View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_high_46 (Length: 211)
Name: NF17523_high_46
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 19286310 - 19286489
Alignment:
| Q |
11 |
ccctaacaatgtttttaacattcacacaggatagcatcccactatcttacaacaattcccaccaaacaatagtgagaaactttttcacaaaagaactaaa |
110 |
Q |
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| T |
19286310 |
ccctagcaatgtttctaacattcacacaagatagcatcccactatcttacaacaattgccaccaaacaatagcgagaaacttttttagaaaagaattaaa |
19286409 |
T |
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| Q |
111 |
taataacaaatgtatggttgtttatcttaatcaatatcaatttaataaagtgaacttattgctgagaaaacctttcttta |
190 |
Q |
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| T |
19286410 |
taataataaatgtatggctgtttatcttaattaatatcactttaataaagtgaacttattgttgagaaaacctttcttta |
19286489 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 25535944 - 25535981
Alignment:
| Q |
112 |
aataacaaatgtatggttgtttatcttaatcaatatca |
149 |
Q |
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| T |
25535944 |
aataacaaatgtatggttgtatatctttatcaatatca |
25535981 |
T |
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