View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_30 (Length: 287)
Name: NF17523_low_30
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_30 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 49389524 - 49389238
Alignment:
| Q |
1 |
ttttgagatgtattttttgtgtggggatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
100 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49389524 |
ttttgagatgtattttttgtatgggcatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
49389425 |
T |
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| Q |
101 |
aataatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49389424 |
aataatcttctgaggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
49389325 |
T |
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| Q |
201 |
gatacctatatgtgtatgagtaaaacaagtgtcatattgttgcttagaaataatctaagtaggcttgaatataattttttggcactt |
287 |
Q |
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| T |
49389324 |
gatacctatatgtgtatgagtaaaacaagtgtgatattgtcgcttagaaataatctaagtagacttgaatataattttgtggcactt |
49389238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 24043571 - 24043285
Alignment:
| Q |
1 |
ttttgagatgtattttttgtgtggggatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24043571 |
ttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
24043472 |
T |
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| Q |
101 |
aataatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
200 |
Q |
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| T |
24043471 |
aatgatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
24043372 |
T |
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| Q |
201 |
gatacctatatgtgtatgagtaaaacaagtgtcatattgttgcttagaaataatctaagtaggcttgaatataattttttggcactt |
287 |
Q |
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| T |
24043371 |
gatacctatatgtgtatgagtaaaacaagtgtgatattgtcgcttagaaataatctaagtagatctgaatataattttgtggcactt |
24043285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 10940042 - 10939756
Alignment:
| Q |
1 |
ttttgagatgtattttttgtgtggggatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10940042 |
ttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
10939943 |
T |
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| Q |
101 |
aataatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10939942 |
aatgatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
10939843 |
T |
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| Q |
201 |
gatacctatatgtgtatgagtaaaacaagtgtcatattgttgcttagaaataatctaagtaggcttgaatataattttttggcactt |
287 |
Q |
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| T |
10939842 |
gatacctatatgtgtatgagtaaaacaagtgtgatattgtcgcttagaaataatctaagtagatctgaatataattttgtggcactt |
10939756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 10945911 - 10945625
Alignment:
| Q |
1 |
ttttgagatgtattttttgtgtggggatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10945911 |
ttttgagatgtattttttgtgtgggcatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataa |
10945812 |
T |
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| Q |
101 |
aataatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
200 |
Q |
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||| ||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10945811 |
aattatcttttgtggtctatttggatccttactatgacattcattttaaaaggagatggaagtgtactccgtaacaagatgttattaagaaatccactgt |
10945712 |
T |
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| Q |
201 |
gatacctatatgtgtatgagtaaaacaagtgtcatattgttgcttagaaataatctaagtaggcttgaatataattttttggcactt |
287 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| | ||||||||||||| |||||||| |
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| T |
10945711 |
gatacctatatgtgtatgagtaaaacaagtgtgatattgtcgcttagaaataatctaagtagacctgaatataattttgtggcactt |
10945625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 71 - 287
Target Start/End: Original strand, 13817306 - 13817522
Alignment:
| Q |
71 |
agcattgttcttttaagattattaaaataaaataatcttctggggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactcc |
170 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13817306 |
agcattgttcttttaagattattaaaataaaatgatcttctggggtctatttggatccttactatgacattcattttaaaaagtgatggaagtgtactcc |
13817405 |
T |
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| Q |
171 |
gtaacaagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtcatattgttgcttagaaataatctaagtaggcttgaat |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||| |
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| T |
13817406 |
gtaacaagatgttattaagaaatccactgtgatacctatatgtgtatgagtaaaacaagtgtgatattgccgcttagaaataatctaagtagatctgaat |
13817505 |
T |
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| Q |
271 |
ataattttttggcactt |
287 |
Q |
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|||||||| |||||||| |
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| T |
13817506 |
ataattttgtggcactt |
13817522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13817269 - 13817308
Alignment:
| Q |
1 |
ttttgagatgtattttttgtgtggggatgcaattttgagc |
40 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |
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| T |
13817269 |
ttttgagatgtattttttgtgtgggcatgcaattttgagc |
13817308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 14656157 - 14656403
Alignment:
| Q |
14 |
tttttgtgtggggatgcaattttgagcttgcttctcgatcgatctaacattcgttgcagcattgttcttttaagattattaaaataaaa-taatcttctg |
112 |
Q |
| |
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||||||||||| || |||||||||||| ||||| || |||||||||| ||||| ||||||| |||||||||||||||||||||| | ||||||| |
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| T |
14656157 |
tttttgtgtggacatacaattttgagctatcttcttgacggatctaacatgtcttgcaacattgtttttttaagattattaaaataaaaatgatcttcta |
14656256 |
T |
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| Q |
113 |
gggtctatttggatccttactatgacattcattttaaaaagagatggaagtgtactccgtaac-aagatgttattaagaaatccactgtgatacctatat |
211 |
Q |
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|| ||||||| ||||||||||||||||||| |||| ||||||||||| || ||||| |||||||||| ||||||||||| | |||| |||| |
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| T |
14656257 |
ggatctattt--------actatgacattcattttaataagaaatggaagtgtattcagtaacaaagatgttatgaagaaatccacgatcatac--atat |
14656346 |
T |
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| Q |
212 |
gtgtatgagtaaaacaagtgt------catattgttgcttagaaataatctaagtag |
262 |
Q |
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|||||| |||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
14656347 |
atgtatgtataaaacaagtgtgatagacatgttgtcgcttagaaataatctaagtag |
14656403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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