View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_high_7 (Length: 447)

Name: NF17523_high_7
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_high_7
NF17523_high_7
[»] chr6 (6 HSPs)
chr6 (10-353)||(13228956-13229299)
chr6 (361-434)||(13229369-13229442)
chr6 (392-432)||(18991762-18991802)
chr6 (360-393)||(33344881-33344914)
chr6 (360-432)||(34329811-34329892)
chr6 (360-393)||(35121983-35122016)
[»] chr2 (3 HSPs)
chr2 (346-432)||(16646947-16647042)
chr2 (346-432)||(38561888-38561982)
chr2 (346-390)||(40876964-40877008)
[»] chr3 (5 HSPs)
chr3 (346-428)||(15670964-15671055)
chr3 (391-425)||(52704646-52704680)
chr3 (346-421)||(33510096-33510180)
chr3 (391-432)||(11365147-11365188)
chr3 (391-432)||(47000854-47000895)
[»] chr4 (5 HSPs)
chr4 (348-432)||(7102190-7102283)
chr4 (348-392)||(29369934-29369978)
chr4 (348-393)||(23870095-23870140)
chr4 (348-383)||(15986916-15986951)
chr4 (395-432)||(3643133-3643170)
[»] chr8 (7 HSPs)
chr8 (346-392)||(22486632-22486678)
chr8 (391-432)||(43872607-43872648)
chr8 (346-425)||(26835589-26835677)
chr8 (346-393)||(34142070-34142117)
chr8 (391-432)||(35480990-35481031)
chr8 (346-390)||(13580397-13580441)
chr8 (345-393)||(22930366-22930414)
[»] chr5 (4 HSPs)
chr5 (346-428)||(18626704-18626795)
chr5 (392-434)||(14499062-14499104)
chr5 (360-392)||(502862-502894)
chr5 (346-390)||(3596951-3596995)
[»] chr1 (8 HSPs)
chr1 (346-428)||(15103039-15103130)
chr1 (391-432)||(1240531-1240572)
chr1 (392-433)||(29062353-29062394)
chr1 (346-389)||(1240473-1240516)
chr1 (346-389)||(8246760-8246803)
chr1 (346-392)||(33735787-33735833)
chr1 (346-380)||(34258839-34258873)
chr1 (360-432)||(49762438-49762519)
[»] chr7 (5 HSPs)
chr7 (346-432)||(21828207-21828301)
chr7 (346-392)||(21129364-21129410)
chr7 (346-432)||(3940640-3940734)
chr7 (392-432)||(26914331-26914371)
chr7 (391-431)||(35812715-35812755)
[»] scaffold0001 (1 HSPs)
scaffold0001 (348-392)||(65088-65132)


Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 13228956 - 13229299
Alignment:
Q  10 aatgaacacagtcactattcctccatccacatcatgaatgatattaagtctaaaccatttattataaagattcttagccaccaagtctgtgctgtaatac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13228956 aatgaacacagtcactattcctccatccacatcatgaatgatattaagtctgaaccatttattataaagattcttagccaccaagtctgtgctgtaatac 13229055  T
Q  110 ctcatatctccattgtatattcttagtagcaaagtggttttaccatgttctgcaccatggatctgtgctattgttgcacctgatgttatctttggcacat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  13229056 ctcatatctccattgtatattcttagtagcaaagtggttttaccatgttctgcaccatggatctgtgctatcgtagcacctgatgttatctttggcacat 13229155  T
Q  210 atgcataaccttcaaattgccaaactccagagtggtagtcaagtccctgcatatataacaagttaaatataattttctatgtaaagacagggttggccat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  13229156 atgcataaccttcaaattgccaaactccagagtggtagtcaagtccctgcatatataacaagttaaatataattttctatgtaaagacagggttggtgat 13229255  T
Q  310 gagggcgggcagaaggggcggcagtccaaggcaccatcttttta 353  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||    
T  13229256 gagggcgggcaggaggggcggcagcccaaggcaccattttttta 13229299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 361 - 434
Target Start/End: Original strand, 13229369 - 13229442
Alignment:
Q  361 ttgattaattctattgaaaatatctttttagattataaatgaatcttgtgcaacaaaaaatacaagaagaaatt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13229369 ttgattaattctattgaaaatatctttttagattataaatgaatcttgtgcaacaaaaaatacaagaagaaatt 13229442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 18991802 - 18991762
Alignment:
Q  392 attataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  18991802 attataaatgaatcttgtgcaacaaaaaatgcaagaagaaa 18991762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Original strand, 33344881 - 33344914
Alignment:
Q  360 tttgattaattctattgaaaatatctttttagat 393  Q
    |||||||||||||||||||||||| |||||||||    
T  33344881 tttgattaattctattgaaaatatatttttagat 33344914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 34329892 - 34329811
Alignment:
Q  360 tttgattaattctattgaaaatatctttttaga---------ttataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||||||||||||||||| ||||||||         ||||||||  ||||| ||||||||||||| ||||||||||    
T  34329892 tttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaa 34329811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 393
Target Start/End: Complemental strand, 35122016 - 35121983
Alignment:
Q  360 tttgattaattctattgaaaatatctttttagat 393  Q
    |||||||||||||||||||||||| |||||||||    
T  35122016 tttgattaattctattgaaaatatatttttagat 35121983  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 346 - 432
Target Start/End: Complemental strand, 16647042 - 16646947
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttag---------attataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||| |||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| |||||||||    
T  16647042 tctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataaaagaagaaa 16646947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 38561888 - 38561982
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga---------ttataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||||         |||||||||||| |||||||||||||||||||| ||||||    
T  38561888 tctttttaatttgttttgattaattc-attgaaaatatttttttagagaactttcattataaatgaatattgtgcaacaaaaaatacaaaaagaaa 38561982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 40877008 - 40876964
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttta 390  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||||    
T  40877008 tctttttaacttgtttggattaattctattgaaaatatattttta 40876964  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 15670964 - 15671055
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttta---------gattataaatgaatcttgtgcaacaaaaaatacaagaa 428  Q
    |||||||||| ||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |||||||||    
T  15670964 tctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttgattataaatgaatcttgtgcaacaaaatatacaagaa 15671055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 425
Target Start/End: Complemental strand, 52704680 - 52704646
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaa 425  Q
    |||||||||||||||||||||||||||||||||||    
T  52704680 gattataaatgaatcttgtgcaacaaaaaatacaa 52704646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 421
Target Start/End: Complemental strand, 33510180 - 33510096
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttag---------attataaatgaatcttgtgcaacaaaaaat 421  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||         |||||||||||||||| |||||||||||||    
T  33510180 tctttttaattcgttttgattaattccattgaaaatatatttttagagaactttaattataaatgaatcttttgcaacaaaaaat 33510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 11365147 - 11365188
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||||||| || ||||||||||||| ||||||||||    
T  11365147 gattataaatgaatattttgcaacaaaaaatgcaagaagaaa 11365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 47000895 - 47000854
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||||||| || |||||||||||||| |||||||||    
T  47000895 gattataaatgaatattttgcaacaaaaaatataagaagaaa 47000854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 432
Target Start/End: Original strand, 7102190 - 7102283
Alignment:
Q  348 tttttaatctgttttgattaattctattgaaaatatctttttaga---------ttataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||| ||||||||||||| ||||||||||||  ||||||||         ||||||||||||||||||||||||||| ||||||||||||    
T  7102190 tttttaatttgttttgattaatcctattgaaaatacatttttagagaacttttattataaatgaatcttgtgcaacaaaaagtacaagaagaaa 7102283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 29369978 - 29369934
Alignment:
Q  348 tttttaatctgttttgattaattctattgaaaatatctttttaga 392  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||    
T  29369978 tttttaatttgttttgattaattctattgaaaatatatttttaga 29369934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 23870095 - 23870140
Alignment:
Q  348 tttttaatctgttttgattaattctattgaaaatatctttttagat 393  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||    
T  23870095 tttttaattcgttttgattaattctattgaaaatatatttttagat 23870140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 383
Target Start/End: Complemental strand, 15986951 - 15986916
Alignment:
Q  348 tttttaatctgttttgattaattctattgaaaatat 383  Q
    |||||||| |||||||||||||||||||||||||||    
T  15986951 tttttaatgtgttttgattaattctattgaaaatat 15986916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 432
Target Start/End: Complemental strand, 3643170 - 3643133
Alignment:
Q  395 ataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  3643170 ataaatgaattttgtgcaacaaaaaatccaagaagaaa 3643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 22486678 - 22486632
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga 392  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||    
T  22486678 tctttttaatttgttttgattaattctattgaaaatatcattttaga 22486632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 43872607 - 43872648
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  43872607 gattataaatgaatcttgtgcaacaaaaaatacaaaaagaaa 43872648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 26835677 - 26835589
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga---------ttataaatgaatcttgtgcaacaaaaaatacaa 425  Q
    |||||||||| |  ||| |||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||    
T  26835677 tctttttaattttcttttattaattctattgaaaatatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaatacaa 26835589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 393
Target Start/End: Original strand, 34142070 - 34142117
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttagat 393  Q
    ||||||||||| | |||||||||||||||||||||||| |||| ||||    
T  34142070 tctttttaatccgctttgattaattctattgaaaatatattttcagat 34142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 432
Target Start/End: Complemental strand, 35481031 - 35480990
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||  |||||| ||||||||||||||||||||||||    
T  35481031 gattataaaaaaatcttttgcaacaaaaaatacaagaagaaa 35480990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 13580441 - 13580397
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttta 390  Q
    ||||||||||  | |||||||||||||||||||||||| ||||||    
T  13580441 tctttttaattcgctttgattaattctattgaaaatatattttta 13580397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 22930366 - 22930414
Alignment:
Q  345 atctttttaatctgttttgattaattctattgaaaatatctttttagat 393  Q
    |||||||||||  | ||||||||||||||||||||| || |||||||||    
T  22930366 atctttttaattcgctttgattaattctattgaaaaaatatttttagat 22930414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 18626704 - 18626795
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaa--aatatctttttaga-------ttataaatgaatcttgtgcaacaaaaaatacaagaa 428  Q
    |||||||| | ||||||||||||||||||||||  ||||| |||| |||       ||||||||||||||||||||||||||||||||||||    
T  18626704 tctttttactttgttttgattaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 18626795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 434
Target Start/End: Complemental strand, 14499104 - 14499062
Alignment:
Q  392 attataaatgaatcttgtgcaacaaaaaatacaagaagaaatt 434  Q
    |||||||||||||||| |  |||||||||||||||||||||||    
T  14499104 attataaatgaatctttttgaacaaaaaatacaagaagaaatt 14499062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 392
Target Start/End: Original strand, 502862 - 502894
Alignment:
Q  360 tttgattaattctattgaaaatatctttttaga 392  Q
    |||||||||||||||||||||||| ||||||||    
T  502862 tttgattaattctattgaaaatatatttttaga 502894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 3596995 - 3596951
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttta 390  Q
    ||||||||||  |||||||||||||||||| ||||||| ||||||    
T  3596995 tctttttaattcgttttgattaattctattaaaaatatattttta 3596951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 15103130 - 15103039
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaa--aatatcttt-------ttagattataaatgaatcttgtgcaacaaaaaatacaagaa 428  Q
    |||||||| | ||||||||||||||||||||||  ||||| |||       || ||||||||||||||||||||||||||||||||||||||    
T  15103130 tctttttactttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaatacaagaa 15103039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 1240531 - 1240572
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    ||||||||||||||||| ||||||||||||| ||||||||||    
T  1240531 gattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 1240572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 29062394 - 29062353
Alignment:
Q  392 attataaatgaatcttgtgcaacaaaaaatacaagaagaaat 433  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  29062394 attataaataaatcttttgcaacaaaaaatacaagaagaaat 29062353  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 1240473 - 1240516
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttt 389  Q
    ||||||||||| | |||||||||||||||||||||||| |||||    
T  1240473 tctttttaatccgctttgattaattctattgaaaatatattttt 1240516  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 8246803 - 8246760
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttt 389  Q
    |||||||||| || |||||||||||||||||||||||| |||||    
T  8246803 tctttttaatttgatttgattaattctattgaaaatatattttt 8246760  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 33735833 - 33735787
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga 392  Q
    |||||||||| || ||||||||||| |||||||||||| ||||||||    
T  33735833 tctttttaatttggtttgattaattatattgaaaatatatttttaga 33735787  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 34258839 - 34258873
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaa 380  Q
    ||||||||| |||||||||||||||||||||||||    
T  34258839 tctttttaacctgttttgattaattctattgaaaa 34258873  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 432
Target Start/End: Complemental strand, 49762519 - 49762438
Alignment:
Q  360 tttgattaattctattgaaaatatcttttta---------gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||||||||||||||||| ||||||         |||||||||||| | ||||| ||||||||||| |||||||||    
T  49762519 tttgattaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaa 49762438  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 432
Target Start/End: Original strand, 21828207 - 21828301
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga---------ttataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||  ||||||||||||| |||||||||||| |||||||||         |||||||||||||||||||||||||||||| |||| ||||    
T  21828207 tctttttaacttgttttgattaatgctattgaaaata-ctttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaa 21828301  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 392
Target Start/End: Complemental strand, 21129410 - 21129364
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatctttttaga 392  Q
    |||||||||| || |||||||||||||||||||||||| ||||||||    
T  21129410 tctttttaatttggtttgattaattctattgaaaatatttttttaga 21129364  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 432
Target Start/End: Complemental strand, 3940734 - 3940640
Alignment:
Q  346 tctttttaatctgttttgattaattctattgaaaatatcttttta---------gattataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    |||||||||| |  |||||||||||||||| ||||||||||||||         |||||||||| ||||||||||||| |||||||||| ||||||    
T  3940734 tctttttaatttactttgattaattctatttaaaatatctttttaaagaactttgattataaataaatcttgtgcaac-aaaaatacaaaaagaaa 3940640  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 26914371 - 26914331
Alignment:
Q  392 attataaatgaatcttgtgcaacaaaaaatacaagaagaaa 432  Q
    ||||||||||||| || ||||||||||||| ||||||||||    
T  26914371 attataaatgaatattttgcaacaaaaaatgcaagaagaaa 26914331  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 35812715 - 35812755
Alignment:
Q  391 gattataaatgaatcttgtgcaacaaaaaatacaagaagaa 431  Q
    |||||||||||||| || ||||||||||||| |||||||||    
T  35812715 gattataaatgaatattttgcaacaaaaaatgcaagaagaa 35812755  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 392
Target Start/End: Original strand, 65088 - 65132
Alignment:
Q  348 tttttaatctgttttgattaattctattgaaaatatctttttaga 392  Q
    |||||||| || |||||||||||||||||||||||| || |||||    
T  65088 tttttaatttgctttgattaattctattgaaaatatattgttaga 65132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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