View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_low_15 (Length: 388)

Name: NF17523_low_15
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_low_15
NF17523_low_15
[»] chr8 (6 HSPs)
chr8 (13-373)||(32709643-32710003)
chr8 (57-372)||(32703930-32704249)
chr8 (63-371)||(7297866-7298174)
chr8 (64-175)||(32627903-32628014)
chr8 (63-194)||(7293569-7293700)
chr8 (297-371)||(32627707-32627781)
[»] chr6 (2 HSPs)
chr6 (57-245)||(21943681-21943869)
chr6 (19-214)||(20115752-20115947)
[»] chr4 (1 HSPs)
chr4 (57-194)||(5811529-5811666)
[»] chr3 (1 HSPs)
chr3 (57-361)||(27736681-27736985)
[»] chr5 (1 HSPs)
chr5 (66-127)||(8028972-8029033)


Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 32710003 - 32709643
Alignment:
Q  13 gagatgaagccataactagtctctactgcagtgcatacccaaatagcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggt 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32710003 gagaagaagccataactagtctctactgcagtgcatacccaaatagcttagcaattgcagacttgggttgctcttctgggccaaacactttgttggtggt 32709904  T
Q  113 atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32709903 atcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacgatttgccgggtaacgacttc 32709804  T
Q  213 aataacatctttagatctcttgataacttcaaaaagagactgcacggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709803 aataacatctttagatctcttgataacttcaaaaagagactgcacggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctt 32709704  T
Q  313 tctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttat 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32709703 tctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagccttat 32709643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 57 - 372
Target Start/End: Complemental strand, 32704249 - 32703930
Alignment:
Q  57 agcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 156  Q
    ||||| ||||||||||| ||||||||||||| ||| |||||||||||||| | | | |||||   ||||||||| ||||||||| ||||||||||| | |    
T  32704249 agcttggcaattgcagatttgggttgctcttatggaccaaacactttgttggcgatctcagatactatcaaggttgtggaaaagatttgtcgagagctta 32704150  T
Q  157 atcatgaatctcccgaataca----aggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagac 252  Q
    ||||| ||||||| ||||| |    ||||||| ||||||||| | || || ||||||||||| ||  | ||||| || || || |  |||||| | |  |    
T  32704149 atcataaatctcctgaatatatataaggtctttttgaacgatctaccagggaacgacttcaacaatgtatttaggtccctcgacacgttcaaagaaaatc 32704050  T
Q  253 tgcacggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgt 352  Q
    | || | |||||  ||||| |||||||  |  || ||  | | ||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  32704049 tacaggctgaaatggaaaccgaaatggtaccttgctacttctttggggttcccggttccttctatggcaggatttttcctaataaaagtttgcattttgt 32703950  T
Q  353 ccattcctcttacagcctta 372  Q
     ||||||||||| |||||||    
T  32703949 tcattcctcttatagcctta 32703930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 371
Target Start/End: Complemental strand, 7298174 - 7297866
Alignment:
Q  63 gcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatg 162  Q
    ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||  |||||| ||| ||||| |||||||| | | | ||||| |||     
T  7298174 gcaattgcagatttaggttgttcttctggaccaaacactttgtttgtggtatcagatattatcatggttgtggagaagctttgccaacaattgaaccatt 7298075  T
Q  163 aatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgcacggtga 262  Q
     ||||||||| |||||| | || || || ||| |  | || || |||||||| ||||| ||||  || ||||| ||||| ||| ||| |||||| | |||    
T  7298074 catctcccgagtacaagatattttttaatgatgtttctggaaatgacttcaacaacatatttaagtcacttgacaactttaaagagaaactgcaagatga 7297975  T
Q  263 aacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctct 362  Q
    ||   ||||| |||||  |   || ||  | | ||| |||||||||||||||||| | ||  |||||||||||| |||||| |||||  | |||||||||    
T  7297974 aatcaaaactaaaatgagttcttgctacttttttggggttcctggttctttctatagtagagtttttcctaatcgaagtttacatttcattcattcctct 7297875  T
Q  363 tacagcctt 371  Q
     ||||||||    
T  7297874 cacagcctt 7297866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 32628014 - 32627903
Alignment:
Q  64 caattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatga 163  Q
    ||||||||||||| ||||||||||||||  ||||||||||||| ||| | | |||  ||||||| || |||||||||||||||||| |  | |||||| |    
T  32628014 caattgcagacttaggttgctcttctggatcaaacactttgttggtgatcttagatattatcaaagttgtggaaaagctttgtcgaaaacttaatcataa 32627915  T
Q  164 atctcccgaata 175  Q
    ||||||||||||    
T  32627914 atctcccgaata 32627903  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 194
Target Start/End: Complemental strand, 7293700 - 7293569
Alignment:
Q  63 gcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttgaatcatg 162  Q
    |||||||||||  ||||||| |||| ||| | ||||||||||| |||||| |||||| | |||| ||| ||||| |||||||| | | | |||||  |||    
T  7293700 gcaattgcagatctgggttgttcttgtggacaaaacactttgtctgtggtgtcagaaatcatcatggttgtggagaagctttgccaacaattgaaatatg 7293601  T
Q  163 aatctcccgaatacaaggtcttcttgaacgat 194  Q
     |||||||||||||||| |||| || ||||||    
T  7293600 catctcccgaatacaagatcttttttaacgat 7293569  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 32627781 - 32627707
Alignment:
Q  297 ggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccattcctcttacagcctt 371  Q
    |||||||||||||| ||  |||| || |||||||||  |||||||||||||||||| ||||||||||| ||||||    
T  32627781 ggagttcctggttcctttcatggtagaatttttcctcttcaaagtttgcattttgttcattcctcttatagcctt 32627707  T

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Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 57 - 245
Target Start/End: Complemental strand, 21943869 - 21943681
Alignment:
Q  57 agcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 156  Q
    ||||||||  |||||||||||||||| |||||||| | ||| |||||||| ||| | || ||  |||| || || |||||||||||||||| ||||||||    
T  21943869 agcttagccgttgcagacttgggttgttcttctggactaaatactttgttggtgatctcggagattataaatgttgtggaaaagctttgtcaagagttga 21943770  T
Q  157 atcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaa 245  Q
    ||||||||||||||||||| ||||| || ||||||||| | ||||| ||||| ||||| ||| | ||||| || ||||| | |||||||    
T  21943769 atcatgaatctcccgaatataaggtatttttgaacgatctacccggaaacgatttcaacaacgtatttaggtcccttgagaccttcaaa 21943681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 20115752 - 20115947
Alignment:
Q  19 aagccataactagtctctactgcagtgcatacccaaatagcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcaga 118  Q
    |||||||||| |  ||||||||||||  ||| ||||  || || ||| |||||||||| ||||||||||| || |||||||| ||||| ||| | |||||    
T  20115752 aagccataaccaacctctactgcagtctatatccaagaagattcgcagttgcagacttaggttgctcttcaggaccaaacaccttgttggtgatctcaga 20115851  T
Q  119 atttatcaaggtcgtggaaaagctttgtcgagagttgaatcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaa 214  Q
    | |||||||||| |||||||||||||||  ||| ||||||||||||||||| |||||  | ||||  ||||||||| |  |||| |||||||||||    
T  20115852 aattatcaaggttgtggaaaagctttgtatagaattgaatcatgaatctcctgaatatgatgtctctttgaacgatctatccggaaacgacttcaa 20115947  T

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Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 57 - 194
Target Start/End: Complemental strand, 5811666 - 5811529
Alignment:
Q  57 agcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 156  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||||| || ||| | || ||| |||||||||| || |||||||||||||||||  | |    
T  5811666 agcttggcaattgcagacttgggttgctcttttggaccaaacactttcttggtgatctctgaaattatcaaggttgttgaaaagctttgtcgagaactta 5811567  T
Q  157 atcatgaatctcccgaatacaaggtcttcttgaacgat 194  Q
    ||||| ||||||||||||| || ||||| |||||||||    
T  5811566 atcataaatctcccgaatataaagtctttttgaacgat 5811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 361
Target Start/End: Complemental strand, 27736985 - 27736681
Alignment:
Q  57 agcttagcaattgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaaggtcgtggaaaagctttgtcgagagttga 156  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||| |||||||| ||||||| |  |||||||| ||||||| || |        
T  27736985 agcttggcaattgcagacttgggttgctcttttgggccaaacactatgttggtgatatcagaaattatcaaaggtgtggaaaaactttgtcaagtgcatc 27736886  T
Q  157 atcatgaatctcccgaatacaaggtcttcttgaacgatttgcccggtaacgacttcaataacatctttagatctcttgataacttcaaaaagagactgca 256  Q
    ||||| ||||||| ||||| || || || ||||| ||| | || || || |||||||| ||| | || |  || ||||| | ||||||| ||| ||| |     
T  27736885 atcataaatctcctgaatataaagtatttttgaatgatctaccgggaaatgacttcaacaacgtattcaagtcccttgacaccttcaaagagaaactacg 27736786  T
Q  257 cggtgaaacagaaactgaaatggatcagtgttatatatctggagttcctggttctttctatggcaggatttttcctaatcaaagtttgcattttgtccat 356  Q
     | |||||  |||||| |||| |  | ||| ||  | | ||||||||||||||| || |||||||| ||||||||  || | |||||||||||||| |||    
T  27736785 tgatgaaatggaaactaaaataggcccgtgctacttctatggagttcctggttcattttatggcagaatttttccagataatagtttgcattttgttcat 27736686  T
Q  357 tcctc 361  Q
    |||||    
T  27736685 tcctc 27736681  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 8028972 - 8029033
Alignment:
Q  66 attgcagacttgggttgctcttctgggccaaacactttgtttgtggtatcagaatttatcaa 127  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| |||| ||| |||||||    
T  8028972 attgcagatttgggttgttcttctgggccaaacactttgttggtgatatctgaagttatcaa 8029033  T

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