View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_20 (Length: 345)
Name: NF17523_high_20
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 40056794 - 40057112
Alignment:
| Q |
18 |
agaacatttgagaagaaaataatgtaggaaaagaatagttctcattagaatgaattgcatctctttataagtcttaagattcacttgcctctcaattgga |
117 |
Q |
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| T |
40056794 |
agaacatttgagaagaaaataatgtagtaaaagaatagttctcattagaatgaattgcatctctttataagtcttaagattcacttgcctctcaattgga |
40056893 |
T |
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| Q |
118 |
gattaaacattgt-atgagaagataacagaataactaccgcactaacttcctagttatcttctgtcaaaagaaaaaataatttccaatcacctaacacat |
216 |
Q |
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| T |
40056894 |
gattaaacattgttataagaagataacagaataactaccgcactaacttcctagttatcttctgtcaaaagaaaaaataatttccaattacctaacacat |
40056993 |
T |
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| Q |
217 |
agtgcataatctgaatccagaaactagtaactctgccattgcttccatcatccattgtgtagagaatacccacttcagaagcacaagcatcttttaggca |
316 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40056994 |
agtgcataatatgaatccacaaactagtaactctgccattgcttccatcatccattgtgtagagaatacccacttcagaagcacaagcaccttttaggca |
40057093 |
T |
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| Q |
317 |
tctaaaaacgttccctttg |
335 |
Q |
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|||||||| |||||||||| |
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| T |
40057094 |
tctaaaaatgttccctttg |
40057112 |
T |
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