View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_34 (Length: 258)
Name: NF17523_low_34
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 40430049 - 40429820
Alignment:
| Q |
17 |
atcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacctaaacctgatttcaaccgaatcctcttcagccatttttaac |
116 |
Q |
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| T |
40430049 |
atcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacctaaacctgatttcaaccgaatcctcttcagccatttttaac |
40429950 |
T |
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| Q |
117 |
tcactttgnnnnnnnnnnnnnnnnctctcccctactcaaaccctaataatccttgttggaaaatgattatataattttacagttcaatcacatatacgcg |
216 |
Q |
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| T |
40429949 |
tcactttgttttttttttttt---ctctcccctactcaaaccctaataatccttgttggaaaatgattatataattttacagttcaatcacatatacgcg |
40429853 |
T |
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| Q |
217 |
caaaatcaaagatacgtagtttcctagaataat |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40429852 |
caaaatcaaagatacgtagtttcctagaataat |
40429820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 40424506 - 40424420
Alignment:
| Q |
17 |
atcaacagtggcagcagaagaatacttaaacggtccaatatcagaaccattgtttaacctaaacctgatttcaaccgaatcctcttc |
103 |
Q |
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||||||||| |||||||| |||||| |||||||||||||||||||||||| || |||||||||| |||| |||||| |||| ||||| |
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| T |
40424506 |
atcaacagtagcagcagatgaatacctaaacggtccaatatcagaaccatcgtataacctaaacttgatatcaaccaaatcttcttc |
40424420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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