View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_high_9 (Length: 416)

Name: NF17523_high_9
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_high_9
NF17523_high_9
[»] chr5 (5 HSPs)
chr5 (20-300)||(4175836-4176119)
chr5 (297-385)||(14591840-14591928)
chr5 (297-390)||(30917461-30917554)
chr5 (297-385)||(19828629-19828717)
chr5 (82-155)||(4171822-4171895)
[»] chr3 (2 HSPs)
chr3 (297-385)||(40396829-40396917)
chr3 (313-372)||(50232689-50232747)
[»] chr4 (3 HSPs)
chr4 (312-401)||(25871128-25871217)
chr4 (297-401)||(25506234-25506338)
chr4 (312-401)||(16748843-16748932)
[»] chr6 (1 HSPs)
chr6 (297-401)||(31121161-31121265)
[»] chr1 (1 HSPs)
chr1 (312-385)||(50052797-50052870)
[»] chr2 (1 HSPs)
chr2 (313-402)||(13007955-13008044)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 300
Target Start/End: Complemental strand, 4176119 - 4175836
Alignment:
Q  20 ggtaatttaattcgttacctttttatttttatcccttgccttgttgcacaattcttatatcagttcataaattcggctgtacaggatagtgctgaaatct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4176119 ggtaatttaattcgttacctttttatttttatcccttgccttgttgcacaattcttatatcagttcataaattcggctgtacaggatagtgctgaaatct 4176020  T
Q  120 gaggatggaaaagaactacgtgctttaaatttca---aaaaggacgaaaggtatataattatatatggtcaataatatatgtggtgtgcattgcatagga 216  Q
    ||||||||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4176019 gaggatggaaaagaactacgtgctttaaatttcaaagaaaaggacggaaggtatataattatatatggtcaataatatatgttgtgtgcattgcatagga 4175920  T
Q  217 tggtctcttatcttagatatttatcatttatcattattggtttttgctccggtacaccaaaaaacactacattgcttaggaatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  4175919 tggtctcttatcttagatatttatcatttatcattattggtttttgctacggtacaccaaaaaactctacattgcttaggaatt 4175836  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 14591840 - 14591928
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 385  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| || ||| |||||||||| ||||||||||||    
T  14591840 aatttcctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatctgaataaatcttagcccttcattcatttt 14591928  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 390
Target Start/End: Complemental strand, 30917554 - 30917461
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgt 390  Q
    ||||| ||||| || |||| |||||||||||| ||||| |||||| |||||||| ||| |||||||||||||| || |||||||||||||||||    
T  30917554 aattttctcctattttctcgagtgaaataatcttagccgtccatttcttttaatgacatcttaattaatcttaacccttcattcattttaatgt 30917461  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 385
Target Start/End: Original strand, 19828629 - 19828717
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 385  Q
    ||||||||| |||| ||||| ||||||||||| ||||| ||||| | ||||||||||| ||||| |||| |||||| ||||||||||||    
T  19828629 aatttcctcatgttttctcctgtgaaataatcttagccgtccatccattttaataacatcttaactaattttagcccttcattcatttt 19828717  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 155
Target Start/End: Complemental strand, 4171895 - 4171822
Alignment:
Q  82 gttcataaattcggctgtacaggatagtgctgaaatctgaggatggaaaagaactacgtgctttaaatttcaaa 155  Q
    ||||||||  || |||||||||||| ||| |||| ||||||||||||| |||||||||||| || |||||||||    
T  4171895 gttcataatatcagctgtacaggatggtggtgaagtctgaggatggaagagaactacgtgccttcaatttcaaa 4171822  T

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Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 385
Target Start/End: Complemental strand, 40396917 - 40396829
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 385  Q
    ||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  40396917 aattttctcctgttttctcctgtgaaataatcttagccatccattccttttaatgacatcttaattaatcttagtccttcattcatttt 40396829  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 50232747 - 50232689
Alignment:
Q  313 ctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcc 372  Q
    |||| ||||||||||| || |||||||||| ||||||| ||| |||||||||||||||||    
T  50232747 ctcctgtgaaataatcttaaccatccattc-ttttaatgacatcttaattaatcttagcc 50232689  T

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Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 25871128 - 25871217
Alignment:
Q  312 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcat 401  Q
    ||||| ||||||||||| || || ||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||| |||||||    
T  25871128 tctcctgtgaaataatcttaaccgtccattccttttaatgacaccttaactaatctcagcctttcattcatttcaatgtgtcattttcat 25871217  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 25506234 - 25506338
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgtt 396  Q
    |||||||||| ||| ||||| |||||  |||| ||||| |||||| |||||||| | |||||||||||||| |||| |||||||||||||||||||| ||    
T  25506234 aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagcccttcattcattttaatgtgtcatt 25506333  T
Q  397 ttcat 401  Q
    |||||    
T  25506334 ttcat 25506338  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 401
Target Start/End: Original strand, 16748843 - 16748932
Alignment:
Q  312 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcat 401  Q
    ||||| ||||||||||| ||| | ||||||| ||||||| ||||||||| |||||| || ||||||||||||| |||||||| |||||||    
T  16748843 tctcctgtgaaataatcttagtcgtccattctttttaatgacaccttaactaatctcagtctttcattcatttcaatgtgtcattttcat 16748932  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 401
Target Start/End: Complemental strand, 31121265 - 31121161
Alignment:
Q  297 aatttcctcctgttatctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgtt 396  Q
    |||||||||| ||| ||||| |||||  |||| ||||| |||||| |||||||| | |||||||||||||| |||| |||||||||||||||||||| ||    
T  31121265 aatttcctccagttttctcctgtgaatcaatcttagccgtccatttcttttaatgaaaccttaattaatctcagcccttcattcattttaatgtgtcatt 31121166  T
Q  397 ttcat 401  Q
    |||||    
T  31121165 ttcat 31121161  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 50052797 - 50052870
Alignment:
Q  312 tctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcatttt 385  Q
    ||||| |||||||||||  |||||||||||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  50052797 tctcctgtgaaataatctcagccatccattccttttaatgacatcttaattaatcttagtccttcattcatttt 50052870  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 402
Target Start/End: Complemental strand, 13008044 - 13007955
Alignment:
Q  313 ctccagtgaaataatcctagccatccattccttttaataacaccttaattaatcttagcctttcattcattttaatgtgtcgttttcatc 402  Q
    |||||||||||||||  | ||  ||||||||||||||| ||||||||| | ||||||||| |||||||||||||| ||||| || |||||    
T  13008044 ctccagtgaaataattttggctgtccattccttttaatgacaccttaactgatcttagcccttcattcattttaacgtgtcattgtcatc 13007955  T

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