View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17523_low_11 (Length: 404)
Name: NF17523_low_11
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_11 |
 | |
|
| [»] scaffold0649 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0649 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 6027 - 5883
Alignment:
| Q |
243 |
ataatgtacttttcatgcttcgannnnnnnaatacgtttgtagaccaacccggtaacgaatttccaaaagggagtgaataatgtaccttgaacaatttca |
342 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6027 |
ataatgtacttttcatgcttcggtttttttaatacgtttgtagaccaacccggtaacgaatttccaaaagggagggaataatgtaccttgaacaatttca |
5928 |
T |
|
| Q |
343 |
tcttcatagttataataaatataagaaaaacaaaagtttattcat |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5927 |
tcttcatagttataataaatataagaaaaacaaaagtttattcat |
5883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 118 - 244
Target Start/End: Complemental strand, 6199 - 6074
Alignment:
| Q |
118 |
aaatacagtcctatacatgtaccaagagttgtgtttacatagattctatgacaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
217 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6199 |
aaatacagtc-tatacatgtaccaagagttgtgtttacatagattctatggcaatatcagaagaacaacaatatccaagaattggtgtagaaataaagta |
6101 |
T |
|
| Q |
218 |
attctcacttcatgaatcattatggat |
244 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6100 |
attctcacttcatgaatcattatggat |
6074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 6317 - 6219
Alignment:
| Q |
22 |
cttgtgcttgaagttgcgttgtagacctacaacgcacaaaaatagaacagaaacacgagnnnnnnnntaaatgcataattcaatatcggaagaaagaaat |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6317 |
cttgtgcttgaagttgggttgtagacctacaacgcacaaaaatagaacagaaacacgag--aaaaaataaatgcataattcaatatcggaagaaagaaat |
6220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 20968400 - 20968346
Alignment:
| Q |
190 |
atccaagaattggtgtagaaataaagtaattctcacttcatgaatcattatggat |
244 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20968400 |
atccaagaactggtgtagaaataaagtaattctcacttcatgaatcatcatggat |
20968346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University