View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_2 (Length: 663)
Name: NF17523_low_2
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_2 |
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| [»] scaffold0219 (4 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 497; Significance: 0; HSPs: 4)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 18 - 550
Target Start/End: Complemental strand, 14098 - 13566
Alignment:
| Q |
18 |
gtataaacaaaaattccgttttcaaattcactgaataattaatatatttgatgacatttgcagaggacgagactcagtttaattacgatgaagcaagtcc |
117 |
Q |
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| T |
14098 |
gtataaacaaaaattccgtttttaaatttactgaataattaatatatttgatgacatttgcagaggacgagactgagtttaattacgatgaagcaagtcc |
13999 |
T |
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| Q |
118 |
gctaggaccaccgaattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccagttgatttgagagatgatgtggtt |
217 |
Q |
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| T |
13998 |
gctaggaccaccgaattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccaattgatttgagagatgaggtggtt |
13899 |
T |
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| Q |
218 |
caaatatcaaatttaggaccacttcagatcaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataacaaatat |
317 |
Q |
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| T |
13898 |
caaatatcaaatttaggaccacttcagaccaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataacaaatat |
13799 |
T |
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| Q |
318 |
catactataaatgaattgttaaacaacttataagaaaacaactttttatacaaataattttctgaatcattttttctatgaataggttgaattgatgtcg |
417 |
Q |
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| T |
13798 |
cttactataaatgaattgttaaacaacttataagaaaacaactttttatacaaataattttctgaatcattttttctatgaataggttgaattgatgtcg |
13699 |
T |
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| Q |
418 |
aactcaagctatctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacacaccattaatggtgtaaggtacatac |
517 |
Q |
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| T |
13698 |
aactcaagctatctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacacaccatcaatggtgtaaggtacatac |
13599 |
T |
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| Q |
518 |
ttattgtatacccttaattcatgataattatat |
550 |
Q |
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| T |
13598 |
ttactgtatacccttaattcatgataattatat |
13566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 131 - 310
Target Start/End: Complemental strand, 25252 - 25073
Alignment:
| Q |
131 |
aattggggacacattaaacccaacgaatggtttttgtgcaaaaatggaacaatgcaatctccagttgatttgagagatgatgtggttcaaata---tcaa |
227 |
Q |
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| T |
25252 |
aattggggagacattaaaccc---gaatggtttaggtgcaaaaatggaacaatgcaatcgccaattgatttgttgaatcatagggttcaaattgtgtcca |
25156 |
T |
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| Q |
228 |
atttaggaccacttcagatcaactacaatccctctaatgcaactcttaaaaacaggggtcatgatgtcaaggtaagttaataa |
310 |
Q |
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| T |
25155 |
atttaggaggacttcagatcaactacactccctctaatgcaactcttaaaaataggggtcatgatatcaaggttagtttataa |
25073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 519
Target Start/End: Complemental strand, 24987 - 24862
Alignment:
| Q |
394 |
tatgaataggttgaattgatgtcgaactcaagctatctacaaattgatggaacacagtatgaacttctacagttccattggcatactccatctgaacaca |
493 |
Q |
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| T |
24987 |
tatgaatagctggaattgattgcaaactcaagctatctacaaattaatggaactcagtatgtacttaaacagttacattggcattctccctctgaacaca |
24888 |
T |
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| Q |
494 |
ccattaatggtgtaaggtacatactt |
519 |
Q |
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| T |
24887 |
ccatagatggcaaaaggtacatactt |
24862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0219; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 592 - 653
Target Start/End: Complemental strand, 13514 - 13453
Alignment:
| Q |
592 |
tttgctgttggaaaatttgggcttcatgactttcttataagaaaattgttcttctacctttg |
653 |
Q |
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| T |
13514 |
tttgttgttagaaaatttgggcttcatgactttcttataagaaaattgttcttctacttttg |
13453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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