View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_40 (Length: 234)
Name: NF17523_high_40
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 47581915 - 47581717
Alignment:
| Q |
17 |
gtgagtgtgaaatccaaaatgaaagcaaccaaggcagccaccatcgtgtgtgaagcgaatatgacagtcacaatatcattgaactgaaaatgcattgaaa |
116 |
Q |
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| T |
47581915 |
gtgagtgtgaaatccaaaatgaaagcaaccaaggcagccaccattgtgtgtgaagcgaatatgacagtcacaatatcattgaactgaaaatgcattgaaa |
47581816 |
T |
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| Q |
117 |
tattacggaaatcaatcataaaaatagatagtgnnnnnnnnatatatttatcacgaagttttcaacaattggtttagtttcagataatctcacccatcta |
216 |
Q |
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| T |
47581815 |
tattacggaaatcaatcataaaaatagatagtgttttttt--tatatttatcacgaagttttcaacaattggtttagtttcagataatctcacccatcta |
47581718 |
T |
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