View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_low_18 (Length: 367)

Name: NF17523_low_18
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_low_18
NF17523_low_18
[»] chr1 (5 HSPs)
chr1 (17-353)||(48982755-48983106)
chr1 (153-274)||(21182964-21183085)
chr1 (153-263)||(14321030-14321140)
chr1 (197-279)||(1656752-1656834)
chr1 (153-263)||(24084142-24084252)
[»] chr3 (6 HSPs)
chr3 (164-274)||(37288650-37288759)
chr3 (156-271)||(53256578-53256693)
chr3 (188-274)||(8557612-8557698)
chr3 (215-266)||(11083274-11083323)
chr3 (166-263)||(34809154-34809251)
chr3 (187-232)||(37509267-37509312)
[»] chr6 (4 HSPs)
chr6 (192-274)||(2660349-2660431)
chr6 (189-274)||(31238355-31238440)
chr6 (189-274)||(31247725-31247810)
chr6 (195-279)||(9062845-9062929)
[»] chr5 (1 HSPs)
chr5 (150-274)||(32565918-32566042)
[»] chr4 (8 HSPs)
chr4 (163-269)||(11777164-11777271)
chr4 (195-279)||(52708486-52708570)
chr4 (195-279)||(779775-779860)
chr4 (189-274)||(10519582-10519667)
chr4 (225-274)||(43525649-43525698)
chr4 (153-274)||(53920190-53920311)
chr4 (198-246)||(16467873-16467921)
chr4 (164-252)||(53599339-53599427)
[»] chr8 (5 HSPs)
chr8 (156-274)||(4305325-4305442)
chr8 (182-274)||(7671716-7671807)
chr8 (189-268)||(32668106-32668185)
chr8 (188-265)||(26040143-26040220)
chr8 (155-202)||(43623599-43623646)
[»] chr2 (6 HSPs)
chr2 (166-265)||(33500081-33500180)
chr2 (222-275)||(26296836-26296889)
chr2 (221-274)||(42491804-42491857)
chr2 (153-252)||(5963946-5964045)
chr2 (151-275)||(8257222-8257348)
chr2 (215-279)||(37807297-37807361)
[»] chr7 (4 HSPs)
chr7 (187-265)||(31211884-31211962)
chr7 (189-274)||(41750647-41750732)
chr7 (162-266)||(10701648-10701753)
chr7 (153-247)||(41750468-41750562)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 48983106 - 48982755
Alignment:
Q  17 acaaattactttcatggaatggcaaccatggcattaaggatcaagtaagtataaggttgggaaggaactagctatctttattttgtcaagaaattacgat 116  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  48983106 acaaattactttaaaggaatggcaaccatggcattaaggatcaagtaagtataaggttgggaaagaactagctatcttt-ttttgtcaagaaattacgat 48983008  T
Q  117 aataatattgcttattttttataggaaaatgttaaatagt----------------taaatagattaatataaaaattttatattaagaaatgatgaaaa 200  Q
    |||||||||||||||||||||||| |||||||||||||||                |||| ||||||||||| |||||||| ||||| ||||||||||||    
T  48983007 aataatattgcttattttttatagaaaaatgttaaatagtactccaggacatcaactaaagagattaatatagaaattttacattaaaaaatgatgaaaa 48982908  T
Q  201 gttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatttcaatacnnnnnnnattcatt 300  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  48982907 gttgaatgtttcgttttataaaagtaaaaaagttattgtttttaatagaaaatttctatttttaactttcttaatcatttcaatactttttttattcatt 48982808  T
Q  301 acaacaataaccgagtannnnnnnnngaaaaagaaataataaccaagtattat 353  Q
    |||||||||||||||||         || ||||||||||||||| ||||||||    
T  48982807 acaacaataaccgagtatttttttttgagaaagaaataataacccagtattat 48982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 21183085 - 21182964
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    |||||||  |||||||||| |||| |||  |||  ||||||||||||| | ||||||| |  |||| |||||| |||||||| |||  ||||||| || |    
T  21183085 tagttaagaagattaatatgaaaactttgcattgggaaatgatgaaaaatggaatgttccactttagaaaagtcaaaaagttgttgtctttaataaaaga 21182986  T
Q  253 tttctatttttaactttcttaa 274  Q
    ||| ||||||||||||||||||    
T  21182985 tttatatttttaactttcttaa 21182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 263
Target Start/End: Complemental strand, 14321140 - 14321030
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    |||||||  ||||||||||| ||||| |  ||| | || |||||||||||  |||||||  |||||| |||||||||||||| ||| |||||||  |||     
T  14321140 tagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagtaaaaaagttgttgtttttaatgaaaat 14321041  T
Q  253 tttctattttt 263  Q
    |||||||||||    
T  14321040 tttctattttt 14321030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 1656834 - 1656752
Alignment:
Q  197 aaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 279  Q
    |||||| ||||||||   |||||||||||||||||| | ||| |||||||| ||  |||||||||||||| | |||| |||||    
T  1656834 aaaagtggaatgtttaaatttataaaagtaaaaaaggtgttgtttttaataaaatttttctatttttaacatccttagtcatt 1656752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 24084142 - 24084252
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    |||||||| ||||||||||||||||| | |||| | || |||| |||||| ||||||||   ||||| ||||| ||||| || ||| |||| ||  |||     
T  24084142 tagttaaaaagattaatataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaagtcaaaaaattgttgtttttgatgaaaat 24084241  T
Q  253 tttctattttt 263  Q
    |||||||||||    
T  24084242 tttctattttt 24084252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 274
Target Start/End: Original strand, 37288650 - 37288759
Alignment:
Q  164 attaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctattttt 263  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||| | ||||| |||||| |||||||||| |  ||||||| |||| ||||||||||    
T  37288650 attaatataaaaattttgtattgaaaaatgatgaaaagttgaatgttccattttaaaaaagtcaaaaagttatcgtctttaata-aaaaattctattttt 37288748  T
Q  264 aactttcttaa 274  Q
    |||||| ||||    
T  37288749 aacttttttaa 37288759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 53256693 - 53256578
Alignment:
Q  156 ttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaattt 255  Q
    ||||| ||||||| ||  |||||||  ||||| || |||| ||||||  ||||||||  ||||| ||||| ||||| |||||| |||||||| |||||||    
T  53256693 ttaaagagattaaaatggaaattttgcattaaaaagtgataaaaagtaaaatgtttcaatttatgaaagtcaaaaaattattgtttttaatataaaattt 53256594  T
Q  256 ctatttttaactttct 271  Q
    ||| ||||||||||||    
T  53256593 ctacttttaactttct 53256578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 8557612 - 8557698
Alignment:
Q  188 gaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||||||||||||| |||||||||  |||| |||||| || ||||| |||  ||||||| ||| ||||||||| ||||||||||||    
T  8557612 gaaatgatgaaaagtggaatgtttcactttagaaaagtcaataagttgttgtctttaataaaaagtttctatttctaactttcttaa 8557698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 11083274 - 11083323
Alignment:
Q  215 tttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaac 266  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  11083274 tttataaaagtaaaaaa-ttattgtttttaata-aaaatttctatttttaac 11083323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 263
Target Start/End: Original strand, 34809154 - 34809251
Alignment:
Q  166 taatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctattttt 263  Q
    ||||||| ||| |||  ||| ||||||| |||||||| ||||||||   ||||| ||||| ||||| || |||||||||||| ||||  |||||||||    
T  34809154 taatatagaaactttgcattgagaaatggtgaaaagtagaatgtttaactttatgaaagtcaaaaaattgttgcttttaataaaaaaaatctattttt 34809251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 37509312 - 37509267
Alignment:
Q  187 agaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaag 232  Q
    |||||||||||||||| ||||||||| ||||| |||||| ||||||    
T  37509312 agaaatgatgaaaagtggaatgtttcattttagaaaagtcaaaaag 37509267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 192 - 274
Target Start/End: Original strand, 2660349 - 2660431
Alignment:
Q  192 tgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||||||||| ||| |||||  ||||||||||| |||||||| ||| |||||||||||||| ||||||||||||||| ||||    
T  2660349 tgatgaaaagtagaacgtttcactttataaaagttaaaaagttgttgtttttaatagaaaatatctatttttaacttttttaa 2660431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 31238355 - 31238440
Alignment:
Q  189 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||||||||||||  |||||| |  ||||||||||| |||||||| ||| ||||||| ||||| |||||||||||||||||||||    
T  31238355 aaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatggaaaaattctatttttaactttcttaa 31238440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 31247725 - 31247810
Alignment:
Q  189 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||||||||||||  |||||| |  ||||||||||| |||||||| ||| ||||||| ||||||||||||||| |||||||||||    
T  31247725 aaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgttgtttttaatggaaaatttctattttaaactttcttaa 31247810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 9062929 - 9062845
Alignment:
Q  195 tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 279  Q
    |||||||||||||||||   ||||| ||||  |||||||| ||| |||||||  ||| ||||||||||| || | ||||||||||    
T  9062929 tgaaaagttgaatgtttaactttatgaaagataaaaagttgttgtttttaatgaaaattttctatttttgacatccttaatcatt 9062845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 32566042 - 32565918
Alignment:
Q  150 aaatagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaataga 249  Q
    ||||||||||  ||| |||||||||||||||| |||   || ||||||||||| |||| ||    ||||||||||| ||||  |||||| ||||||| ||    
T  32566042 aaatagttaaggagactaatataaaaattttacattggaaagtgatgaaaagtggaatattcgagtttataaaagtcaaaagtttattgtttttaatgga 32565943  T
Q  250 aaatttctatttttaactttcttaa 274  Q
    || ||||||||||||||||||||||    
T  32565942 aattttctatttttaactttcttaa 32565918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 11777164 - 11777271
Alignment:
Q  163 gattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat-agaaaatttctattt 261  Q
    |||||||||| |||| ||  ||||  |||||| ||||||||||||||||| ||||||||||||||||||| | |||  |||||| | ||||||| |||||    
T  11777164 gattaatatagaaatcttgcattagaaaatgacgaaaagttgaatgtttcattttataaaagtaaaaaagatgttgtgtttaataaaaaaatttatattt 11777263  T
Q  262 ttaacttt 269  Q
    ||||||||    
T  11777264 ttaacttt 11777271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 52708570 - 52708486
Alignment:
Q  195 tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 279  Q
    |||||||||||||||||   ||||| ||||| |||||||| ||| |||||||| ||||||||| |||||||| | ||||| ||||    
T  52708570 tgaaaagttgaatgtttaactttatgaaagtcaaaaagttgttgtttttaataaaaaatttctctttttaacatccttaaccatt 52708486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 779775 - 779860
Alignment:
Q  195 tgaaaagttgaatgtttcgttttataaaagt-aaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 279  Q
    |||||||||||||||||   ||||| ||||| ||||||||| ||| |||||||  ||| ||||||||||| || ||||||||||||    
T  779775 tgaaaagttgaatgtttaactttatgaaagtcaaaaaagttgttgtttttaatgaaaattttctatttttgacattcttaatcatt 779860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Original strand, 10519582 - 10519667
Alignment:
Q  189 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||||| |||||| ||||||| |  |||| |||||| ||||||||||||  ||||||| ||||  ||||||| ||||||||||||    
T  10519582 aaatgattaaaagtggaatgttccactttagaaaagtcaaaaagttattgtctttaataaaaaaaatctatttctaactttcttaa 10519667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 43525649 - 43525698
Alignment:
Q  225 taaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    |||||||||||||| |||||||||||||||| || |||| ||||||||||    
T  43525649 taaaaaagttattgtttttaatagaaaatttttaattttgactttcttaa 43525698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 153 - 274
Target Start/End: Complemental strand, 53920311 - 53920190
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    |||||||  |||||||||| |||| |||| |||   |||| |||| |||| |||||||||  |||| |||||| |||||||| |||  ||||||  ||||    
T  53920311 tagttaaggagattaatatgaaaactttacattggaaaataatgagaagtggaatgtttcactttagaaaagtcaaaaagttgttgtctttaatgaaaaa 53920212  T
Q  253 tttctatttttaactttcttaa 274  Q
    ||| ||| ||||||||||||||    
T  53920211 tttatatatttaactttcttaa 53920190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 16467921 - 16467873
Alignment:
Q  198 aaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat 246  Q
    ||||||||||||||   ||||| |||||||||||||||||| |||||||    
T  16467921 aaagttgaatgtttaactttatgaaagtaaaaaagttattgtttttaat 16467873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 53599339 - 53599427
Alignment:
Q  164 attaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    ||||||||| ||||| || ||||  || ||||||||| |  |||||||   ||||| |||||||||||||||||| |||||||| ||||    
T  53599339 attaatatagaaattatacattagaaattgatgaaaaatgtaatgtttaactttatgaaagtaaaaaagttattgtttttaataaaaaa 53599427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 274
Target Start/End: Complemental strand, 4305442 - 4305325
Alignment:
Q  156 ttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaattt 255  Q
    ||||| |||||||||||||||||||| ||||  ||||||||||||||  ||||||    ||||| |||||||||||  | | | |||||||| |||| ||    
T  4305442 ttaaagagattaatataaaaattttacattagaaaatgatgaaaagtaaaatgttctactttatgaaagtaaaaaaaatgtcg-ttttaataaaaaaatt 4305344  T
Q  256 ctatttttaactttcttaa 274  Q
    |||||||||||||||||||    
T  4305343 ctatttttaactttcttaa 4305325  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 7671716 - 7671807
Alignment:
Q  182 tattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    |||||| |||| |||||||||  |||||| | ||||| |||||| |||||||| ||| |||||||| ||||| | ||||||||||||||||||    
T  7671716 tattaaaaaataatgaaaagtaaaatgttccattttaaaaaagtcaaaaagttgttgtttttaata-aaaatatttatttttaactttcttaa 7671807  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 32668185 - 32668106
Alignment:
Q  189 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactt 268  Q
    ||||||| |||||| ||||||||| |||||||||||| ||||| || ||| |||||||  ||| || |||||||||||||    
T  32668185 aaatgattaaaagtggaatgtttcattttataaaagtcaaaaatttgttgtttttaatgaaaacttcctatttttaactt 32668106  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 26040143 - 26040220
Alignment:
Q  188 gaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 265  Q
    ||||||||||||||| ||| ||||| |||||| |||||  ||||||| ||| ||| ||| || |||||||||||||||    
T  26040143 gaaatgatgaaaagtggaaagtttcattttatgaaagtcgaaaagttgttgttttgaatggagaatttctatttttaa 26040220  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 43623646 - 43623599
Alignment:
Q  155 gttaaatagattaatataaaaattttatattaagaaatgatgaaaagt 202  Q
    |||||| ||||||||||||||| |||| ||||| ||||||||||||||    
T  43623646 gttaaaaagattaatataaaaactttacattaaaaaatgatgaaaagt 43623599  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 33500180 - 33500081
Alignment:
Q  166 taatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 265  Q
    ||||||| ||||||| |||||  || ||||||||||| |||||||||   |||||||||| |||||||| | | |||||||||||| ||| || ||||||    
T  33500180 taatatagaaattttgtattagaaagtgatgaaaagtggaatgtttcaccttataaaagttaaaaagttgtcgtttttaatagaaattttttaattttaa 33500081  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 26296889 - 26296836
Alignment:
Q  222 aagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaat 275  Q
    |||| ||||||||||||  |||||| |||||||| |||||||||||||||||||    
T  26296889 aagtcaaaaagttattgtatttaattgaaaatttttatttttaactttcttaat 26296836  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 42491857 - 42491804
Alignment:
Q  221 aaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    ||||| |||||||| ||| |||||||| ||||||||| ||||||||||||||||    
T  42491857 aaagttaaaaagtttttgtttttaataaaaaatttctttttttaactttcttaa 42491804  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 252
Target Start/End: Original strand, 5963946 - 5964045
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaa 252  Q
    |||||||| ||||||||||||||||| |  ||| | || ||||||||||| |||| |||  |||||| ||||| ||||| |||||| || ||||| ||||    
T  5963946 tagttaaaaagattaatataaaaattatgcattgaaaattgatgaaaagtggaatatttaattttatgaaagttaaaaaattattgtttataataaaaaa 5964045  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 275
Target Start/End: Complemental strand, 8257348 - 8257222
Alignment:
Q  151 aatagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaat--ag 248  Q
    |||||||||  ||||||||||| ||| |||  |||  ||||||||||||| | ||||||| |  |||| |||||| |||||||| |||  ||||||  |     
T  8257348 aatagttaaggagattaatatagaaactttgcattgggaaatgatgaaaaatggaatgttccactttagaaaagtcaaaaagttgttgtctttaataaaa 8257249  T
Q  249 aaaatttctatttttaactttcttaat 275  Q
    ||||  |||||||||||||||||||||    
T  8257248 aaaaaatctatttttaactttcttaat 8257222  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 37807297 - 37807361
Alignment:
Q  215 tttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaatcatt 279  Q
    ||||| ||||| |||||| | ||| |||||||| |||||||||||||||||  | ||||||||||    
T  37807297 tttatgaaagtcaaaaaggtgttgtttttaataaaaaatttctatttttaatatccttaatcatt 37807361  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 265
Target Start/End: Complemental strand, 31211962 - 31211884
Alignment:
Q  187 agaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaa 265  Q
    |||||||||||||||| ||||||| |  || |||||||| |||||||| |||  ||||||| ||| |||||||||||||    
T  31211962 agaaatgatgaaaagtggaatgttccacttcataaaagtcaaaaagttgttgtctttaataaaaagtttctatttttaa 31211884  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 274
Target Start/End: Complemental strand, 41750732 - 41750647
Alignment:
Q  189 aaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatagaaaatttctatttttaactttcttaa 274  Q
    |||||||||||||| |||||||||  |||| |||||| ||||| ||||||  ||||||| |||| || ||||| || |||||||||    
T  41750732 aaatgatgaaaagtggaatgtttcactttagaaaagtcaaaaaattattgtctttaataaaaaaattatatttctagctttcttaa 41750647  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 266
Target Start/End: Original strand, 10701648 - 10701753
Alignment:
Q  162 agattaatataaaaattttatattaagaaatga-tgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaatag-aaaatttctat 259  Q
    ||||||||||| ||||| ||||||| ||||| | |||||||||||||||||   ||||||||||| ||||| |   || ||||||| | |||||||||||    
T  10701648 agattaatatagaaattatatatta-gaaattagtgaaaagttgaatgtttaagtttataaaagtcaaaaaatcgatgtttttaatggaaaaatttctat 10701746  T
Q  260 ttttaac 266  Q
    |||||||    
T  10701747 ttttaac 10701753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 247
Target Start/End: Complemental strand, 41750562 - 41750468
Alignment:
Q  153 tagttaaatagattaatataaaaattttatattaagaaatgatgaaaagttgaatgtttcgttttataaaagtaaaaaagttattgcttttaata 247  Q
    |||||||  |||||||||  |||| |||  |||||||||||||||||||| || |||| |  | ||||||||| |||||||| ||| ||||||||    
T  41750562 tagttaaggagattaataagaaaactttgcattaagaaatgatgaaaagtggagtgttccactgtataaaagtcaaaaagttgttgtttttaata 41750468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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