View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_42 (Length: 224)
Name: NF17523_high_42
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_42 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 6226683 - 6226482
Alignment:
| Q |
1 |
tcataaagtgtttgtcatcctcaagnnnnnnncccaggacatcagggatatcgttacgcgcgagnnnnnnncccagtctggctctcctcaagttctcatt |
100 |
Q |
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| T |
6226683 |
tcataaagtgtttgtcatcctcaagtttttttcccaggacattagggatatagttacgcgcgagtttttttcccagtctagctctcctcaagttctcatt |
6226584 |
T |
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| Q |
101 |
accaccgacccccagctttgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtatag |
200 |
Q |
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| T |
6226583 |
accaccgacccccagctttgtggtgcagatgtgcataaagcgtctctgatcgtaaactatgatctcccaactgtgcctgaaaactatcttcaccgtatag |
6226484 |
T |
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| Q |
201 |
gc |
202 |
Q |
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|| |
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| T |
6226483 |
gc |
6226482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 6233867 - 6233740
Alignment:
| Q |
75 |
agtctggctctcctcaagttctcattaccaccgacccccagctttgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaactgt |
174 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
6233867 |
agtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctggtcgtaaactatgatctcccaactgt |
6233768 |
T |
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| Q |
175 |
gcctgaaaactatcttcaccgtataggc |
202 |
Q |
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| T |
6233767 |
gcctgaaaactatcttaaccatataggc |
6233740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 6240967 - 6240841
Alignment:
| Q |
73 |
ccagtctggctctcctcaagttctcattaccaccgacccccagctttgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaact |
172 |
Q |
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| T |
6240967 |
ccagtctggttctcctcagattctcattaccaccgaccccttggtctacggtttagatgtgcaggaagtgtctctggtcataaactatgatctcccaact |
6240868 |
T |
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| Q |
173 |
gtgcctgaaaactatcttcaccgtata |
199 |
Q |
| |
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| T |
6240867 |
ctacctgaaaactatctccaccgtata |
6240841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Complemental strand, 6249291 - 6249243
Alignment:
| Q |
153 |
taaactatgatctcccaactgtgcctgaaaactatcttcaccgtatagg |
201 |
Q |
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| T |
6249291 |
taaactatgatctaccaactcaacctgaaaactatctccaccgtatagg |
6249243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 17545504 - 17545634
Alignment:
| Q |
72 |
cccagtctggctctcctcaagttctcattaccaccgacccccagctttgtggtgcagatgtgcataaagtgtctctgattgtaaactatgatctcccaac |
171 |
Q |
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||||||||||||||||||| |||||||||||||| |||||| | |||||||| |||||||||||||||| |||||||| |||||||||||||||||| | |
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| T |
17545504 |
cccagtctggctctcctcatgttctcattaccacagaccccttggtttgtggtacagatgtgcataaagtatctctgatcgtaaactatgatctcccagc |
17545603 |
T |
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| Q |
172 |
tgtgcctgaaaactatcttcaccgtataggc |
202 |
Q |
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|| |||||||||||||||| | ||||||||| |
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| T |
17545604 |
tgcgcctgaaaactatctttatcgtataggc |
17545634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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