View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_high_41 (Length: 229)

Name: NF17523_high_41
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_high_41
NF17523_high_41
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-211)||(15932-16143)
[»] chr6 (39 HSPs)
chr6 (1-211)||(27715802-27716013)
chr6 (1-211)||(27608422-27608633)
chr6 (1-211)||(27681607-27681818)
chr6 (43-211)||(27695935-27696104)
chr6 (2-203)||(26805159-26805361)
chr6 (107-207)||(26826543-26826643)
chr6 (1-211)||(27674876-27675087)
chr6 (43-211)||(25547627-25547799)
chr6 (113-211)||(28789035-28789133)
chr6 (1-211)||(28795059-28795270)
chr6 (43-211)||(25513525-25513694)
chr6 (43-211)||(26145647-26145816)
chr6 (43-211)||(25485640-25485809)
chr6 (102-211)||(26658632-26658741)
chr6 (102-211)||(26764603-26764712)
chr6 (102-211)||(26638052-26638161)
chr6 (102-211)||(26744018-26744127)
chr6 (26-210)||(26886760-26886945)
chr6 (102-211)||(26980060-26980168)
chr6 (1-84)||(27662674-27662757)
chr6 (124-211)||(27703643-27703730)
chr6 (102-211)||(25076543-25076652)
chr6 (43-211)||(27602067-27602236)
chr6 (1-211)||(26649126-26649337)
chr6 (1-211)||(26755094-26755305)
chr6 (101-211)||(26961761-26961871)
chr6 (154-211)||(25582354-25582411)
chr6 (154-211)||(26058566-26058623)
chr6 (154-211)||(26078536-26078593)
chr6 (38-211)||(26625779-26625956)
chr6 (38-211)||(26731756-26731933)
chr6 (159-211)||(26876224-26876276)
chr6 (25-72)||(26876364-26876411)
chr6 (29-77)||(31287364-31287412)
chr6 (1-83)||(28789164-28789246)
chr6 (43-72)||(26961901-26961930)
chr6 (43-72)||(27590470-27590499)
chr6 (107-211)||(31287226-31287333)
chr6 (100-148)||(26952331-26952379)
[»] chr8 (2 HSPs)
chr8 (1-211)||(29271141-29271352)
chr8 (1-211)||(22023926-22024137)
[»] chr1 (6 HSPs)
chr1 (1-211)||(265633-265844)
chr1 (25-73)||(26138789-26138837)
chr1 (44-83)||(28124969-28125008)
chr1 (102-177)||(28130059-28130134)
chr1 (107-211)||(26138650-26138754)
chr1 (107-183)||(28125033-28125109)
[»] scaffold0277 (3 HSPs)
scaffold0277 (2-211)||(1991-2201)
scaffold0277 (113-211)||(11066-11164)
scaffold0277 (1-83)||(10953-11035)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-211)||(10185-10396)
[»] chr4 (8 HSPs)
chr4 (107-211)||(18696857-18696961)
chr4 (107-211)||(18721528-18721632)
chr4 (107-211)||(18677014-18677118)
chr4 (107-211)||(18728950-18729054)
chr4 (107-211)||(18682171-18682277)
chr4 (107-210)||(18687063-18687166)
chr4 (107-211)||(18726447-18726553)
chr4 (107-211)||(18652932-18653036)


Alignment Details
Target: scaffold0349 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16143 - 15932
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||||| ||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  16143 ggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctcaagggactcgcagtaccccacattaatttca 16044  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||| ||| | |||||| |||| |||||| |||||||||||||||||||| | ||     
T  16043 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaactcttc 15944  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  15943 ggagacattcat 15932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27715802 - 27716013
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||||| ||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  27715802 ggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctcaagggactcgcagtaccccacattaatttca 27715901  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||| ||| | |||||| |||| |||||| |||||||||||||||||||| | ||     
T  27715902 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaactcttc 27716001  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27716002 ggagacattcat 27716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27608422 - 27608633
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| ||| |   ||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |    
T  27608422 ggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccctctaatttcctcaagggactcgcagtccctcacagtaattaga 27608521  T
Q  101 -caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     ||||||||||| |||||||||| |||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||    
T  27608522 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatatgataagtctagacatgtcacattaacaaaccacttgagaagtattg 27608621  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27608622 ggagacattcat 27608633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27681818 - 27681607
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||||||   |   ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |    
T  27681818 ggaactcaatgatttacaatatctagcacaaagctcttttagatttggtggaatccctctaatttcctcaagagactcgcagcacatcacattaatttca 27681719  T
Q  101 -caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     ||||||||||| |||||| ||| |||||||||||||||||||| ||| ||  |||||||||||||| ||||| |||||||||||||||||||| |||||    
T  27681718 acaagatggtgacattcacgaaggcactcaggaagaattttgaaattgctaaatgataagtctagatgtgtcatattaacacaccacttgagaactattg 27681619  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27681618 ggagacattcat 27681607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 27695935 - 27696104
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttt-acaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||  ||||||||| ||||| ||||||||||||    
T  27695935 atttggtggaatccctctaatttcctcaagggacttgcagtacctcacaataatttccacaagatggtgactttcactaaggcactctggaagaattttg 27696034  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || | | ||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  27696035 aaatcgctatatgataaatctagatatgtcatattaacacaccacttgagaagtattgggagacattcat 27696104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 26805361 - 26805159
Alignment:
Q  2 gaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-tttta 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||   ||||||   || || ||  |       
T  26805361 gaactcaatgatttacatccttctgcagaaagctcttttagattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgct 26805262  T
Q  101 caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
     |||||||||| |||||||||| |||||||||||||||||||| ||||| | |||||| ||||| | |   ||||||||||||||||| |||| |||| |    
T  26805261 taagatggtgacattcactaagacactcaggaagaattttgaaattgttgtttgataactctagttcttcaacattaacacaccacttaagaactatttg 26805162  T
Q  201 gag 203  Q
    |||    
T  26805161 gag 26805159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 26826643 - 26826543
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    |||||| ||||||||| |||||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  26826643 ggtgaagttcactaaggcactcaggaataattttgaatttgttccctgataagtctagagatgtcacattaacacaccacttgagaaatatcgggagaca 26826544  T
Q  207 t 207  Q
    |    
T  26826543 t 26826543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27674876 - 27675087
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    |||||||||||||||||||   | ||| ||||||||||| | |||||||||||||||||||||||||||||| ||   ||||||   || |  ||  |      
T  27674876 ggaactcaatgatttacattgatatgcggaaagctctttaagatttggtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgc 27674975  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||  ||  |||||||||||||||||| |||| ||||     
T  27674976 ttaagatggtgacattcactaaggcactcaggaagaattttgaaattgttatgtgataagtctagcaattccacattaacacaccacttaagaactattt 27675075  T
Q  200 ggagacattcat 211  Q
    ||||| ||||||    
T  27675076 ggagatattcat 27675087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25547799 - 25547627
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-tacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||||||||||||||||||||||  | | ||||| | ||| || || || |  |||||||||| |||| ||||| ||||||||||||||| ||    
T  25547799 atttggtggaatccctctaatttcctcaagaaaattgcagttcttcaaataaagttgtttaagatggtgacattcgctaaggcactcaggaagaattgtg 25547700  T
Q  142 aattt---gttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||   ||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25547699 aaattatcgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25547627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 28789133 - 28789035
Alignment:
Q  113 attcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||| || |||||| |||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28789133 attcactaaggcactcaggaataagtttgaaattgttccatgataagtctagatatgtcacataaacacaccacttgagaaatattgggagacattcat 28789035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28795270 - 28795059
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| |||||   ||||||||||  ||  | ||||||||||||||||||||||||||| || |||| |||||    ||   |||  |||    
T  28795270 ggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccctctaatttcctcgagagacttgcagttatccaatctaaggtta 28795171  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||| ||| | |||||||||| |||||||||| || |||||| |||||   ||||||||||||  || ||||||||||||||||||||||||||||||    
T  28795170 ttaagaaggtaacattcactaaggcactcaggaataaatttgaaattgttccatgataagtctagcaatttcacattaacacaccacttgagaaatattg 28795071  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  28795070 ggagacattcat 28795059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25513694 - 25513525
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-ttttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | || |||  || ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  25513694 atttggtggaatccctctaatttcctcaagagccttgcaaaacttcaaataaagatgcttaagacggtgatattcaccaaggcactcgggaagaattgtg 25513595  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25513594 aaattgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25513525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 26145816 - 26145647
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac-aagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | ||||||  || ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  26145816 atttggtggaatccctctaatttcctcaagagcctcgcaaaacttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtg 26145717  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || | ||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26145716 aaatagttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26145647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25485809 - 25485640
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-ttttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | || ||| | | ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  25485809 atttggtggaatccctctaatttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtg 25485710  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||||| |  |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25485709 aaattgttctgcgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26658741 - 26658632
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| |||||||||| ||||| || ||||||||||| ||||| | |||||||| ||||||| |||||||||||||||||||||||| ||||||     
T  26658741 aagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattgga 26658642  T
Q  202 agacattcat 211  Q
    ||||| ||||    
T  26658641 agacagtcat 26658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26764712 - 26764603
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| |||||||||| ||||| || ||||||||||| ||||| | |||||||| ||||||| |||||||||||||||||||||||| ||||||     
T  26764712 aagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattgga 26764613  T
Q  202 agacattcat 211  Q
    ||||| ||||    
T  26764612 agacagtcat 26764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26638161 - 26638052
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| || ||||||| |||||||||||||||||||| |||||| | ||||||| ||   || |||||||| ||||||||||||||| |||||||    
T  26638161 aagaaggtgacatacactaaggcactcaggaagaattttgaaattgttaccagataagtataacaatttcacattagcacaccacttgagaagtattggg 26638062  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26638061 agacattcat 26638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26744127 - 26744018
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| || ||||||| |||||||||||||||||||| |||||| | ||||||| ||   || |||||||| ||||||||||||||| |||||||    
T  26744127 aagaaggtgacatacactaaggcactcaggaagaattttgaaattgttaccagataagtataacaatttcacattagcacaccacttgagaagtattggg 26744028  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26744027 agacattcat 26744018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 26886945 - 26886760
Alignment:
Q  26 gcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac-aagatggtgaaattcactaagcc 124  Q
    |||||||| ||||| | ||||||||| |||||||||||||||||||| |||| ||| |   |||  | || | | | |||| ||||| ||||  |||| |    
T  26886945 gcagaaaggtctttaagatttggtggtatccctctaatttcctcaagagacttgcaatgattcaattcaagtatcctaagaaggtgacattccttaaggc 26886846  T
Q  125 actcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattca 210  Q
    |||| |||||||||||||| ||||| | |||||||||||||| | ||||||||||| ||||||||||||  ||||| |||||||||    
T  26886845 actcgggaagaattttgaaattgttctttgataagtctagatgtttcacattaacaaaccacttgagaagcattggaagacattca 26886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26980168 - 26980060
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||||||||| ||||| |||| |||||||| ||||||||||| ||||| | |  ||||| || |||||||||||||||| |||||||||||| |||||||    
T  26980168 aagatggtgacattcattaaggcactcaggtagaattttgaaattgttgt-tcttaagtttaaatatgtcacattaacaaaccacttgagaagtattggg 26980070  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26980069 agacattcat 26980060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27662674 - 27662757
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagta 84  Q
    |||||||||||||||||||||||||||| |||| | | ||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  27662674 ggaactcaatgatttacatccttctgcataaagatttgttagattgggtggaatccctctaatttcctcaagagactcacagta 27662757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 27703643 - 27703730
Alignment:
Q  124 cactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||||||||||||| ||||| |    |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||    
T  27703643 cactcaggaagaattttgaaattgttgtacattaagtctagagatgtcatattaacacaccacttgagaagtattgggagacattcat 27703730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 25076652 - 25076543
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    ||||||| || |||||||||| ||||| |||||||||||||| |  || |  || |||||||||||| ||||||||||| |||||||||||| ||||||     
T  25076652 aagatggcgacattcactaaggcactcgggaagaattttgaaatcattgttagacaagtctagatatttcacattaacaaaccacttgagaagtattgga 25076553  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  25076552 agacattcat 25076543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 27602067 - 27602236
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaat-tttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||| ||||||||||||||||||  ||| ||||     ||||| ||| |||  |||| ||||| |||||||||| ||||||||||||||||||    
T  27602067 atttggtggaaaccctctaatttcctcaagaaacttgcagccatccacataaatgtttttaagaaggtgacattcactaaggcactcaggaagaattttg 27602166  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||| | || |||||| |||||| |  |||||||||||||||| | |||| |||| ||||| ||||||    
T  27602167 aaattgctctcagataagactagattttccacattaacacaccacattagaagtattcggagaaattcat 27602236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26649337 - 26649126
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||    ||||||||||  ||| | ||||||||||||||| |||||||||||||| ||    |||     |||  ||||||      
T  26649337 ggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctcaagagaggtacagccgtccacgataatttca 26649238  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| ||||||||||  |||| |||||||||||||| ||||| | || |||| |||||| | ||| |||||||||||| ||||||| ||||     
T  26649237 acaagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttgctaagactagatttttcagattaacacaccatttgagaattatta 26649138  T
Q  200 ggagacattcat 211  Q
    |||||| |||||    
T  26649137 ggagactttcat 26649126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26755305 - 26755094
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||    ||||||||||  ||| | ||||||||||||||| |||||||||||||| ||    |||     |||  ||||||      
T  26755305 ggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctcaagagaggtacagccgtccacgataatttca 26755206  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| ||||||||||  |||| |||||||||||||| ||||| | || |||| |||||| | ||| |||||||||||| ||||||| ||||     
T  26755205 acaagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttgctaagactagatttttcagattaacacaccatttgagaattatta 26755106  T
Q  200 ggagacattcat 211  Q
    |||||| |||||    
T  26755105 ggagactttcat 26755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 26961871 - 26961761
Alignment:
Q  101 caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
    ||||| ||||| |||||||||| ||||| |||||||||||||| ||||| |    ||| | |||| |||||||||||||| || ||||||||| ||||||    
T  26961871 caagacggtgacattcactaaggcactcgggaagaattttgaaattgttcttcattaattttagagatgtcacattaacaaacaacttgagaagtattgg 26961772  T
Q  201 gagacattcat 211  Q
    |||||||||||    
T  26961771 gagacattcat 26961761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 25582411 - 25582354
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25582411 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25582354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 26058623 - 26058566
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26058623 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 26078593 - 26078536
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26078593 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26078536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 26625956 - 26625779
Alignment:
Q  38 tttatatttggtggaatccctctaatttcctcaagggactcgcagtacctc-acattaattttac-aagatggtgaaattcactaagccactcaggaaga 135  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  | || | |||||   | | |||| ||||| ||||| |||| || |||||||||    
T  26625956 tttagatttggtggaatccctctaatttcctcaagagactcgcagc-catctaaattaaggatcctaagaaggtgacattcattaaggcattcaggaaga 26625858  T
Q  136 attttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||    |   || || ||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||    
T  26625857 attttgataccgacgttctccgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcat 26625779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 26731933 - 26731756
Alignment:
Q  38 tttatatttggtggaatccctctaatttcctcaagggactcgcagtacctc-acattaattttac-aagatggtgaaattcactaagccactcaggaaga 135  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  | || | |||||   | | |||| ||||| ||||| |||| || |||||||||    
T  26731933 tttagatttggtggaatccctctaatttcctcaagagactcgcagc-catctaaattaaggatcctaagaaggtgacattcattaaggcattcaggaaga 26731835  T
Q  136 attttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||    |   || || ||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||    
T  26731834 attttgataccgacgttctccgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcat 26731756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 26876276 - 26876224
Alignment:
Q  159 gtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  26876276 gtctagatatctcacattaacacaccacttgagaagtagtgggagacattcat 26876224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26876411 - 26876364
Alignment:
Q  25 tgcagaaagctcttttatatttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||    
T  26876411 tgcagaaagcctttctatatttggtggaatccctctaatttcctcaag 26876364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 31287412 - 31287364
Alignment:
Q  29 gaaagctcttttatatttggtggaatccctctaatttcctcaagggact 77  Q
    ||||||||||  | |||||||||||||||||||||||||||||| ||||    
T  31287412 gaaagctcttcaagatttggtggaatccctctaatttcctcaagagact 31287364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28789246 - 28789164
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||| |||||   ||||||||||  |   | ||||||||||||||||||||||||||| || |||| |||||    
T  28789246 ggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttcctccagagacttgcagt 28789164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 26961930 - 26961901
Alignment:
Q  43 atttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||||||||||||||||||||||    
T  26961930 atttggtggaatccctctaatttcctcaag 26961901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 27590470 - 27590499
Alignment:
Q  43 atttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||||||||||||||||||||||    
T  27590470 atttggtggaatccctctaatttcctcaag 27590499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 31287333 - 31287226
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggag 203  Q
    ||||| ||||| |||| ||||| |||||||| ||||| |||   ||||  |||||||||||   | ||||||||||| |||||||||||| |||||| |     
T  31287333 ggtgacattcattaagacactcgggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaa 31287234  T
Q  204 acattcat 211  Q
    ||||||||    
T  31287233 acattcat 31287226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 26952379 - 26952331
Alignment:
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgt 148  Q
    |||||||||||  |||||||||| ||||| |||||||||||||| ||||    
T  26952379 acaagatggtggcattcactaaggcactcgggaagaattttgaaattgt 26952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29271141 - 29271352
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    |||||||||||||| |||   |||  ||||||||||||||| |||||||||||||||||||||||||| ||| || | ||||   |||| ||||||||||    
T  29271141 ggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccctctaatttccttaagagaatggcagccactcatattaatttta 29271240  T
Q  101 caa-gatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     || ||||| || |||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  29271241 taaagatggagacattcactaaggcactcaggaagaattttgaaatagttaaatgataagtctagatatgtcacattaacacaccacttgagaagtattg 29271340  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  29271341 ggagacattcat 29271352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22024137 - 22023926
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| ||| ||  ||||||||||  ||  | |||||||||||||||||||||||||||||  || | ||||     || |||||         
T  22024137 ggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaatttcctcaacagatttgcagcgatccaaattaagaacc 22024038  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    | || | ||||| ||||| |||| ||||| |||||||||||||| |||||||  |||||||||||      || ||||||||| ||||||||||||||||    
T  22024037 caaacaaggtgacattcattaaggcactcgggaagaattttgaaattgttattcgataagtctagcgtaaccatattaacacaacacttgagaaatattg 22023938  T
Q  200 ggagacattcat 211  Q
    |||| |||||||    
T  22023937 ggaggcattcat 22023926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 265633 - 265844
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttt- 99  Q
    |||||||||||| || ||| | |  ||| |||||||||| | ||||||||||||||||||||||||||||||  ||| |||||| ||||| ||||||||     
T  265633 ggaactcaatgagttgcattcatacgcaaaaagctctttaagatttggtggaatccctctaatttcctcaagatacttgcagtaactcacgttaatttta 265732  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||| ||||||| ||| | |    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  265733 acaagatggtgacattcactaaggcactcaggaagagttttgaacttgctcttcattaagtttagatatatcacattaacacaccacttgagaagtattg 265832  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  265833 ggagacattcat 265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 26138837 - 26138789
Alignment:
Q  25 tgcagaaagctcttttatatttggtggaatccctctaatttcctcaagg 73  Q
    |||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  26138837 tgcagaaaacttttttagatttggtggaatccctttaatttcctcaagg 26138789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 28124969 - 28125008
Alignment:
Q  44 tttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  28124969 tttggtggaatccctctaatttcctcaagagacttgcagt 28125008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 28130059 - 28130134
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta 177  Q
    |||||||||| ||||| |||| ||||| |||| || ||| |  |||||||||||||||| ||||||| ||||||||    
T  28130059 aagatggtgacattcattaagacactccggaataacttttatattgttatctgataagtatagatatttcacatta 28130134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 26138754 - 26138650
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| ||||||||||||||||| || |  ||| | | ||||| ||||||  |||||||| ||||| || |||||| |||||| | |||    
T  26138754 ggtgacattcattaaggcactcaggaagaattttaaaatcattacccggtaagtatagatacttcacattagcacacaacctgagaattattggaacaca 26138655  T
Q  207 ttcat 211  Q
    |||||    
T  26138654 ttcat 26138650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 28125033 - 28125109
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacac 183  Q
    ||||| |||||||||| ||||| ||||||||||| |  || || |||||||||  |||| ||||||||||| |||||    
T  28125033 ggtgacattcactaagacactcgggaagaattttcatatttttttctgataagcgtagacatgtcacattagcacac 28125109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 1991 - 2201
Alignment:
Q  2 gaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac 101  Q
    |||||||||||||| |||||   ||||||||||  ||  | ||||||||||||||||||||||||||| || |||| |||||    ||   |||   ||     
T  1991 gaactcaatgatttgcatcccattgcagaaagcatttcaagatttggtggaatccctctaatttcctccagagacttgcagttatccaatataaggatat 2090  T
Q  102 -aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
     |||| ||||| |||||||||| |||||||||| || |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2091 taagaaggtgacattcactaaggcactcaggaataagtttgaaattgttatatgataagtctagagatgtcacattaacacaccacttgagaaatattgg 2190  T
Q  201 gagacattcat 211  Q
    |||||||||||    
T  2191 gagacattcat 2201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 11066 - 11164
Alignment:
Q  113 attcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||| || |||||| |||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11066 attcactaaggcactcaggaataagtttgaaattgttccatgataagtctagatatgtcacataaacacaccacttgagaaatattgggagacattcat 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10953 - 11035
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||| |||||   ||||||||||  |   | ||||||||||||||||||||||||||| || |||| |||||    
T  10953 ggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttcctccagagacttgcagt 11035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 10396 - 10185
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| |||||   ||||||||||  ||  | |||||||| |||||||||||||||||| || |||| |||||    ||   |||  |||    
T  10396 ggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaatttcctccagagacttgcagttatccaatataaggtta 10297  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||| ||||| |||||||||| |||||||||| || |||||| |||||   ||||||||||||  || ||||||||||||||||||||||||||||||    
T  10296 ttaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttccttgataagtctagcaatttcacattaacacaccacttgagaaatattg 10197  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  10196 ggagacattcat 10185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18696857 - 18696961
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  |   ||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||    
T  18696857 ggtgacattcactaaggcactcgggaagaattttgaatttgccaagggataagtttagatatttcacattaacacacgacttgagaactatttggagaca 18696956  T
Q  207 ttcat 211  Q
    |||||    
T  18696957 ttcat 18696961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18721528 - 18721632
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| |||||||||||||||||||| | |  |   |||||||||||| || |||||||||||||| ||||||||| |||| |||||||    
T  18721528 ggtgacattcattaaggcactcaggaagaattttgaaatagccaaaggataagtctagaaatttcacattaacacacgacttgagaactatttggagaca 18721627  T
Q  207 ttcat 211  Q
    |||||    
T  18721628 ttcat 18721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18677014 - 18677118
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| ||||| |||||||||||||| |||  |   |||||||||||| || |||||||||||||| ||||||||| |||| ||||||     
T  18677014 ggtgacattcattaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacaacttgagaactatttggagacc 18677113  T
Q  207 ttcat 211  Q
    |||||    
T  18677114 ttcat 18677118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18728950 - 18729054
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| |||||||||||||||||||| |    |   | |||||||||| || ||||||||| |||||||||||||| |||| |||||||    
T  18728950 ggtgacattcactaaggcactcaggaagaattttgaactgaccaaaggttaagtctagaaatttcacattaatacaccacttgagaactatttggagaca 18729049  T
Q  207 ttcat 211  Q
    |||||    
T  18729050 ttcat 18729054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18682171 - 18682277
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta--acacaccacttgagaaatattgggaga 204  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   |||||||||||| || ||||||||  |||||| ||||||||| |||| |||||    
T  18682171 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacgacttgagaactatttggaga 18682270  T
Q  205 cattcat 211  Q
    |||||||    
T  18682271 cattcat 18682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 18687063 - 18687166
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   ||||||| |||| || |||||||||||||| |||| |||| |||| |||||||    
T  18687063 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtttagaaatttcacattaacacacgacttaagaactatttggagaca 18687162  T
Q  207 ttca 210  Q
    ||||    
T  18687163 ttca 18687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18726447 - 18726553
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta--acacaccacttgagaaatattgggaga 204  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   |||||||||||| || ||||||||  |||||| ||||||||| |||| |||||    
T  18726447 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacaacttgagaactatttggaga 18726546  T
Q  205 cattcat 211  Q
    |||||||    
T  18726547 cattcat 18726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18652932 - 18653036
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| ||||  |||| |||||||||||||| |||  |   ||||||  |||| || |||||||||||||| ||||||||| |||| |||||||    
T  18652932 ggtgacattcattaaggtactcgggaagaattttgaaattgcaacgggataagcttagaaatttcacattaacacacgacttgagaactatttggagaca 18653031  T
Q  207 ttcat 211  Q
    |||||    
T  18653032 ttcat 18653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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