View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_30 (Length: 261)
Name: NF17523_high_30
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 9539508 - 9539279
Alignment:
| Q |
17 |
aagaacatgatgatttttgaaaagtttggtattagttctcacatagcttttcatgagcaggagctagttggtgtgacatatactgattagaaattatttt |
116 |
Q |
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| T |
9539508 |
aagaacatgatgatttttgaaaagtttgatattagttctcacatagcttttcatgagcaggagctagttggtgtgacatatactgattagaaattatttt |
9539409 |
T |
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| Q |
117 |
ccaattttggccatacatttcatgaatggtaattacaacccacatggcagtgaatcaaaatcaagggtattttagtaactaaacnnnnnnnngctaaaga |
216 |
Q |
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| T |
9539408 |
ccaattttggccatacatttcatgaatggtaattacaacccgcatggcagtcaatcaaaatcaagggtattttagtaactaaac--aaaaaagctaaaga |
9539311 |
T |
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| Q |
217 |
ataggaaatatttctttactttacaaacttct |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
9539310 |
ataggaaatatttctttactttacaaacttct |
9539279 |
T |
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