View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_23 (Length: 320)
Name: NF17523_high_23
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_23 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 320
Target Start/End: Original strand, 16468521 - 16468826
Alignment:
| Q |
15 |
caaaaaccagcaccattactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatc |
114 |
Q |
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| T |
16468521 |
caaaaaccagcaccataactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatc |
16468620 |
T |
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| Q |
115 |
ttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtatt |
214 |
Q |
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| T |
16468621 |
ttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtccatgaatcaaaaacttctcactggattttgtatt |
16468720 |
T |
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| Q |
215 |
gaggacaagattgtgtgtgagaatgtgtagatgtttggatgtccttaattttaattttaatgaagatgtattgttgattatatctaccagtttattttct |
314 |
Q |
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| T |
16468721 |
gaggacaagattgtatgtgagaatgtgtagatgtttagatgttcttaattttaattttaaagaatatgtagtgttgattatatctaacagtttattttct |
16468820 |
T |
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| Q |
315 |
atgctc |
320 |
Q |
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|||||| |
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| T |
16468821 |
atgctc |
16468826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 34 - 249
Target Start/End: Complemental strand, 14301969 - 14301754
Alignment:
| Q |
34 |
tattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctgaattaatcttattgtgaatcgatatct |
133 |
Q |
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| T |
14301969 |
tattaatattaacactatttttatccttgaagttctcctgttctgaacgatgaatcgccactattagaacctgttttaatcttcttgtgaatcgctctca |
14301870 |
T |
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| Q |
134 |
ctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtattgaggacaagattgtgtgtg |
233 |
Q |
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| T |
14301869 |
ctgtcttgaagaattaccaaacaggtgttgaagaatcgattaaggtctatgaatcaaaaatttatcattggattttgtctcaaggacaagattgtgtgtg |
14301770 |
T |
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| Q |
234 |
agaatgtgtagatgtt |
249 |
Q |
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| T |
14301769 |
agaatgtgtagatgtt |
14301754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 248
Target Start/End: Complemental strand, 14319764 - 14319546
Alignment:
| Q |
34 |
tattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactattagaatctg----aattaatcttattgtgaatcgat |
129 |
Q |
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| T |
14319764 |
tattaatattaatactattgttatccttaaatttctcctgttttgaacgatgaatcaccactattagaaaatgttctaattaatcttcttgtgaatcgct |
14319665 |
T |
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| Q |
130 |
atctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgtattgaggacaagattgtg |
229 |
Q |
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| T |
14319664 |
ctcactgtcttgaagaatcaccaaacacgtgttgaagaatcaattaaggtctatgaataaaaaatttattattggattttgtctcaaggacaagattgtg |
14319565 |
T |
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| Q |
230 |
tgtgagaatgtgtagatgt |
248 |
Q |
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| T |
14319564 |
tgtgagaatgtgtaaatgt |
14319546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 16731856 - 16731658
Alignment:
| Q |
15 |
caaaaaccagcaccattactattaatattaacactaatgttaatcttaaatttctcatgttatgaatgatggatcaccactatta--gaatctgaattaa |
112 |
Q |
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| T |
16731856 |
caaaaaccttcaccatcattattaatattaacactattgttatttctaaatgtctcatgttctaatggatgaataaccactatatctgaatctgatttaa |
16731757 |
T |
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| Q |
113 |
tcttattgtgaatcgatatctctgtcttgaagaaccaccgaactattgttgaagaattgattaaggtctatgaatcaaaaacttctcactggattttgt |
211 |
Q |
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| T |
16731756 |
tcttctcgtgaattgctctctctatcatgaaaaattatcgaacaagtaatgaagaattgattagggtctgtgaatcaaaaacatctcagaggattttgt |
16731658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 17354456 - 17354518
Alignment:
| Q |
185 |
aatcaaaaacttctcactggattttgtattgaggacaagattgtgtgtgagaatgtgtagatg |
247 |
Q |
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| T |
17354456 |
aatcaaaaacttcttaatggattttgtctcaaggacaagattgagtgcgagaatgtgtagatg |
17354518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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