View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_35 (Length: 255)
Name: NF17523_low_35
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_35 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 164 - 255
Target Start/End: Original strand, 31606901 - 31606992
Alignment:
| Q |
164 |
attaaacttctgattaatgttgatgaatggcaggttggtccaagaacttcaaatgatagacaaaattttccaccaaataacataattcacat |
255 |
Q |
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| T |
31606901 |
attaaacttctgattaatgttgatgaatggcaggttggtccaagaacttcaaatgatagacaaaattttccaccaaataacataattcacat |
31606992 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 31606813 - 31606867
Alignment:
| Q |
15 |
ttatactaaaattatggtttatttcaaaactttacaaattcaagtaaaattttgc |
69 |
Q |
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| T |
31606813 |
ttatactaaaattatggtttatttcaaaactttacaagctcaagtaaaattttgc |
31606867 |
T |
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