View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_23 (Length: 320)
Name: NF17523_low_23
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 305
Target Start/End: Complemental strand, 43411247 - 43410917
Alignment:
| Q |
5 |
gagtgagatgaacaaaatagtttatgtaatcacgaagactacatg-----------tttggtatgatgctttgttaactaaaactctaattaaacaatat |
93 |
Q |
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| T |
43411247 |
gagtgagatgaacaaaatagtttatgtaatcacaaagactacatgagaagtaacagtttggtatgatgctttgttaactaaaactctaattaaacaacaa |
43411148 |
T |
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| Q |
94 |
gatgtgtaattaacaaaataaagccgcagaatctaacttaacgagtaattaaatgaaaagcagtaaaggtatatgagctaacattgatgttatgtttgct |
193 |
Q |
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| T |
43411147 |
gatgtgtaattaacaaaataaagccgcagaatctaacttaacgagtaattaaatgaaaagcagtaaaggtatatgagctaacattgatgttatgtttgct |
43411048 |
T |
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| Q |
194 |
tgggaatttggatgctatacaatatacagaca------------gacacaacacattcagatg---agaagttgta----agctagctaggaggatggac |
274 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
43411047 |
tgggaatttggatgctatacaatatacagacagacagacagacagacacaacacattcagatgatcagaagttgtaagctagctagctaggaggatggac |
43410948 |
T |
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| Q |
275 |
tgctgctgctgctgttgcggaaagtgtttgg |
305 |
Q |
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| T |
43410947 |
tgctgctgctgctgttgcggaaagtgtttgg |
43410917 |
T |
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