T |
11523287 |
aactcattcatgaagaatttccacacatcaaatgcacagttttagatcaaccacaggtt |
11523345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 385
Target Start/End: Original strand, 34784235 - 34784539
Alignment:
| Q |
81 |
acatgtggcactcctctaagaaatggctcactgaggacaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaaga |
180 |
Q |
| |
|
|||||||| | || || ||||||||| ||| |||||| ||||||| | || |||||| | |||| |||||||| | |||||| | |||||||||||| |
|
|
| T |
34784235 |
acatgtggaagtcttcaaagaaatggttcaatgaggataaggaacaaactctttttgagtgtgcaacaggagagaactattgggattttcttaacaaaga |
34784334 |
T |
|
| Q |
181 |
tactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggt |
280 |
Q |
| |
|
| ||||||||| | ||||| |||||||||| |||||||||||||||||| ||| || || |||||||| | ||| ||| |||||||||| ||| |
|
|
| T |
34784335 |
ttctgaatctggtactttgagtttgtttcaagatgctatggctgctgattctagaatgtttaagcttgctcttcatgagaacaagaatgtgtttgagggt |
34784434 |
T |
|
| Q |
281 |
ttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccac |
380 |
Q |
| |
|
||||| ||| | |||||||| | ||||||| || | | ||||||| || || |||||||| |||||| | |||||||||| || ||||||||||||| |
|
|
| T |
34784435 |
ttggaatctcttgttgatgtcgcgggtggaaccggtgctgtcacaaagcttattcatgaagcatttcctcagatcaaatgcactgtttttgatcaaccac |
34784534 |
T |
|
| Q |
381 |
aggtt |
385 |
Q |
| |
|
||||| |
|
|
| T |
34784535 |
aggtt |
34784539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 158 - 385
Target Start/End: Original strand, 34776100 - 34776327
Alignment:
| Q |
158 |
ttttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggctatggctgctgattctcaaatcttcaaccttgctctaaaag |
257 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||| | |||||||||||||||| |||||||| |||||||| ||| || || |||| ||| ||| |
|
|
| T |
34776100 |
ttttgggattttcttaacaaagattctgaatctagtactttgagtatgtttcaagatgctatggcatctgattctagaatgtttaagcttgttctccaag |
34776199 |
T |
|
| Q |
258 |
agtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagaggaggtttcacaaaactcatccatgaagcttttcctgacctcaa |
357 |
Q |
| |
|
|| || | || || || |||||||||||| | ||||||||||||||||| | || ||| | ||||||||||| |||||| ||||||| |||| || |
|
|
| T |
34776200 |
agaataaacgcgttttcgagggtttggagtctcttgttgatgttggaggtggtactggtggtgttacaaaactcattcatgaaatttttcctcaccttaa |
34776299 |
T |
|
| Q |
358 |
atgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||| || || |||||||||||||||||| |
|
|
| T |
34776300 |
atgtactgtttttgatcaaccacaggtt |
34776327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 2022 - 2390
Alignment:
| Q |
17 |
ataagtggcaaatcaacatgtttgtcaccatttgttagcggagtgcttcatccatgtcgtctgaacatgtggcactcctctaagaaatggctcactgagg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
2022 |
ataagtggcaaatcaacatgtttgtcaccatttgttaccggaacggttcatccatgtcgtctgaacatatggtactcctctacgaaatggctcactgagg |
2121 |
T |
|
| Q |
117 |
acaaggaacttagcctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
216 |
Q |
| |
|
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2122 |
agaaggaactcagtctctttgagagcgcaagaggagagacattttgggactatcttaacaaagatactgaatctgatgaactgagtatgtttcaagaggc |
2221 |
T |
|
| Q |
217 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggagtctatagttgatgttggaggtggaagagga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2222 |
tatggctgctgattctcaaatcttcaaccttgctctaaaagagtgcaatcatgtgtttgaaggtttggggtctatagttgatgttggaggtggaagagga |
2321 |
T |
|
| Q |
317 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2322 |
ggtttcacaaaactcatccatgaagcttttcctgacctcaaatgcacagtatttgatcaaccacaggtt |
2390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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