View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_high_18 (Length: 366)

Name: NF17523_high_18
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_high_18
NF17523_high_18
[»] chr8 (1 HSPs)
chr8 (1-348)||(33315443-33315784)
[»] chr2 (1 HSPs)
chr2 (1-348)||(38984156-38984491)
[»] chr7 (6 HSPs)
chr7 (159-348)||(32794055-32794244)
chr7 (196-348)||(32793845-32793997)
chr7 (258-348)||(6680064-6680154)
chr7 (249-335)||(6680176-6680262)
chr7 (271-331)||(24288189-24288249)
chr7 (257-306)||(33061499-33061548)
[»] chr4 (1 HSPs)
chr4 (270-348)||(21622544-21622622)
[»] chr6 (1 HSPs)
chr6 (268-348)||(30748602-30748682)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 33315784 - 33315443
Alignment:
Q  1 aacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtgaacgtgcaaggaccacaac 99  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  33315784 aacaatgagggtcaaggagaacaagttcctttagatttgtcacaatcttccccgcaaacacaagagcaattatttgatgtgaatgtgcaaggaccacaac 33315685  T
Q  100 caataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacgtctgaatgaacaaca 199  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||    
T  33315684 caataggaattggacaaggaacttttgatccagcacctattggagttaggccaccacctattagggttcaaaatctaaatgcacgtctgaatggataaca 33315585  T
Q  200 aatgtttacatctttcatgtcaactccaagatttactccaagaggtccgaggcaaactatgtgatgtttgttagtttatttatgtatcgaaattgctaaa 299  Q
    |||| ||||||||||||||||||||||||||||||||  |||      | ||| ||||||||||||||  |||||||||| ||||| |||| | ||||||    
T  33315584 aatgcttacatctttcatgtcaactccaagatttact-taag------ggggccaactatgtgatgttcattagtttattaatgtaccgaagtggctaaa 33315492  T
Q  300 ttataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    |||||||||||| |||||| |||||||||||||||| ||||| ||||||    
T  33315491 ttataagcacaaatgtggttcaatattttgtttaatgttttgatgaatc 33315443  T

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Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 38984156 - 38984491
Alignment:
Q  1 aacaatgagggtcaaggagaacaagttactttagatttgtcacaatctgccccacaaacacaa-agcaattatttgatgtgaacgtgcaaggaccacaac 99  Q
    ||||||| | |||||||| |  ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38984156 aacaatgcgagtcaaggaaatgaagttgctttagatttgtcacaatttgccccacaaacacaagagcaattatttgatgtgaatgtgcaaggaccacaac 38984255  T
Q  100 caataggaattggacaaggaacttttgatccagcaccggttggagttaggccaccacctattaggggtcaaaatccaaatgcacgtctgaatgaacaaca 199  Q
    ||||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  38984256 caataggaattagacagtgaacttttgatccagcaccgattggagttaggccaccacctatta-gggtcaaactccaaatgcacgtctgaatgaacaaca 38984354  T
Q  200 aatgtttacatctttcatgtcaactccaagatttactccaagaggtccgaggcaaactatgtgatgtttgttagtttatttatgtatcgaaattgctaaa 299  Q
    |||| |||||||||||||| ||            |||||||| ||| | |||| |||| |||||||||  ||||||||||||||||  ||||||||||||    
T  38984355 aatgcttacatctttcatgcca------------actccaaggggttcaaggccaactttgtgatgttaattagtttatttatgtactgaaattgctaaa 38984442  T
Q  300 ttataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||||    
T  38984443 ttataagcacaattgtggtgtaatattttgtttaatatcttgctgaatc 38984491  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 159 - 348
Target Start/End: Original strand, 32794055 - 32794244
Alignment:
Q  159 attaggggtcaaaatccaaatgcacgtctgaatgaacaacaaatgtttacatctttcatgtcaactccaagatttactccaagaggtccgaggcaaacta 258  Q
    ||||||||||||| ||||||||||||| ||||||||||||| || ||||||||||||||| |||||| || ||||||| ||||  |||| | |  |||||    
T  32794055 attaggggtcaaactccaaatgcacgtatgaatgaacaacagatatttacatctttcatgccaactctaatatttacttcaaggtgtccaatgtcaacta 32794154  T
Q  259 tgtgatgtttgttagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    |||||||||  || |||||||| ||||| ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  32794155 tgtgatgttcattggtttatttgtgtattgaagttgctaaactataagcacaattgtggtgcaatattttgtttaatattttgttgaatc 32794244  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 196 - 348
Target Start/End: Complemental strand, 32793997 - 32793845
Alignment:
Q  196 aacaaatgtttacatctttcatgtcaactccaagatttactccaagaggtccgaggcaaactatgtgatgtttgttagtttatttatgtatcgaaattgc 295  Q
    |||||||| |||||||||||||  |||||| || |||||| ||||  ||| | | |  ||||||||||||||  ||||||||| ||||||  ||| ||||    
T  32793997 aacaaatgcttacatctttcattccaactctaatatttaccccaaagggtacaatgtcaactatgtgatgttcattagtttatgtatgtactgaagttgc 32793898  T
Q  296 taaattataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  32793897 taaattataagcacaactggggtgcaatattttgtttaatatcttgatgaatc 32793845  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 348
Target Start/End: Complemental strand, 6680154 - 6680064
Alignment:
Q  258 atgtgatgtttgttagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    ||||||||||  ||||||||||||| ||| ||| ||||||||||||||||| || ||||||| ||||||||||| ||||||||||| ||||    
T  6680154 atgtgatgttgattagtttatttatatattgaagttgctaaattataagcagaaatgtggtgtaatattttgttcaatattttgctcaatc 6680064  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 6680176 - 6680262
Alignment:
Q  249 aggcaaactatgtgatgtttgttagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtttaat 335  Q
    |||| ||||||||||||||  ||| |||||||||||  || | || ||||||||||||||||| |||||||||||||||||||||||    
T  6680176 aggccaactatgtgatgttcattaatttatttatgttacggagttactaaattataagcacaattgtggtgcaatattttgtttaat 6680262  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 24288249 - 24288189
Alignment:
Q  271 tagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtt 331  Q
    |||||||||||||||  ||| ||||||||||||||| |||||||||||| |||||||||||    
T  24288249 tagtttatttatgtactgaagttgctaaattataagtacaactgtggtgaaatattttgtt 24288189  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 33061499 - 33061548
Alignment:
Q  257 tatgtgatgtttgttagtttatttatgtatcgaaattgctaaattataag 306  Q
    |||||||||||  |||||| |||||||||| ||| |||||||||||||||    
T  33061499 tatgtgatgttgattagttaatttatgtattgaagttgctaaattataag 33061548  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 270 - 348
Target Start/End: Complemental strand, 21622622 - 21622544
Alignment:
Q  270 ttagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    ||||||||||||||||  ||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21622622 ttagtttatttatgtactgaagttactaaattataagcacgactgtggtgcaatattttgtttaatattttgctgaatc 21622544  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 30748682 - 30748602
Alignment:
Q  268 tgttagtttatttatgtatcgaaattgctaaattataagcacaactgtggtgcaatattttgtttaatattttgctgaatc 348  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||  ||||||| |||||||||||| ||||||    
T  30748682 tgttagtttatttatgtaccgaaattgctaaattataagaacaactgtggtgttatattttatttaatattttgttgaatc 30748602  T

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