View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_16 (Length: 384)
Name: NF17523_low_16
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 64 - 369
Target Start/End: Complemental strand, 758425 - 758120
Alignment:
| Q |
64 |
gatagtataactttgccataattatattattagaactcaaaataggnnnnnnntaattttcacaaatcgtatcatcaaggaacacataaaagtgttcaat |
163 |
Q |
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| T |
758425 |
gatagtataactttgccataattatattattagaactcaaaataggaagaaaaaaaaattcacaaatcgtatcatcaaggaacacataaaagtgttcaat |
758326 |
T |
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| Q |
164 |
atggtctactgtttcagtggaaaagacttttgtacaacgcatttaggcaaagaaggagaggagatagatacttaagcatcatataggattgcttattgat |
263 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758325 |
atgatctactgtttcagtggaaaagacttttgtacaacgcatttaggcaaagaaggagaggagatagatacttaagcatcatataggattgcttattgat |
758226 |
T |
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| Q |
264 |
gaagtctccactattgctattaccttactatatttatcatctatgcaaatatttaccatgttttcttataatttaaatgaagttaaaaattctatgttga |
363 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758225 |
gaagtctccactattgctattaccttactatattcatcatctatgcaaatatttactatgttttcttataatttaaatgaagttaaaaattctatgttga |
758126 |
T |
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| Q |
364 |
tataag |
369 |
Q |
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|||||| |
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| T |
758125 |
tataag |
758120 |
T |
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