View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_17 (Length: 380)
Name: NF17523_low_17
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 51108924 - 51109158
Alignment:
| Q |
1 |
gtttcatattttctttctctgctacttaaaaattgctttaatataatcattctctaacaagcctcgagataccaatccttctatatcctatatccttgaa |
100 |
Q |
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| T |
51108924 |
gtttcatattttctttctctgctacttaaaaattgctttaatataatcattctctagcaagcctcgagatatcaatcctt-------ctatatccttaaa |
51109016 |
T |
|
| Q |
101 |
ataaaatatggtgagataagaaactctttaaaatttagagaactnnnnnnntgttattgannnnnnnctaacattgaaattgtatgacatgtc------- |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
51109017 |
ataaaatatggtgagataagaaactctttaaaatttagagaactaaaaaaatgttattgatttttttctaacattgaaattgtatgacatgtcaaagaca |
51109116 |
T |
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| Q |
194 |
----agtagagtttacatactagtctttctttttttgataac |
231 |
Q |
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||||||||||||||| |||||||||| ||||||||||| |
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| T |
51109117 |
tgtaagtagagtttacatattagtctttctctttttgataac |
51109158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 272 - 377
Target Start/End: Original strand, 51109199 - 51109304
Alignment:
| Q |
272 |
caaactaaggtcaaataaatgcaacgtttatgctaaaaagatacggatcatgtcaggagggatttcatacaaaataacaagactatatcacttagttaga |
371 |
Q |
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||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
51109199 |
caaactaaggttaaataaatgcaacgtatatactaaaaagacacggatcatgtcaggaagggtttcatacaaaataacaagactatatcacttagttaga |
51109298 |
T |
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| Q |
372 |
gaataa |
377 |
Q |
| |
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||||| |
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| T |
51109299 |
aaataa |
51109304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 34945804 - 34945753
Alignment:
| Q |
1 |
gtttcatattttctttctctgctacttaaaaattgctttaatataatcattct |
53 |
Q |
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|||| ||||||||||||| ||||| |||||||| | ||||||||||||||||| |
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| T |
34945804 |
gtttaatattttctttctttgctatttaaaaatcg-tttaatataatcattct |
34945753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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