View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_37 (Length: 250)
Name: NF17523_low_37
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 16365332 - 16365400
Alignment:
| Q |
170 |
caattatagtgctatgattggagcagctgatacataattatgaataggtgtacagtcccaccctacttc |
238 |
Q |
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| T |
16365332 |
caattatagtgctatgattggagcagctgatacataattatgaataggtgtacagtcccaccctacttc |
16365400 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 16365205 - 16365247
Alignment:
| Q |
44 |
ctctttctgtttttcacaataagttaatttaacataaaaatta |
86 |
Q |
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| T |
16365205 |
ctctttctgttcttcacaataagttaatttaacataaaaatta |
16365247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 16364937 - 16364967
Alignment:
| Q |
1 |
ctagattaaaaaaagttgttgtactttgaag |
31 |
Q |
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| T |
16364937 |
ctagattaaaaaaagttgttgtactttgaag |
16364967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Original strand, 16364983 - 16365025
Alignment:
| Q |
44 |
ctctttctgtttttcacaataagttaatttaacataaaaatta |
86 |
Q |
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| T |
16364983 |
ctctttctattcttcacaataagtgaatttaacataaaaatta |
16365025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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