View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_3 (Length: 556)
Name: NF17523_high_3
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 39526046 - 39525632
Alignment:
| Q |
1 |
taaaatgttgcagcctttatttcgcaagattgcttcagccttgcccgggatggaatctctttcaacaaagcaagatgacatggttgatgtaaatttaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39526046 |
taaaatgttgcagcctttatttcgcaagattgcttcagccttgcccgggatggaatctctttcaacaaagcaagatgacatggttgatgtaaatttaaaa |
39525947 |
T |
|
| Q |
101 |
tctaccgcgtattcatccgggacagagcagcaaggtggatgttgttcgtgctaaacagtgctattcacaacaagtcacgagtctgttcacttgacacaat |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39525946 |
tctaccgcgtattcatccaggacagagcagcaaggtggaggttgttcgtgctaaacagtgctattcacaacaagtcacgagtctgttcacttgacacaat |
39525847 |
T |
|
| Q |
201 |
tattggcttggcaaccaaaatggaaatatgcacctaggccaaacccaaacgtgcttgtgtaccaatgctcttcagtttagtttggtagggcttagatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39525846 |
tattggcttggcaaccaaaatggaaatatgcacctaggccaaacccaaacgtgcttgtgtaccaatgctcttcagtttagtttggtagggcttagatctt |
39525747 |
T |
|
| Q |
301 |
agcaataatgtttttgatgtaagataaaatgaaaaaatgaatttgattattagttattttattttctaatacagttttagtccctttatgtaagattgca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39525746 |
agcaataatgtttttgatgtaagataaaatgaaaaaatgaatttgattattagttattttattttctaatacagttttagtccctttatgtaagattgca |
39525647 |
T |
|
| Q |
401 |
gataataaactgata |
415 |
Q |
| |
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||||||||||||||| |
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| T |
39525646 |
gataataaactgata |
39525632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 430 - 551
Target Start/End: Complemental strand, 39525585 - 39525464
Alignment:
| Q |
430 |
ctttgttggaaggattttatcgaccaagcgttgtcatgctttacagcataaactgtgtttcattgaaattttatcatgcggaatattggttttacatgat |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39525585 |
ctttgttggaaggattttatcgaccaagcgttgtcatgctttactgcataaactgtgtttcattgaaattttatcatgcggaatattggttttacatgat |
39525486 |
T |
|
| Q |
530 |
gagttccatggtttcatctcac |
551 |
Q |
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|||||||||||||||||||||| |
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| T |
39525485 |
gagttccatggtttcatctcac |
39525464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 37852206 - 37852113
Alignment:
| Q |
10 |
gcagcctttatttcgcaagattgcttcagccttgcccgggatggaatctct---ttcaacaaagcaagatgacatggttgatgtaaatttaaaa |
100 |
Q |
| |
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||||||||| ||||| ||||||||||| |||||||| ||||||||| | || ||| ||||| | || ||||||||||| |||||||||||| |
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| T |
37852206 |
gcagcctttgtttcgtaagattgcttccgccttgccagggatggaaaccctttcttctacaaataaggaagacatggttgacgtaaatttaaaa |
37852113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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