View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_26 (Length: 297)
Name: NF17523_low_26
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 5107472 - 5107191
Alignment:
| Q |
1 |
aatcgttcaaccaagattaactaattttcatcaaatgcattcagatgaagtagactaaataaataataaatggtattatgctgcttaatatctgcctgta |
100 |
Q |
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| T |
5107472 |
aatcgtttaaccaagattaactaattttcatcaaatgcattcagatgaagtagactaaataaataataaatggtattatgctgcttaatatctggctgta |
5107373 |
T |
|
| Q |
101 |
ttgaaaactataatagtgaaagttattgaataatgatgtataaatcataacaaacaaaaataaaaattctgaagccaataaatcaatagaaattcatatc |
200 |
Q |
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| T |
5107372 |
ttgaaaactataatagtgaaagttactgagtaatgatgtataaatcataacaaacaaaaataaaaattctgaagccaataaatcaatagtaattcatatc |
5107273 |
T |
|
| Q |
201 |
taaagagaagcaaagctgggtagcttcattac--nnnnnnnntgattcagtttgaacgcataaaaataaggaatgtgatttc |
280 |
Q |
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| T |
5107272 |
taaagagaagcaaagctgggtagcttcattacaaaaaaaaaatgattcagtttgaacgcataaaaataaggaatgtgatttc |
5107191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 5094229 - 5094110
Alignment:
| Q |
62 |
aataataaatggtattatgctgcttaatatctgcctgtattgaaaactataa-tagtgaaagttattgaataatgatgtataaatcataacaaacaaaaa |
160 |
Q |
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|||||||||||| ||||||||||| |||||||| |||||||||||||||||| | | |||||||||||||| ||||| | ||| |||||||| ||||| |
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| T |
5094229 |
aataataaatggaattatgctgctaaatatctggctgtattgaaaactataactgttaaaagttattgaatattgatgaagaaaccataacaaccaaaac |
5094130 |
T |
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| Q |
161 |
taaaaattctgaagccaata |
180 |
Q |
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| T |
5094129 |
tcaaaatgttgaagccaata |
5094110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 2471140 - 2471214
Alignment:
| Q |
56 |
taaataaataataaatggtattatgctgcttaatatctgcctgtattgaaaactataatagtgaaagttattgaat |
131 |
Q |
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| T |
2471140 |
taaataaataataaatga-attatgctgcctaatgtctggctgtattgaaaactatgatagtgaaagttattgaat |
2471214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 5103261 - 5103158
Alignment:
| Q |
55 |
ctaaataaataataaatggtattatgctgcttaatatctgcctgtattgaaaactataatagtgaaagttattgaataatgatgtataaatcataacaaa |
154 |
Q |
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| T |
5103261 |
ctaaagaaataataaatggtattatgctgcttaatgtctggctgtattaaaaaatgtaattgtgaaagttactggatattgatgaagaaa-cctaacaaa |
5103163 |
T |
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| Q |
155 |
caaaa |
159 |
Q |
| |
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||||| |
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| T |
5103162 |
caaaa |
5103158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 2466533 - 2466631
Alignment:
| Q |
60 |
taaataataaatggtattatgc---tgcttaatatctgcctgtattgaaaactataatagtgaaagttattgaataatgatgtataaatcataacaaac |
155 |
Q |
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||||||||||||||||| |||| ||||||||||||| | ||| |||||||||||| |||||||||||||| || ||||| | ||||||| |||||| |
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| T |
2466533 |
taaataataaatggtataatgccgctgcttaatatctggttttatggaaaactataattgtgaaagttattgagtattgatgaaaaaatcattacaaac |
2466631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 2459655 - 2459728
Alignment:
| Q |
86 |
taatatctgcctgtattgaaaactataatagtgaaagttattgaataatgatgtataaatcataacaaacaaaa |
159 |
Q |
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| T |
2459655 |
taatgtctggctttattgaaaactataattgtgaaagttattaaatattgatgaagaaaccataacaaacaaaa |
2459728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 2369196 - 2369115
Alignment:
| Q |
104 |
aaaactataatagtgaaagttattgaataatgatgtataaatcataacaaacaaaaataaaaattctgaagccaataaatca |
185 |
Q |
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|||||| |||| ||||||||||||||| ||||||| | ||| ||| |||||||| | | |||| || ||||||||||||||| |
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| T |
2369196 |
aaaactgtaattgtgaaagttattgaacaatgatgaagaaaccattacaaacaatactcaaaagtcagaagccaataaatca |
2369115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5094393 - 5094343
Alignment:
| Q |
1 |
aatcgttcaaccaagattaactaattttcatcaaatgcattcagatgaagt |
51 |
Q |
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||||||| |||||| || || |||| ||||||||||||||||||||||||| |
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| T |
5094393 |
aatcgtttaaccaaaataaattaatcttcatcaaatgcattcagatgaagt |
5094343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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