View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_low_4 (Length: 535)

Name: NF17523_low_4
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_low_4
NF17523_low_4
[»] chr3 (41 HSPs)
chr3 (1-516)||(42881281-42881796)
chr3 (300-449)||(2150628-2150777)
chr3 (347-479)||(19873073-19873204)
chr3 (347-511)||(48080010-48080173)
chr3 (347-462)||(50508868-50508983)
chr3 (347-411)||(11671784-11671848)
chr3 (205-296)||(30762032-30762123)
chr3 (297-462)||(35688298-35688465)
chr3 (369-440)||(51055477-51055548)
chr3 (315-440)||(48583747-48583873)
chr3 (347-431)||(5041050-5041134)
chr3 (350-479)||(25467466-25467598)
chr3 (350-407)||(33558789-33558846)
chr3 (315-456)||(54444359-54444501)
chr3 (318-407)||(35203302-35203391)
chr3 (395-483)||(49374769-49374856)
chr3 (347-462)||(12905611-12905726)
chr3 (315-439)||(8340160-8340286)
chr3 (347-409)||(40563992-40564054)
chr3 (297-479)||(19454765-19454949)
chr3 (350-462)||(42096741-42096854)
chr3 (358-433)||(7940356-7940431)
chr3 (315-407)||(14418284-14418376)
chr3 (346-413)||(22845125-22845191)
chr3 (314-406)||(33099698-33099790)
chr3 (347-389)||(23298324-23298366)
chr3 (297-411)||(30248000-30248115)
chr3 (350-479)||(45079204-45079333)
chr3 (350-411)||(26787597-26787657)
chr3 (346-438)||(46819180-46819272)
chr3 (355-422)||(24987411-24987478)
chr3 (346-401)||(25630313-25630368)
chr3 (350-440)||(27064210-27064301)
chr3 (395-462)||(30964594-30964661)
chr3 (395-462)||(30980406-30980473)
chr3 (297-440)||(41410203-41410347)
chr3 (301-411)||(2013004-2013115)
chr3 (355-440)||(6408592-6408678)
chr3 (355-433)||(19618710-19618788)
chr3 (347-397)||(39952573-39952623)
chr3 (350-407)||(50622256-50622315)
[»] chr5 (27 HSPs)
chr5 (347-479)||(41983233-41983364)
chr5 (353-462)||(22632242-22632351)
chr5 (350-479)||(7978016-7978144)
chr5 (347-479)||(29455776-29455907)
chr5 (350-484)||(16620307-16620441)
chr5 (315-411)||(24489032-24489128)
chr5 (299-484)||(16186748-16186933)
chr5 (347-407)||(6224837-6224897)
chr5 (347-411)||(18595413-18595477)
chr5 (347-411)||(31149686-31149750)
chr5 (315-462)||(4901901-4902047)
chr5 (297-479)||(639302-639484)
chr5 (350-411)||(14087715-14087776)
chr5 (293-409)||(23141560-23141677)
chr5 (346-462)||(36470441-36470557)
chr5 (355-440)||(4572291-4572376)
chr5 (297-462)||(19254428-19254594)
chr5 (297-465)||(38309774-38309943)
chr5 (299-412)||(5657662-5657777)
chr5 (319-440)||(15673941-15674064)
chr5 (350-440)||(34718777-34718868)
chr5 (297-409)||(36323077-36323188)
chr5 (350-440)||(41692461-41692552)
chr5 (355-433)||(14088298-14088376)
chr5 (395-462)||(32302390-32302457)
chr5 (319-440)||(33347037-33347160)
chr5 (350-462)||(35853523-35853636)
[»] chr7 (34 HSPs)
chr7 (297-506)||(2959899-2960108)
chr7 (347-511)||(43702406-43702569)
chr7 (297-479)||(44300704-44300886)
chr7 (350-462)||(43224325-43224437)
chr7 (350-462)||(36074118-36074231)
chr7 (355-504)||(5924068-5924218)
chr7 (313-483)||(38469876-38470046)
chr7 (347-407)||(9477708-9477768)
chr7 (346-433)||(3551524-3551611)
chr7 (297-440)||(28067212-28067356)
chr7 (298-440)||(30391577-30391720)
chr7 (297-462)||(1875982-1876150)
chr7 (356-440)||(30738635-30738719)
chr7 (298-462)||(40789473-40789638)
chr7 (315-440)||(45112223-45112350)
chr7 (316-411)||(16278487-16278582)
chr7 (350-448)||(38398427-38398525)
chr7 (297-479)||(40342257-40342439)
chr7 (355-440)||(19805067-19805152)
chr7 (350-411)||(42284563-42284624)
chr7 (350-422)||(38400969-38401041)
chr7 (315-479)||(48558643-48558807)
chr7 (350-440)||(17172213-17172304)
chr7 (319-479)||(36072596-36072757)
chr7 (315-462)||(11244031-11244180)
chr7 (348-428)||(25309506-25309586)
chr7 (347-407)||(33067473-33067533)
chr7 (355-401)||(43218675-43218721)
chr7 (202-291)||(18319880-18319969)
chr7 (355-407)||(21153261-21153314)
chr7 (355-411)||(16567625-16567681)
chr7 (355-411)||(16597981-16598037)
chr7 (348-384)||(27039750-27039786)
chr7 (355-411)||(46181271-46181327)
[»] chr1 (43 HSPs)
chr1 (298-440)||(610732-610874)
chr1 (347-483)||(945460-945595)
chr1 (315-440)||(29512173-29512298)
chr1 (348-465)||(32835504-32835621)
chr1 (298-479)||(19996619-19996799)
chr1 (298-479)||(7842550-7842730)
chr1 (347-483)||(25059081-25059216)
chr1 (350-465)||(31873297-31873412)
chr1 (297-440)||(20414990-20415134)
chr1 (316-465)||(48985127-48985278)
chr1 (314-483)||(9472928-9473098)
chr1 (348-462)||(10786217-10786331)
chr1 (313-440)||(31107606-31107734)
chr1 (346-462)||(973509-973625)
chr1 (347-479)||(19506367-19506498)
chr1 (356-479)||(28220952-28221074)
chr1 (315-462)||(2465514-2465661)
chr1 (315-499)||(35949559-35949744)
chr1 (293-440)||(48662679-48662828)
chr1 (346-422)||(424611-424687)
chr1 (318-479)||(31646262-31646422)
chr1 (355-407)||(38491461-38491513)
chr1 (355-410)||(2975245-2975300)
chr1 (355-410)||(2978471-2978526)
chr1 (355-410)||(34321000-34321057)
chr1 (315-381)||(13797032-13797098)
chr1 (350-462)||(30489666-30489779)
chr1 (355-440)||(44327930-44328015)
chr1 (315-438)||(48796561-48796686)
chr1 (350-440)||(4893287-4893378)
chr1 (350-440)||(29185109-29185200)
chr1 (318-513)||(29426274-29426471)
chr1 (297-403)||(16177013-16177120)
chr1 (350-462)||(35659548-35659661)
chr1 (350-407)||(21260743-21260800)
chr1 (313-383)||(30622958-30623028)
chr1 (350-413)||(3821270-3821334)
chr1 (350-441)||(50099834-50099926)
chr1 (346-446)||(236381-236483)
chr1 (355-440)||(29054605-29054691)
chr1 (347-384)||(40044995-40045032)
chr1 (355-411)||(9222294-9222350)
chr1 (355-407)||(12560616-12560668)
[»] chr4 (41 HSPs)
chr4 (314-484)||(8614535-8614704)
chr4 (297-511)||(22829700-22829914)
chr4 (355-483)||(1731044-1731171)
chr4 (350-462)||(22313343-22313455)
chr4 (347-479)||(34459616-34459747)
chr4 (297-433)||(51806865-51807002)
chr4 (350-484)||(14595289-14595423)
chr4 (313-402)||(7117885-7117973)
chr4 (299-479)||(29405809-29405989)
chr4 (350-462)||(33983147-33983259)
chr4 (301-462)||(8644170-8644331)
chr4 (347-409)||(28928608-28928670)
chr4 (318-462)||(31713589-31713735)
chr4 (361-462)||(33733387-33733489)
chr4 (355-440)||(3387209-3387294)
chr4 (355-439)||(2224950-2225034)
chr4 (297-511)||(22247822-22248037)
chr4 (297-402)||(44808532-44808637)
chr4 (316-411)||(50981907-50982004)
chr4 (352-411)||(25938426-25938485)
chr4 (350-440)||(52802252-52802343)
chr4 (350-440)||(53140643-53140734)
chr4 (350-407)||(21297273-21297331)
chr4 (392-462)||(29994330-29994400)
chr4 (350-481)||(56445149-56445281)
chr4 (315-432)||(7262052-7262170)
chr4 (355-465)||(39485126-39485238)
chr4 (355-454)||(41003338-41003440)
chr4 (314-440)||(45097594-45097722)
chr4 (346-422)||(46030305-46030381)
chr4 (348-407)||(5798309-5798368)
chr4 (360-407)||(7250519-7250566)
chr4 (355-413)||(21245899-21245956)
chr4 (392-462)||(31786424-31786494)
chr4 (355-433)||(42755380-42755458)
chr4 (347-404)||(2073611-2073668)
chr4 (374-479)||(11034690-11034794)
chr4 (355-440)||(52595577-52595662)
chr4 (392-440)||(21075862-21075910)
chr4 (355-411)||(29149009-29149065)
chr4 (355-411)||(54979139-54979195)
[»] chr2 (23 HSPs)
chr2 (347-483)||(667963-668098)
chr2 (315-411)||(29155364-29155460)
chr2 (317-465)||(16711305-16711453)
chr2 (297-436)||(39767073-39767212)
chr2 (355-411)||(4592194-4592250)
chr2 (293-410)||(12757815-12757932)
chr2 (355-462)||(20937043-20937149)
chr2 (297-479)||(2656779-2656961)
chr2 (315-461)||(8753843-8753989)
chr2 (355-433)||(31440636-31440714)
chr2 (347-380)||(15150219-15150252)
chr2 (298-440)||(15234329-15234473)
chr2 (352-512)||(30241377-30241536)
chr2 (350-440)||(4289659-4289750)
chr2 (355-422)||(13142572-13142639)
chr2 (297-440)||(29546035-29546181)
chr2 (318-479)||(41935486-41935648)
chr2 (348-398)||(17154140-17154190)
chr2 (354-423)||(40507630-40507700)
chr2 (346-399)||(38958672-38958725)
chr2 (355-411)||(32422741-32422797)
chr2 (395-479)||(35048604-35048687)
chr2 (355-411)||(38620440-38620496)
[»] chr8 (23 HSPs)
chr8 (297-479)||(20216192-20216374)
chr8 (297-479)||(20235790-20235972)
chr8 (347-440)||(6109645-6109738)
chr8 (297-479)||(859487-859669)
chr8 (348-454)||(25500155-25500261)
chr8 (355-440)||(2620961-2621046)
chr8 (297-479)||(221968-222151)
chr8 (297-479)||(691123-691306)
chr8 (297-479)||(735591-735774)
chr8 (347-411)||(19643506-19643570)
chr8 (293-410)||(43239235-43239352)
chr8 (348-411)||(24891411-24891474)
chr8 (298-411)||(26561173-26561284)
chr8 (315-411)||(43511244-43511340)
chr8 (316-462)||(7580058-7580203)
chr8 (355-440)||(2472281-2472366)
chr8 (355-447)||(15961671-15961764)
chr8 (315-462)||(38020049-38020198)
chr8 (297-499)||(15542100-15542302)
chr8 (348-411)||(25419319-25419382)
chr8 (349-430)||(45553100-45553181)
chr8 (355-462)||(37226772-37226880)
chr8 (358-440)||(30801271-30801352)
[»] scaffold0011 (1 HSPs)
scaffold0011 (314-465)||(250156-250309)
[»] chr6 (9 HSPs)
chr6 (347-410)||(12429483-12429546)
chr6 (350-511)||(6938004-6938161)
chr6 (346-462)||(28769886-28770002)
chr6 (350-440)||(24447114-24447205)
chr6 (315-479)||(6337889-6338054)
chr6 (350-440)||(1221703-1221794)
chr6 (355-440)||(20691583-20691669)
chr6 (355-440)||(31070826-31070910)
chr6 (374-454)||(10499183-10499263)
[»] scaffold0323 (1 HSPs)
scaffold0323 (205-296)||(10987-11078)
[»] scaffold0005 (1 HSPs)
scaffold0005 (350-484)||(221955-222089)
[»] scaffold0602 (1 HSPs)
scaffold0602 (301-462)||(5009-5170)
[»] scaffold0312 (1 HSPs)
scaffold0312 (346-422)||(5862-5938)
[»] scaffold0249 (1 HSPs)
scaffold0249 (315-462)||(20034-20182)
[»] scaffold0056 (1 HSPs)
scaffold0056 (350-408)||(72589-72646)
[»] scaffold0242 (2 HSPs)
scaffold0242 (297-407)||(13026-13137)
scaffold0242 (297-407)||(21861-21972)
[»] scaffold0160 (1 HSPs)
scaffold0160 (297-440)||(26066-26211)
[»] scaffold0938 (1 HSPs)
scaffold0938 (297-369)||(561-633)
[»] scaffold0062 (2 HSPs)
scaffold0062 (297-369)||(23819-23891)
scaffold0062 (297-369)||(33987-34059)
[»] scaffold0102 (1 HSPs)
scaffold0102 (351-410)||(16503-16563)


Alignment Details
Target: chr3 (Bit Score: 432; Significance: 0; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 42881796 - 42881281
Alignment:
Q  1 caccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaacagcagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42881796 caccagtagcagctgaacagaacagcaactctgctatcatgacagcagccactacccaaagcgcctagcagcaaacagacctgcaagacacaacagcagc 42881697  T
Q  101 aacagcaagaacccaggaaaggctcatacgctgacaaaacaccacagcaccactgca-cagctgcaaaaacacccctaaagcacactgttcagccgcaaa 199  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  42881696 aacagcaaaaacccagaaaaggctcacacgctgacaaaacaccacagcaccaatgcagcagctgcaaaaacacccctaaagcacactgttcagccgcaaa 42881597  T
Q  200 tcacaccaaggcaccactttggattccacctccactcgtagaacaaacaaggttgaattttcagcctagctaaactccaactccacgacaaccttttgct 299  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42881596 tcacaccaaggcaccacttcggattccacctccactcgtagaacaaacaaggtagaattttcagcctagctaaactccaactccacgacaaccttttgct 42881497  T
Q  300 aaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaag 399  Q
    |||||| ||||||||||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42881496 aaatactacgatgtgtactattttatgagttgatttgaattttttt-gaccatagttttatttcaattgtgatgtttttattgtccttttacagttaaag 42881398  T
Q  400 tgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattattttttacaaa 499  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  42881397 tacgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaagtttgttgcccacgaggatacaattattttttacaaa 42881298  T
Q  500 tgcgggtgtgggatagg 516  Q
    | |||||||||||||||    
T  42881297 tacgggtgtgggatagg 42881281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 449
Target Start/End: Original strand, 2150628 - 2150777
Alignment:
Q  300 aaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaag 399  Q
    |||||| |||||  |||||||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||| ||| | | ||||||    
T  2150628 aaatactacgattcgtactattttatgagttgatttgaaaatatttagaccatagttttatttcaattgtgatgtttttattgtcttttcataattaaag 2150727  T
Q  400 tgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    |||| ||||||| | | | ||||  | |||||||||||||||| ||||||    
T  2150728 tgcgagtaatgggtacggctatgggcccttaggtgcccataaagtatggg 2150777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 479
Target Start/End: Complemental strand, 19873204 - 19873073
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||| | | ||||||  ||||||||| |||||||| |||    
T  19873204 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcaggtaatgggtgcgggtatgggcacttaggtacccataaagtat 19873105  T
Q  447 gggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||| | || |||| ||| ||||||| |||||||    
T  19873104 ggggaggggcact-aaagttgttgcccacgagg 19873073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 511
Target Start/End: Complemental strand, 48080173 - 48080010
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||  | | ||||||  ||||||||| ||||||  ||||    
T  48080173 gaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcgggtaatgagtgcgggtatggacacttaggtacccataggatat 48080074  T
Q  447 gggaaaggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgggtgtggg 511  Q
    ||| |||| |||| ||| ||||||| ||||||| |||   || |||||||||||| |||| ||||    
T  48080073 ggggaagggcact-aaagttgttgcccacgagggtacggataatttttacaaatgtgggtatggg 48080010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 347 - 462
Target Start/End: Original strand, 50508868 - 50508983
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| ||| | ||||||||  |||||| || ||||||   |||    
T  50508868 gaccataattttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtagtgggtgcaggtatgggcacttaagttcccatagggtat 50508967  T
Q  447 gggaaaggacactaaa 462  Q
    | |||||| |||||||    
T  50508968 gagaaagggcactaaa 50508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 11671848 - 11671784
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  11671848 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatgg 11671784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 30762032 - 30762123
Alignment:
Q  205 ccaaggcaccactttggattccacctccactcgtagaacaaacaaggttgaattttcagcctagctaaactccaactccacgacaacctttt 296  Q
    ||||||||||||||  |||||||||  || || ||||||||||| ||||||||||||||||| | |||||||||| ||||||| ||||||||    
T  30762032 ccaaggcaccacttcagattccaccgtcattcatagaacaaacacggttgaattttcagcctcgataaactccaaatccacgataacctttt 30762123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 462
Target Start/End: Complemental strand, 35688465 - 35688298
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtga--tgtttttattgtccttttacagt 394  Q
    ||||||||| |||||   || |||||||||||||||||||||       ||| |||| ||||||||||||||||   | ||||||||||| ||| | |||    
T  35688465 gctaaatactacgattcatattattttatgagttgatttgaaattttttggatcatagttttatttcaattgtgggttttttttattgtcttttcatagt 35688366  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |||| |||||||||||| | | ||||||  ||||||||||||||||  ||||||| |||| |||||||    
T  35688365 taaaatgcgggtaatgggtgcgggtatgggcacttaggtgcccataggatatggggaagggcactaaa 35688298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 369 - 440
Target Start/End: Complemental strand, 51055548 - 51055477
Alignment:
Q  369 tgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||||||||||||| ||||||||||||| |||||||| ||||||||  ||||||||||| ||||    
T  51055548 tgatgtttttattgtccttttatagttaaagtgcggataatggatgcaggtatgtgcacttaggtgctcata 51055477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 440
Target Start/End: Complemental strand, 48583873 - 48583747
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||| ||||||||||||       ||| ||||||||||||||||||||| ||||||| |||||| ||| |  ||||||||||||||||||  |    
T  48583873 tactattttattagttgatttgaaattttgaggatcataattttatttcaattgtggtgttttttattgtcttttcatggttaaagtgcgggtaatgact 48583774  T
Q  414 tcaggtatgaccacttaggtgcccata 440  Q
     ||||||||  |||||| |||||||||    
T  48583773 gcaggtatgtgcacttaagtgcccata 48583747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 431
Target Start/End: Original strand, 5041050 - 5041134
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttag 431  Q
    ||||||| ||||||||||||||||||||||||||| || ||| | ||||||||||||| |||||| | ||||||||  |||||||    
T  5041050 gaccatagttttatttcaattgtgatgtttttattatcttttcatagttaaagtgcggataatgggtgcaggtatgggcacttag 5041134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 479
Target Start/End: Complemental strand, 25467598 - 25467466
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtcctttta----cagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaata 445  Q
    ||||||||||||||||||||||||||||||||||  ||| |     ||||||| |||||||||||| | | ||||||| ||||||| | ||||||| |||    
T  25467598 cataattttatttcaattgtgatgtttttattgttttttcatagttagttaaattgcgggtaatgggtgcgggtatgagcacttagatacccataagata 25467499  T
Q  446 tgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||| |||| |||| ||| ||||||| |||||||    
T  25467498 tggggaagggcact-aaagttgttgcccacgagg 25467466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 33558789 - 33558846
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    |||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  33558789 catagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggta 33558846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 315 - 456
Target Start/End: Original strand, 54444359 - 54444501
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgat-gtttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||||||||||||||||       |||||||| |||||||||||| || ||  ||||||||||| ||| | ||||||||||| |||||||| |    
T  54444359 tactattttatgagttgatttgaaaattcttggaccatagttttatttcaatcgtaatattttttattgtcttttcatagttaaagtgctggtaatgggt 54444458  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggac 456  Q
       | ||||| ||||||| ||| |||| ||||||| |||||||    
T  54444459 gtggatatgaacacttagatgctcatagaatatggaaaaggac 54444501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 407
Target Start/End: Complemental strand, 35203391 - 35203302
Alignment:
Q  318 tattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||| |||||||||||||       | |||||| |||||||||||||||||| ||||||||||| ||| | ||||||||||||||||    
T  35203391 tattttacgagttgatttgaaaaaatttgaaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcgggta 35203302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 483
Target Start/End: Complemental strand, 49374856 - 49374769
Alignment:
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatac 483  Q
    ||||||||||||||||| | | ||||||| |||||| |||||||||   |||||||||||||||||||| ||||||  |||||||||||    
T  49374856 taaagtgcgggtaatgggtgcgggtatgagcacttaagtgcccatagggtatgggaaaggacactaaaa-ttgttgtccacgaggatac 49374769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 347 - 462
Target Start/End: Complemental strand, 12905726 - 12905611
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||| ||||| ||||| ||| | |||||||||||| ||||||| | |  ||||   ||||||||| |||||| | | |    
T  12905726 gaccatagttttatttcaattgtgatatttttgttgtcatttcatagttaaagtgcgagtaatgggtgcgagtatagacacttaggtacccatagagttt 12905627  T
Q  447 gggaaaggacactaaa 462  Q
    ||| ||||||||||||    
T  12905626 ggggaaggacactaaa 12905611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 8340286 - 8340160
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    |||||||||||||||||||| |||       ||| |||| |||||||||||||||| ||  ||||||||||| ||| | ||||||| |||||||||| |     
T  8340286 tactattttatgagttgattcgaaattttttggatcatagttttatttcaattgtggtggttttttattgtcttttcatagttaaaatgcgggtaatagg 8340187  T
Q  413 ttcaggtatgaccacttaggtgcccat 439  Q
    | | ||||||  |||||||||||||||    
T  8340186 tgcgggtatgggcacttaggtgcccat 8340160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 40564054 - 40563992
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaat 409  Q
    ||||||| ||||||||||||||||||||||||||| || ||| |  |||||||||||||||||    
T  40564054 gaccatagttttatttcaattgtgatgtttttattttcttttcattgttaaagtgcgggtaat 40563992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 19454949 - 19454765
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgt--gatgtttttattgtcctttt-acag 393  Q
    ||||||||| |||||   || |||||||||||||||||||||       ||| ||||||||||||||||||||  | | ||||||||||| |||| | ||    
T  19454949 gctaaatactacgattcatattattttatgagttgatttgaaattttttggatcataattttatttcaattgtgggttttttttattgtctttttcatag 19454850  T
Q  394 ttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||| || ||||||||| | ||| ||||  |||||| ||||||||| | |||||| ||||  ||| ||| ||||||| |||||||    
T  19454849 ttaaaatgtgggtaatgggtgcagatatggacacttaagtgcccatagagtatggggaagggtact-aaagttgttgcccacgagg 19454765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 42096741 - 42096854
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| | | ||||||  |||||| |||||||||   |||||    
T  42096741 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgcgggtatgggcacttaagtgcccatagggtatgg 42096840  T
Q  449 gaaaggacactaaa 462  Q
    | |||| |||||||    
T  42096841 ggaagggcactaaa 42096854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 358 - 433
Target Start/End: Complemental strand, 7940431 - 7940356
Alignment:
Q  358 tatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||||||||||||||||| | || ||| | || ||||||||||||||||||| | ||||||  |||||||||    
T  7940431 tatttcaattgtgatgtttttactatcttttcatagctaaagtgcgggtaatggatgcgggtatgggcacttaggt 7940356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 407
Target Start/End: Complemental strand, 14418376 - 14418284
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    |||||||||||||| |||||||||       | || ||||||||| |||||||||||| |||||||| || ||| | ||||||||||||||||    
T  14418376 tactattttatgaggtgatttgaaattttttgaactataattttaattcaattgtgatatttttattatcttttcatagttaaagtgcgggta 14418284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 413
Target Start/End: Original strand, 22845125 - 22845191
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||||||| ||||||||||| |||||||||||||||||| ||| | ||||||| ||| ||||||||||    
T  22845125 ggaccatagttttatttcaaatgtgatgtttttattgtcttttcatagttaaaatgc-ggtaatggat 22845191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 33099790 - 33099698
Alignment:
Q  314 gtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggt 406  Q
    |||| |||| |||||||||||||||       | |||||| |||||||||||||||||| ||||||||||| ||| | |||||||||| ||||    
T  33099790 gtaccatttgatgagttgatttgaaattttttgaaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgagggt 33099698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 389
Target Start/End: Original strand, 23298324 - 23298366
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtcctttt 389  Q
    ||||||| |||||||||||||||||||||||||||||| ||||    
T  23298324 gaccatagttttatttcaattgtgatgtttttattgtcttttt 23298366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 411
Target Start/End: Original strand, 30248000 - 30248115
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtt-tttattgtccttttacagtt 395  Q
    ||||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||| || ||||||||| ||| | ||      
T  30248000 gctaaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatattatttattgtcttttcatagag 30248099  T
Q  396 aaagtgcgggtaatgg 411  Q
    ||||||||||||||||    
T  30248100 aaagtgcgggtaatgg 30248115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 479
Target Start/End: Original strand, 45079204 - 45079333
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||||||||||| ||||||||||| ||| |  |  |||||||||||||||| | | ||||||  |||||| |||||||||   |||||    
T  45079204 catagttttatttcaattgtgatgttttttattgtcttttcatcgagaaagtgcgggtaatgggtgcgggtatgggcacttaagtgcccatagggtatgg 45079303  T
Q  449 gaaaggacactaaaatttgttgcacacgagg 479  Q
    | |||| |||| ||| ||||||| |||||||    
T  45079304 ggaagggcact-aaagttgttgcccacgagg 45079333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 411
Target Start/End: Original strand, 26787597 - 26787657
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||| |||||||||||| |||||||||||||||| |||||| | |||||||| |||||||||    
T  26787597 catagttttatttcaatggtgatgtttttattgt-cttttataattaaagtgtgggtaatgg 26787657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 438
Target Start/End: Complemental strand, 46819272 - 46819180
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgccca 438  Q
    |||||||| ||||||||||||||||||||||||||| |  ||| | || ||||||| ||||||| | |   ||||||| ||||||||| ||||    
T  46819272 ggaccatagttttatttcaattgtgatgtttttattcttttttcatagctaaagtgtgggtaataggtgagggtatgagcacttaggtaccca 46819180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 24987411 - 24987478
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    |||||||||| ||||||||||||| ||||  ||  | |||||||||||||||||||||| | ||||||    
T  24987411 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatggatgcgggtatg 24987478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 401
Target Start/End: Original strand, 25630313 - 25630368
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtg 401  Q
    ||||||||  ||||||||||||||||||||||||||||  ||| | ||||||||||    
T  25630313 ggaccataggtttatttcaattgtgatgtttttattgttttttcatagttaaagtg 25630368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 27064301 - 27064210
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||| ||||||||||| |||| | ||||| | |||||||| ||||||||| | | ||| ||  ||||||||||||||||    
T  27064301 catagttttatttcaatggtgatgttttttattgcctttttataattaaagtgtgggtaatgggtacgggtgtgggcacttaggtgcccata 27064210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 30964594 - 30964661
Alignment:
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |||| ||||| |||||| | ||||||||| |||||| ||| ||||| |||||||||||||||| ||||    
T  30964594 taaattgcggataatgggtgcaggtatgaacacttaagtgtccatagaatatgggaaaggacattaaa 30964661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Original strand, 30980406 - 30980473
Alignment:
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |||| ||||| |||||| | ||||||||| |||||| ||| ||||| |||||||||||||||| ||||    
T  30980406 taaattgcggataatgggtgcaggtatgaacacttaagtgtccatagaatatgggaaaggacattaaa 30980473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 41410203 - 41410347
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| |||||   ||||||||||| ||||||||| ||       ||| |||| ||||||||||||||||||| ||||||||||| ||| | ||      
T  41410203 gctaaatactacgattcatactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 41410302  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||| ||||||||  | | ||||||  ||||||||||| ||||    
T  41410303 aaagtgtgggtaatgcgtgcgggtatgggcacttaggtgctcata 41410347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 411
Target Start/End: Original strand, 2013004 - 2013115
Alignment:
Q  301 aataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgat-gtttttattgtccttttacagttaaag 399  Q
    ||||| ||||| | ||||||||||||||||| ||| ||       ||| |||| ||||||||||||||||||  ||||||||||| ||||| | ||||||    
T  2013004 aatactacgatttctactattttatgagttgctttaaaaaaaattggatcatagttttatttcaattgtgatattttttattgtctttttataattaaag 2013103  T
Q  400 tgcgggtaatgg 411  Q
    || || ||||||    
T  2013104 tgtggataatgg 2013115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 6408678 - 6408592
Alignment:
Q  355 ttttatttcaattgtgatgtttttatt-gtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||| || ||  ||| | |||||||||||||||||||| | | ||||||  ||||||||| ||||||    
T  6408678 ttttatttcatttgtgatgtttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaggtacccata 6408592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 19618788 - 19618710
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||||| ||||||||||||| ||||  | | | |||||||||||||||||||| | | ||||||  |||||||||    
T  19618788 ttttatttcatttgtgatgttttttttgttttatcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaggt 19618710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 39952623 - 39952573
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaa 397  Q
    ||||||| ||||||||||||||||||||||||| |||| ||| | ||||||    
T  39952623 gaccatagttttatttcaattgtgatgtttttactgtcttttcatagttaa 39952573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 50622256 - 50622315
Alignment:
Q  350 cataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggta 407  Q
    |||| |||||||||||||||||||  ||||||||||| ||| | |||||||||| |||||    
T  50622256 catagttttatttcaattgtgatgtttttttattgtcttttcatagttaaagtgtgggta 50622315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 347 - 479
Target Start/End: Complemental strand, 41983364 - 41983233
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| | ||||||||| ||||||||| |||||| |  ||    
T  41983364 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatgggtgcaggtatgagcacttaggtacccatagagcat 41983265  T
Q  447 gggaaaggacactaaaatttgttgcacacgagg 479  Q
     ||||| |||||| ||| ||||||| |||||||    
T  41983264 aggaaatgacact-aaagttgttgcccacgagg 41983233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 353 - 462
Target Start/End: Original strand, 22632242 - 22632351
Alignment:
Q  353 aattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaa 452  Q
    |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||  | ||||||||| ||||||||| |||||||  |||||| ||    
T  22632242 aattttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatgagtgcaggtatgatcacttaggtacccataaggtatggggaa 22632341  T
Q  453 ggacactaaa 462  Q
     | |||||||    
T  22632342 tggcactaaa 22632351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 350 - 479
Target Start/End: Complemental strand, 7978144 - 7978016
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    ||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||| | | ||||||| ||||||| | ||||||   ||||||    
T  7978144 cataattttatttcaattgtgatgtttttattgttttttcatagttaaagtgcgggtaatgggtgcgggtatgagcacttagatacccatagggtatggg 7978045  T
Q  450 aaaggacactaaaatttgttgcacacgagg 479  Q
     |||| |||| ||| ||||||| |||||||    
T  7978044 gaagggcact-aaagttgttgcccacgagg 7978016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 479
Target Start/End: Complemental strand, 29455907 - 29455776
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| ||||||||||||||||||||||||||| || ||| | |||||||||| ||||||||| | | ||||||  ||||||| | |||||||  |||    
T  29455907 gaccatagttttatttcaattgtgatgtttttattatcttttcatagttaaagtgtgggtaatgggtgcgggtatgggcacttagatacccataaggtat 29455808  T
Q  447 gggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||| |||| |||| ||| ||||||| |||||||    
T  29455807 ggggaagggcact-aaagttgttgcccacgagg 29455776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 484
Target Start/End: Original strand, 16620307 - 16620441
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||||||||||| ||||||||||| ||| |  | ||||||| || |||||| | || |||||| |||||||||| |||||||||||||    
T  16620307 catagttttatttcaattgtgatgctttttattgtcttttcattgctaaagtgtggataatgggtacaagtatgagcacttaggtgtccataaaatatgg 16620406  T
Q  449 gaaaggacactaaaatttgttgcacacgaggataca 484  Q
      ||||||||| ||| ||||||| |||||| |||||    
T  16620407 agaaggacact-aaagttgttgcccacgagaataca 16620441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 411
Target Start/End: Original strand, 24489032 - 24489128
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||||||||||||||||||||       | |||||| |||||||||||||||||| ||||||||||| ||| | |||||||||| |||||||||    
T  24489032 tactattttatgagttgatttgaaaatttttgaaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgtgggtaatgg 24489128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 299 - 484
Target Start/End: Complemental strand, 16186933 - 16186748
Alignment:
Q  299 taaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagttaa 397  Q
    ||||||| ||||| | ||||||||||| ||||||||||||       ||| |||||||||||||||||| || ||||||| |||||| ||| || |||||    
T  16186933 taaatactacgatttatactattttattagttgatttgaaattttttggatcataattttatttcaattatggtgttttttattgtcttttcacggttaa 16186834  T
Q  398 agtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg-ggaaaggacactaaaatttgttgcacacgaggataca 484  Q
    |||||||||||||| | |  |||||  |||||| || |||||||| |||| |||||||| ||| ||| ||||||| ||||||| ||||    
T  16186833 agtgcgggtaatgggtgcgtgtatgggcacttaagtacccataaagtatgtggaaagga-act-aaagttgttgctcacgagggtaca 16186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 6224837 - 6224897
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  6224837 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggta 6224897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 411
Target Start/End: Complemental strand, 18595477 - 18595413
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||||||||||||| ||||||||||  ||||| ||||||||||||| ||||||    
T  18595477 gaccataattttatttcaattgtgatatttttattgtttttttatagttaaagtgcggataatgg 18595413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 31149686 - 31149750
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  31149686 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcggataatgg 31149750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 462
Target Start/End: Original strand, 4901901 - 4902047
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       ||| |||| |||||||||||||||||||  ||||||||||| ||| | |||||   ||||||||||||     
T  4901901 tactattttatgagttgatttgaaattttttggatcatatttttatttcaattgtgatgcttttttattgtcttttcatagtta---tgcgggtaatggg 4901997  T
Q  413 ttcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    | | ||||||  ||||||||||||||||   |||||| |||| |||||||    
T  4901998 tgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaa 4902047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 479
Target Start/End: Original strand, 639302 - 639484
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||| || |||||||| || ||| |  |||    
T  639302 gctaaatactacgatttatactattttattagttgatttgaaattttttggatcataattttatttcaattgtggtgttttttattttcttttcatggtt 639401  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    || ||||||||||| ||| | ||||||  |||||| || ||||||   |||||| || |||||| ||| ||||||| |||||||    
T  639402 aatgtgcgggtaattgatgcgggtatgggcacttaagtacccatagggtatggggaaagacact-aaagttgttgcccacgagg 639484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 14087776 - 14087715
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| ||||||    
T  14087776 cataattttatttcaattgtgatgtttttattgttttttcatagttaaagtgcggataatgg 14087715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 23141560 - 23141677
Alignment:
Q  293 ttttgctaaataccacgatgt-gtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttac 391  Q
    ||||| ||||||| ||||| | ||||| |||||||||| ||||||||       | |||| |||||||||||||||||||| ||||||||||| ||| |     
T  23141560 ttttgttaaatactacgattttgtacttttttatgagtcgatttgaaaaattgtgaaccacaattttatttcaattgtgatatttttattgtcttttcat 23141659  T
Q  392 agttaaagtgcgggtaat 409  Q
    ||||||| ||||||||||    
T  23141660 agttaaaatgcgggtaat 23141677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 36470441 - 36470557
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaata 445  Q
    |||||||| |||||||||||||||||||||||||||    ||| | || |||||||| |||||||| | | ||||||  ||||||||| |||||| | ||    
T  36470441 ggaccatagttttatttcaattgtgatgtttttattcctttttcatagctaaagtgctggtaatgggtgcgggtatggacacttaggtacccatagagta 36470540  T
Q  446 tgggaaaggacactaaa 462  Q
    |||| |||| |||||||    
T  36470541 tggggaagggcactaaa 36470557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 4572376 - 4572291
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||| ||||| ||| | ||||||||||||| |||||||| |  |||||| ||||||| | ||||||    
T  4572376 ttttatttcatttgtgatgttttttttgtcttttcatagttaaagtgcggataatggatgcgagtatgagcacttagatacccata 4572291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 462
Target Start/End: Original strand, 19254428 - 19254594
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| |||||   ||||||||||| ||||||||| ||       ||| |||| ||||||||||||||||||| ||||||||||| ||| | ||      
T  19254428 gctaaatactacgattcatactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 19254527  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |||||||||||||||| | | ||||||  |||||| |||| ||||   |||||| |||| |||||||    
T  19254528 aaagtgcgggtaatgggtgcgggtatgggcacttaagtgctcatagggtatggggaagggcactaaa 19254594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 465
Target Start/End: Complemental strand, 38309943 - 38309774
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgt-ttttattgtccttttacagtt 395  Q
    ||||||||  |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||||| |||| ||||| ||| | ||      
T  38309943 gctaaatattacgattcgtactattttattagttgatttaaataatttcggatcatagttttatttcaattgtgatgttttttgttgtcttttcatagag 38309844  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatt 465  Q
    ||||||||| |||||  | | ||||||| |||||| |||||||||   |||||||||||  |||||||||    
T  38309843 aaagtgcggataatgtgtgcgggtatgagcacttaagtgcccatagggtatgggaaagggtactaaaatt 38309774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 412
Target Start/End: Original strand, 5657662 - 5657777
Alignment:
Q  299 taaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttt--tattgtccttttacagtta 396  Q
    ||||||| ||||| | ||||||||||||||||| ||| ||       ||| |||| |||||||||||| ||||||||||  ||||||| ||||| | |||    
T  5657662 taaatactacgatttctactattttatgagttgctttaaaaaaaattggatcatagttttatttcaatagtgatgtttttttattgtctttttataatta 5657761  T
Q  397 aagtgcgggtaatgga 412  Q
    |||||||| |||||||    
T  5657762 aagtgcggataatgga 5657777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 440
Target Start/End: Original strand, 15673941 - 15674064
Alignment:
Q  319 attttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattca 416  Q
    ||||||||||||||||||||       ||| ||||||| ||||||| ||||| ||  ||||||||||| ||| | ||||||| ||||| |||||| | |     
T  15673941 attttatgagttgatttgaaattttctggatcataattgtatttcagttgtggtgcttttttattgtcttttcagagttaaattgcggataatgggtgcg 15674040  T
Q  417 ggtatgaccacttaggtgcccata 440  Q
    ||||||  ||||||||||||||||    
T  15674041 ggtatggacacttaggtgcccata 15674064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 34718777 - 34718868
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  34718777 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 34718868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 36323188 - 36323077
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagtta 396  Q
    ||||||||| |||||   || ||||| |||||||||||||||       |||||||| ||||||| |||| |||||||||||||||||| || | |||||    
T  36323188 gctaaatactacgattcatattatttgatgagttgatttgaaaaattttggaccatagttttattccaatcgtgatgtttttattgtcc-ttcatagtta 36323090  T
Q  397 aagtgcgggtaat 409  Q
    ||||||| |||||    
T  36323089 aagtgcgagtaat 36323077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 41692461 - 41692552
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  41692461 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 41692552  T

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Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 14088376 - 14088298
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||||| ||||||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  |||||||||    
T  14088376 ttttatttcatttgtgatgttttttttgttttttcatagttaaagtgcgggtaatgggtacgggtatgggcacttaggt 14088298  T

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Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 32302457 - 32302390
Alignment:
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    ||||||||||||||||| | | ||||||  |||||| ||||||||||  |||||| ||||||||||||    
T  32302457 taaagtgcgggtaatgggtgcgggtatgggcacttaagtgcccataaggtatggggaaggacactaaa 32302390  T

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Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 440
Target Start/End: Original strand, 33347037 - 33347160
Alignment:
Q  319 attttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattca 416  Q
    ||||||||||||||||||||       ||| ||||||| ||||||| ||||| ||  ||||||||||| ||| | ||||||| ||| | |||||| | |     
T  33347037 attttatgagttgatttgaaattttctggatcataattgtatttcagttgtggtgcttttttattgtcttttcagagttaaattgcagataatgggtgcg 33347136  T
Q  417 ggtatgaccacttaggtgcccata 440  Q
    ||||||  ||||||||||||||||    
T  33347137 ggtatggacacttaggtgcccata 33347160  T

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Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 35853636 - 35853523
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||| |||| || |||||||| || ||| |  | ||||||||||||||||| | | ||||||  |||||| |||||||||   |||||    
T  35853636 catagttttatttcaagtgtggtgatttttattatcttttcatggctaaagtgcgggtaatgggtgcgggtatgggcacttaagtgcccatagggtatgg 35853537  T
Q  449 gaaaggacactaaa 462  Q
    | ||||||||||||    
T  35853536 ggaaggacactaaa 35853523  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 297 - 506
Target Start/End: Complemental strand, 2960108 - 2959899
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| || ||  |||||||||||||||||||||||||       ||| ||||||||||||||||||||||||||||| |||||| ||| | ||||    
T  2960108 gctaaatactacaattcgtactattttatgagttgatttgaaattttttggatcataattttatttcaattgtgatgttttttattgtcatttcatagtt 2960009  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattatttttta 495  Q
    |||||||||||||| |||   ||||||  ||||||||||||||||    ||||| |||| |||| ||| || |||| |||||||||||    ||||||||    
T  2960008 aaagtgcgggtaatagatgtgggtatggacacttaggtgcccatacggaatggggaagggcact-aaagttattgcccacgaggatacggacatttttta 2959910  T
Q  496 caaatgcgggt 506  Q
    ||||| |||||    
T  2959909 caaatacgggt 2959899  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 511
Target Start/End: Original strand, 43702406 - 43702569
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||||  ||||||||| ||||||   |||    
T  43702406 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatggatgcgggtatgggcacttaggtacccatagggtat 43702505  T
Q  447 gggaaaggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgggtgtggg 511  Q
    ||| |||  |||| ||| ||||| | ||||||| ||| | || |||||||||||| |||| ||||    
T  43702506 ggggaagagcact-aaagttgttacccacgagggtacgaataatttttacaaatgtgggtatggg 43702569  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 44300886 - 44300704
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||||||||| |||||| ||| | ||      
T  44300886 gctaaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 44300787  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||||||||| || | ||||||||  |||||| |||||||||| ||||||| |||| |||| ||| ||||||| |||||||    
T  44300786 aaagtgcgggtaacgggtgcaggtatgggcacttaagtgcccataagatatggggaagggcact-aaagttgttgcccacgagg 44300704  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 43224437 - 43224325
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    ||||||||||||||||||||||||||||||||||  ||| | |||||||||||||||||||| | ||||||||  ||||||| | ||||||   ||||||    
T  43224437 cataattttatttcaattgtgatgtttttattgttttttcatagttaaagtgcgggtaatgggtgcaggtatgggcacttagatacccatagggtatggg 43224338  T
Q  450 aaaggacactaaa 462  Q
     |||| |||||||    
T  43224337 gaagggcactaaa 43224325  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 36074118 - 36074231
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    ||||||||||||||||||||||||||||| ||||||  |||| | |||||||||||||||||| | | ||||||  ||||||||||||||||   |||||    
T  36074118 cataattttatttcaattgtgatgtttttaattgtctatttataattaaagtgcgggtaatgggtacgggtatgggcacttaggtgcccatagggtatgg 36074217  T
Q  449 gaaaggacactaaa 462  Q
    | |||| |||||||    
T  36074218 ggaagggcactaaa 36074231  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 355 - 504
Target Start/End: Original strand, 5924068 - 5924218
Alignment:
Q  355 ttttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaa 452  Q
    |||||||||||||||||||  ||||||||||| ||| | |||||||||||||||||||| | ||||||||  |||||||||||||| |   |||||| ||    
T  5924068 ttttatttcaattgtgatgcttttttattgtcttttcatagttaaagtgcgggtaatgggtgcaggtatggacacttaggtgcccacagggtatggggaa 5924167  T
Q  453 ggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgg 504  Q
    || |||| ||| ||||| | ||||||| |||   ||||||||||||| ||||    
T  5924168 gggcact-aaagttgttacccacgagggtacgggtattttttacaaacgcgg 5924218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 313 - 483
Target Start/End: Original strand, 38469876 - 38470046
Alignment:
Q  313 tgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||||||||| ||||||||||||       |||  ||| |||||||| ||||||| ||||||| |||||  ||||||||||||||||||||||||||    
T  38469876 tgtactattttataagttgatttgaaattttatggattatagttttattttaattgtggtgttttttattgtatttttacagttaaagtgcgggtaatgg 38469975  T
Q  412 attcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatac 483  Q
     | | ||||||  |||||| ||||||||    |||||| ||||  ||||||| ||||||| |||||||||||    
T  38469976 gtgcgggtatgggcacttaagtgcccattgggtatggggaagggtactaaaa-ttgttgcccacgaggatac 38470046  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 407
Target Start/End: Complemental strand, 9477768 - 9477708
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  9477768 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggta 9477708  T

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Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 346 - 433
Target Start/End: Original strand, 3551524 - 3551611
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||| || |||||||||||||||||||| |||||| ||| | |||||||||| ||||||||||| | ||||||  |||||||||    
T  3551524 ggaccatagttctatttcaattgtgatgttttcattgtcttttcatagttaaagtgtgggtaatggatacgggtatggacacttaggt 3551611  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 28067212 - 28067356
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| || || | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||| || ||||||||||| ||| |  |||    
T  28067212 gctaaatactacaatttatactattttattagttgatttgaaattttttggatcataattttatttcaattgtggtgttttttattgtcttttcatggtt 28067311  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    ||||||| |||||||| | ||||||||  |||||| || ||||||    
T  28067312 aaagtgcaggtaatgggtgcaggtatgggcacttaagtacccata 28067356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 440
Target Start/End: Complemental strand, 30391720 - 30391577
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtta 396  Q
    |||||||| |||||   ||||||||||||||||||||||||       ||| |||  |||||||||||||||| ||||||| |||||| ||| |  ||||    
T  30391720 ctaaatactacgattcatactattttatgagttgatttgaaattttttggatcatggttttatttcaattgtgctgttttttattgtcttttcatggtta 30391621  T
Q  397 aagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||| |||||||| | ||||||  |||||| |||||||||    
T  30391620 aagtgcggataatggatgcgggtatgggcacttaagtgcccata 30391577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 462
Target Start/End: Original strand, 1875982 - 1876150
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtga---tgtttttattgtccttttacag 393  Q
    ||||||||| |||||   || |||||||||||||||||||||       ||| ||||||||||||||||||| |    | ||||||||||| ||| | ||    
T  1875982 gctaaatactacgattgatattattttatgagttgatttgaaattttttggatcataattttatttcaattgcgggtttttttttattgtcttttcatag 1876081  T
Q  394 ttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    ||||| |||||||||||| | | ||||||  ||||||||||||||||   |||||| |||| |||||||    
T  1876082 ttaaaatgcgggtaatgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaa 1876150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 356 - 440
Target Start/End: Original strand, 30738635 - 30738719
Alignment:
Q  356 tttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||| |   ||||||  ||||||||| ||||||    
T  30738635 tttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcaggtaatgggtgtgggtatgggcacttaggtacccata 30738719  T

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Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 40789473 - 40789638
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtta 396  Q
    |||||||  ||||| ||||||||||||| ||||||||| ||       ||| |||| ||||||||||||||||||| ||||||||||  ||| | ||  |    
T  40789473 ctaaatattacgatttgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgttttttcatagaga 40789572  T
Q  397 aagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    ||||||||||||||  | | ||||||  |||||| |||||||||   ||||||||||| |||||||    
T  40789573 aagtgcgggtaatgagtgcgggtatgggcacttaagtgcccatagggtatgggaaagggcactaaa 40789638  T

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Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 440
Target Start/End: Complemental strand, 45112350 - 45112223
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt--attgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       ||| ||||||| ||||||| ||||| || ||||  |||||| ||| | ||||||| | ||||||||||     
T  45112350 tactattttatgagttgatttgaaattttatggatcataattgtatttcagttgtggtgctttttcattgtcttttcagagttaaactacgggtaatggg 45112251  T
Q  413 ttcaggtatgaccacttaggtgcccata 440  Q
    | | ||||||| ||||||||||||||||    
T  45112250 tgcgggtatgagcacttaggtgcccata 45112223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 411
Target Start/End: Complemental strand, 16278582 - 16278487
Alignment:
Q  316 actattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||| ||| ||       ||| |||| |||||| ||||||||||||||||||||||| ||||| | |||||||| |||||||||    
T  16278582 actattttatgagttgctttaaaaaaaattggatcatagttttatatcaattgtgatgtttttattgtctttttataattaaagtgtgggtaatgg 16278487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 350 - 448
Target Start/End: Original strand, 38398427 - 38398525
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||||||| |||||||||||||| ||| | ||||||||||  ||||| |||| ||||||||  || ||||||| | ||||| |||||    
T  38398427 catagttttatttcaattgtaatgtttttattgtcttttcatagttaaagtgtaggtaacggatgcaggtatggacagttaggtgtcaataaagtatgg 38398525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 297 - 479
Target Start/End: Original strand, 40342257 - 40342439
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtga-tgtttttattgtccttttacagtt 395  Q
    ||||||||| |||||   || |||||||| ||||||||||||       ||| |||| ||||||||||||||||  | ||||||||||| ||| | ||||    
T  40342257 gctaaatactacgattcatattattttattagttgatttgaaattttttggatcatagttttatttcaattgtgggtttttttattgtcttttcatagtt 40342356  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||| ||||||||||||||   ||||||  |||||||||||| |||   |||||| |||| |||| ||| ||||||| |||||||    
T  40342357 aaaatgcgggtaatggatgggggtatgggcacttaggtgcctatagggtatggggaagggcact-aaagttgttgcccacgagg 40342439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 19805152 - 19805067
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||| ||||| ||||  ||| | |||||||||||||||||||| | | ||||||| ||||||||| ||||||    
T  19805152 ttttatttcatttgtgatattttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgagcacttaggtacccata 19805067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 42284624 - 42284563
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||| |||||||||||||||||||||||||||||| ||| | |||||||||| || ||||||    
T  42284624 catagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgtggataatgg 42284563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 38400969 - 38401041
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    |||| ||||||||||||||| |||||||||||||| ||| | ||||||||||  ||||| |||| ||||||||    
T  38400969 catagttttatttcaattgtaatgtttttattgtcttttcatagttaaagtgtaggtaacggatgcaggtatg 38401041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 479
Target Start/End: Original strand, 48558643 - 48558807
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||||||||||||||||       ||| |||  ||||||||||| |||| |||||| ||||||| ||| |  |||||||||||||||||||||    
T  48558643 tactattttatgagttgatttgaaattttttggatcatggttttatttcaactgtgctgttttttattgtcttttcatggttaaagtgcgggtaatggat 48558742  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
     | | ||||  |||||| ||| |||||   |||||| |||| |||| ||| ||||||| |||||||    
T  48558743 gcggatatggacacttaagtggccatagggtatggggaagggcact-aaagttgttgcccacgagg 48558807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 17172213 - 17172304
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  17172213 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 17172304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 479
Target Start/End: Complemental strand, 36072757 - 36072596
Alignment:
Q  319 attttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattca 416  Q
    ||||||||||||||| ||||       ||| ||||||| ||||| | ||||||||  ||||||||||| ||| | ||||||| |||||||||| | | |     
T  36072757 attttatgagttgatgtgaaattttcaggatcataattgtattttagttgtgatgcttttttattgtcttttcagagttaaattgcgggtaattggtgcg 36072658  T
Q  417 ggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||  ||||||||||||||||   |||||| |||| |||| ||| ||||||| |||||||    
T  36072657 ggtatgggcacttaggtgcccatagggtatggggaagggcact-aaagttgttgcccacgagg 36072596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 462
Target Start/End: Complemental strand, 11244180 - 11244031
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataatttta-tttcaattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       |||||||| ||||| ||||||||||||| | |||||||||| ||| | ||||||| ||  | ||||||     
T  11244180 tactattttatgagttgatttgaaaattttgggaccatagttttattttcaattgtgatatattttattgtcttttcatagttaaaatgttgataatggg 11244081  T
Q  413 ttcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    | | ||||||   |||||||| ||||||  ||||||| |||| |||||||    
T  11244080 tgcgggtatgggtacttaggtacccataggatatggggaagggcactaaa 11244031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 25309506 - 25309586
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccact 428  Q
    |||||| ||||||||| |||||||| ||||||||||| | |   |||||||||||||||| ||| | ||||||||| ||||    
T  25309506 accatagttttatttccattgtgatatttttattgtcttctcgtagttaaagtgcgggtagtgggtgcaggtatgaacact 25309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 407
Target Start/End: Original strand, 33067473 - 33067533
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||| |||||||||||||||||| ||||||||||| ||| |  | |||||||||||||    
T  33067473 gaccatagttttatttcaattgtgatatttttattgtcttttcattgctaaagtgcgggta 33067533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Complemental strand, 43218721 - 43218675
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtg 401  Q
    |||||||||||||||||| ||||||||||| ||| | ||||||||||    
T  43218721 ttttatttcaattgtgatatttttattgtcttttcatagttaaagtg 43218675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Original strand, 18319880 - 18319969
Alignment:
Q  202 acaccaaggcaccactttggattccacctccactcgtagaacaaacaaggttgaattttcagcctagctaaactccaactccacgacaac 291  Q
    |||||||| |||||| | |||||||| ||||| ||  |||||||||| || ||||| |||| ||| ||||| |||||  |||||||||||    
T  18319880 acaccaagacaccacctcggattccatctccattcaaagaacaaacatggctgaatcttcaacctcgctaagctccacttccacgacaac 18319969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 21153314 - 21153261
Alignment:
Q  355 ttttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggta 407  Q
    |||||||||||||||| ||||||| |||||| |||||  |||||||||||||||    
T  21153314 ttttatttcaattgtggtgttttttattgtctttttatggttaaagtgcgggta 21153261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 16567681 - 16567625
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  16567681 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 16567625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 16597981 - 16598037
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  16597981 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 16598037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 384
Target Start/End: Original strand, 27039750 - 27039786
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtc 384  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  27039750 accataatcttatttcaattgtgacgtttttattgtc 27039786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 46181327 - 46181271
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  46181327 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 46181271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 298 - 440
Target Start/End: Complemental strand, 610874 - 610732
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaa 397  Q
    |||||||| ||||| |||||| ||||||||||| |||| ||       ||||||||||||||||||||||||||||||||||||||| ||| | ||||||    
T  610874 ctaaatactacgatttgtactcttttatgagttaattttaaaaaatttggaccataattttatttcaattgtgatgtttttattgtcttttcatagttaa 610775  T
Q  398 agtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||||| | | ||||||  |||||| || ||||||    
T  610774 agtgcgggtaatgggtgcgggtatgtgcacttaagtacccata 610732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 347 - 483
Target Start/End: Complemental strand, 945595 - 945460
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| | | ||||||  ||||||| | ||||||  ||||    
T  945595 gaccatagttttatttcaattgtgatgtttttattgtctttttataattaaagtgcgggtaatgggtgcgggtatgggcacttagatacccataggatat 945496  T
Q  447 gggaaaggacactaaaatttgttgcacacgaggatac 483  Q
    ||| |||| |||| ||| ||||||| |||||||||||    
T  945495 ggggaagggcact-aaagttgttgcccacgaggatac 945460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 315 - 440
Target Start/End: Original strand, 29512173 - 29512298
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggatt 414  Q
    |||||||||||||||| |||| ||       |||||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||     
T  29512173 tactattttatgagttaattttaaaaaaattggaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatggatg 29512272  T
Q  415 caggtatgaccacttaggtgcccata 440  Q
    ||| ||||  ||||||||| ||||||    
T  29512273 cagatatgtgcacttaggtacccata 29512298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 465
Target Start/End: Original strand, 32835504 - 32835621
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg 447  Q
    |||||| |||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||  | | ||||||| ||||||||| |||||||| ||||    
T  32835504 accatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcgggtaatgagtgcgggtatgagcacttaggtacccataaagtatg 32835603  T
Q  448 ggaaaggacactaaaatt 465  Q
     | |||| ||||||||||    
T  32835604 aggaagggcactaaaatt 32835621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 298 - 479
Target Start/End: Original strand, 19996619 - 19996799
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaa 397  Q
    |||||||| ||||| |||| ||||||||||||| |||| ||        || |||| |||||||||||||||||||||||||||||| ||| | ||| ||    
T  19996619 ctaaatactacgatttgtattattttatgagttaattttaaaagatttagatcatagttttatttcaattgtgatgtttttattgtcttttcatagtcaa 19996718  T
Q  398 agtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||||||||||||| | | ||||||| ||||||| | ||||||   |||||| |||| |||| ||| ||||||| |||||||    
T  19996719 agtgcgggtaatgggtgcgggtatgaacacttagatacccatagggtatggggaagggcact-aaagttgttgcccacgagg 19996799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 298 - 479
Target Start/End: Complemental strand, 7842730 - 7842550
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaa 397  Q
    |||||||| ||||| |||| ||||||||||||| |||| ||        ||||||| ||||||||||| |||||||||||||||||| ||| | ||||||    
T  7842730 ctaaatactacgatttgtattattttatgagttaattttaagagatttagaccatagttttatttcaagtgtgatgtttttattgtcttttcatagttaa 7842631  T
Q  398 agtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||||||||||||  | | ||||||  ||||||| | |||||| | |||||  |||| |||| ||| | |||||||||||||    
T  7842630 agtgcgggtaatgagtgcgggtatgggcacttagatacccatagagtatggagaagggcact-aaagtagttgcacacgagg 7842550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 483
Target Start/End: Complemental strand, 25059216 - 25059081
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| ||||||||||||||| ||||||||| |||| ||| | |||||||||||||||||||| | | ||||||  ||||||| | ||||||   |||    
T  25059216 gaccatagttttatttcaattgtaatgtttttaatgtcttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttagatacccatagggtat 25059117  T
Q  447 gggaaaggacactaaaatttgttgcacacgaggatac 483  Q
    ||| |||| |||| ||| ||||||| |||||||||||    
T  25059116 ggggaagggcact-aaagttgttgcccacgaggatac 25059081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 350 - 465
Target Start/End: Original strand, 31873297 - 31873412
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| |||||||||||||||||||||||| |||||| ||||| | |||||||| ||||| ||| | ||||||||| |||||||||||||| ||  |||||    
T  31873297 catagttttatttcaattgtgatgttttttattgtctttttataattaaagtgtgggta-tgggtacaggtatgaacacttaggtgcccacaaggtatgg 31873395  T
Q  449 gaaaggacactaaaatt 465  Q
    | || ||||||||||||    
T  31873396 ggaatgacactaaaatt 31873412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 440
Target Start/End: Complemental strand, 20415134 - 20414990
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||||||||| |||||| ||| | ||      
T  20415134 gctaaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 20415035  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||||||| | | |||||| ||||||| |||||||||    
T  20415034 aaagtgcgggtaatgggtgcgggtatggccacttaagtgcccata 20414990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 465
Target Start/End: Complemental strand, 48985278 - 48985127
Alignment:
Q  316 actattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt--attgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||||||||||||||||||||||       |||  ||| |||||||||||||||||| |||||  |||||| ||| ||||||||| |||||||||||| |    
T  48985278 actattttatgagttgatttgaaattttatggattatagttttatttcaattgtgatatttttttattgtcttttcacagttaaaatgcgggtaatgggt 48985179  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatt 465  Q
     ||||||||  |||||| |||||||||   |||| | |||||||| ||||||    
T  48985178 gcaggtatggacacttaagtgcccatagggtatgaggaaggacacaaaaatt 48985127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 483
Target Start/End: Complemental strand, 9473098 - 9472928
Alignment:
Q  314 gtactattttatgagttgatttgaannnnnnnggaccataattttattt-caattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||| ||| ||||||||||||||       ||||||||||||||||| |||||||||| | |||||||||| ||| | |||||||||||| |||||||    
T  9473098 gtactagtttctgagttgatttgaaaattctgggaccataattttattttcaattgtgatatattttattgtcttttcatagttaaagtgcgagtaatgg 9472999  T
Q  412 attcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatac 483  Q
     | | |||||||  |||||| | |||||||  |||||||||  ||||| ||| ||||||| |||||||||||    
T  9472998 gtgcgggtatgagtacttagatacccataaggtatgggaaaatacact-aaagttgttgcccacgaggatac 9472928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 462
Target Start/End: Complemental strand, 10786331 - 10786217
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg 447  Q
    |||||| |||||||||||||||||| ||||||||||| ||| | | ||||||| |||||||||  | ||||||||| |||| |||||| |||||| ||||    
T  10786331 accatagttttatttcaattgtgatatttttattgtcttttcataattaaagtacgggtaatgagtgcaggtatgagcactaaggtgctcataaagtatg 10786232  T
Q  448 ggaaaggacactaaa 462  Q
    |  || |||||||||    
T  10786231 gagaatgacactaaa 10786217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 313 - 440
Target Start/End: Original strand, 31107606 - 31107734
Alignment:
Q  313 tgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||| ||||||||||       ||||||||||||||||| ||||||||| |||||||||| |||| | | |||||||||| ||||||||    
T  31107606 tgtactattttatgacttgatttgaaaaaatttggaccataattttattttaattgtgatatttttattgt-ctttcatatttaaagtgcgagtaatgga 31107704  T
Q  413 ttca--ggtatgaccacttaggtgcccata 440  Q
    | ||  ||||||| |||||| || ||||||    
T  31107705 tacacgggtatgagcacttaagtacccata 31107734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 462
Target Start/End: Complemental strand, 973625 - 973509
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaata 445  Q
    ||||| || |||||||||||||||||||||||||||||| ||| | | ||||||||||| |||||| | | | ||||  ||||||||| ||||||   ||    
T  973625 ggaccgtagttttatttcaattgtgatgtttttattgtcttttcataattaaagtgcggataatgggtgcggatatgtgcacttaggtacccatagggta 973526  T
Q  446 tgggaaaggacactaaa 462  Q
    ||||||| |||||||||    
T  973525 tgggaaatgacactaaa 973509  T

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Target: chr1; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 479
Target Start/End: Complemental strand, 19506498 - 19506367
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| ||||||||||||||||||||||||||| || ||| | |||||||||| ||||||||| | | ||||||  ||||||| | ||||||   |||    
T  19506498 gaccatagttttatttcaattgtgatgtttttattatcttttcatagttaaagtgtgggtaatgggtgcgggtatgggcacttagatacccatagggtat 19506399  T
Q  447 gggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||| |||| |||| ||| ||||||| |||||||    
T  19506398 ggggaagggcact-aaagttgttgcccacgagg 19506367  T

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Target: chr1; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 479
Target Start/End: Complemental strand, 28221074 - 28220952
Alignment:
Q  356 tttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaagga 455  Q
    |||||||||||||||||||||| |||||  ||| | |||||||||||||||||||| | | ||||||  ||||||| | ||||||   |||||||||||     
T  28221074 tttatttcaattgtgatgttttcattgttttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttagatacccatagggtatgggaaaggg 28220975  T
Q  456 cactaaaatttgttgcacacgagg 479  Q
    |||| ||| ||||||| |||||||    
T  28220974 cact-aaagttgttgcccacgagg 28220952  T

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Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 462
Target Start/End: Original strand, 2465514 - 2465661
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggatt 414  Q
    ||||||||||||||||||||||||       | |||||| |||||||| ||||||||| ||||||||||| | | | ||||||||| || | ||||  |     
T  2465514 tactattttatgagttgatttgaaaaaatttgaaccatagttttattttaattgtgatatttttattgtcttctcatagttaaagtacgagcaatgagtg 2465613  T
Q  415 caggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    | ||||||| |||| | ||||||||||  |||||||||| ||||||||    
T  2465614 cgggtatgaacactaatgtgcccataagttatgggaaagaacactaaa 2465661  T

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Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 499
Target Start/End: Original strand, 35949559 - 35949744
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       ||| |||| || ||||||| ||||| ||  ||||||||||| ||| | ||||||| ||||||||||||     
T  35949559 tactattttatgagttgatttgaaattttctggatcatagttgtatttcagttgtggtgcttttttattgtcttttcagagttaaactgcgggtaatggg 35949658  T
Q  413 ttcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattattttttacaaa 499  Q
    | | ||||||  |||||||||||||| |   |||||| || |||||| ||| ||||||  ||||||| ||| | |||||||||||||    
T  35949659 tgcgggtatgggcacttaggtgcccacagggtatggggaatgacact-aaagttgttgtccacgagggtacgaatattttttacaaa 35949744  T

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Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 293 - 440
Target Start/End: Complemental strand, 48662828 - 48662679
Alignment:
Q  293 ttttgctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttt--tattgtcctttta 390  Q
    ||||||||||||| |||||   || |||||||||||||||||||||       |||  ||||||||||||||||||||   ||||  ||||||| ||| |    
T  48662828 ttttgctaaatactacgattcatattattttatgagttgatttgaaattttttggataataattttatttcaattgtgggtttttattattgtcttttca 48662729  T
Q  391 cagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
     | ||||| |||||||||||| | | ||||||| ||||||||||||||||    
T  48662728 taattaaaatgcgggtaatgggtgcgggtatgaacacttaggtgcccata 48662679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 424687 - 424611
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    ||||| || |||||||||| ||||||||||||||||||| ||| | |||||||||| ||||||||| | ||||||||    
T  424687 ggaccgtagttttatttcatttgtgatgtttttattgtcttttcatagttaaagtgtgggtaatgggtgcaggtatg 424611  T

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Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 479
Target Start/End: Original strand, 31646262 - 31646422
Alignment:
Q  318 tattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcag 417  Q
    |||||||||||||||||||||       ||| |||| ||||||||||||||||   ||||| ||||| ||| | ||||||| ||||||||| || | | |    
T  31646262 tattttatgagttgatttgaaattttttggatcatagttttatttcaattgtgggttttttgttgtcttttcatagttaaaatgcgggtaacgggtgcgg 31646361  T
Q  418 gtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||||  ||||||||||||||||   |||||| |||| |||| ||| ||||||| |||||||    
T  31646362 gtatgggcacttaggtgcccatagggtatggggaagggcact-aaagttgttgcccacgagg 31646422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 38491513 - 38491461
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  38491513 ttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggta 38491461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 410
Target Start/End: Original strand, 2975245 - 2975300
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatg 410  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||    
T  2975245 ttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgggggtaatg 2975300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 2978526 - 2978471
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatg 410  Q
    |||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||    
T  2978526 ttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgggggtaatg 2978471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 34321057 - 34321000
Alignment:
Q  355 ttttatttcaattgtgatgttttt--attgtccttttacagttaaagtgcgggtaatg 410  Q
    |||| |||||||||||||||||||  |||||||||||||| |||||||||||||||||    
T  34321057 ttttctttcaattgtgatgtttttttattgtccttttacaattaaagtgcgggtaatg 34321000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 13797032 - 13797098
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt 381  Q
    |||||||||||||||| |||| ||       ||||||||||||||||||||||||||||||||||||    
T  13797032 tactattttatgagttaattttaaaaaaattggaccataattttatttcaattgtgatgtttttatt 13797098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 30489779 - 30489666
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| ||||||||||||| |||||||||| |||| | ||||| | |||||||||||||||||| | | |||||   |||||||||| |||||  ||||||    
T  30489779 catagttttatttcaattatgatgttttttattgactttttataattaaagtgcgggtaatgggtacgggtataggcacttaggtgtccataggatatgg 30489680  T
Q  449 gaaaggacactaaa 462  Q
    | |||| |||||||    
T  30489679 ggaagggcactaaa 30489666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 44327930 - 44328015
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  ||||||||| ||||||    
T  44327930 ttttatttcatttgtgatgttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatggacacttaggtacccata 44328015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 48796686 - 48796561
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       ||| |||| || ||||||| ||||| ||  ||||||||||| ||| | ||||||| ||||||||||||     
T  48796686 tactattttatgagttgatttgaaattttctggatcatagttgtatttcagttgtggtgcttttttattgtcttttcagagttaaactgcgggtaatggg 48796587  T
Q  413 ttcaggtatgaccacttaggtgccca 438  Q
    | | ||||||  ||||||||||||||    
T  48796586 tgcgggtatgggcacttaggtgccca 48796561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 4893287 - 4893378
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  4893287 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 4893378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 29185200 - 29185109
Alignment:
Q  350 cataattttatttcaattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||||||||||| |||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  29185200 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 29185109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 318 - 513
Target Start/End: Original strand, 29426274 - 29426471
Alignment:
Q  318 tattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg---tttttattgtccttttacagttaaagtgcgggtaatggatt 414  Q
    |||||||||||||||||||||       ||| |||| || |||||||| |||| ||   |||||||| || ||| | ||||||| || ||||||||| |     
T  29426274 tattttatgagttgatttgaaattttctggatcatagttgtatttcaactgtggtgctttttttattatcttttcagagttaaactgtgggtaatgggtg 29426373  T
Q  415 caggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgggtgtgggat 513  Q
    | ||||||  ||||||||||||||||   |||||| |||| |||| ||| ||||||| ||||||| |||   ||||||||||||| |||| | ||||||    
T  29426374 cgggtatgggcacttaggtgcccatatggtatggggaagggcact-aaagttgttgcccacgagggtacgggtattttttacaaacgcggatatgggat 29426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 403
Target Start/End: Original strand, 16177013 - 16177120
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| ||||| | | ||||||||||||||||||| ||       ||| |||| |||||||||||| |||||| ||||||||||| ||||| | ||    
T  16177013 gctaaatactacgatttctgctattttatgagttgatttaaaaaaaattggatcatagttttatttcaatggtgatgttttttattgtctttttataatt 16177112  T
Q  396 aaagtgcg 403  Q
    ||||||||    
T  16177113 aaagtgcg 16177120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 35659661 - 35659548
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgc-gggtaatggattcaggtatgaccacttaggtgcccataaaatat-g 447  Q
    |||| |||||||||||||||||||||||||||||  ||| | |||||| |||| ||||||||| | || |||| | ||||||||| |||||||  ||| |    
T  35659661 catagttttatttcaattgtgatgtttttattgt-atttcatagttaacgtgcggggtaatgggtgcatgtataaacacttaggtacccataaggtatgg 35659563  T
Q  448 ggaaaggacactaaa 462  Q
    || ||||||||||||    
T  35659562 gggaaggacactaaa 35659548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 21260743 - 21260800
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||||| ||||||||||||||||||||||||  ||| | |||||||||| |||||    
T  21260743 cataattttgtttcaattgtgatgtttttattgttttttcatagttaaagtgtgggta 21260800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 30622958 - 30623028
Alignment:
Q  313 tgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgt 383  Q
    ||||||||||||||||||||||||||       ||||||||  ||||||||||| ||||| ||||||||||    
T  30622958 tgtactattttatgagttgatttgaaaatttttggaccatagatttatttcaatcgtgatatttttattgt 30623028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 413
Target Start/End: Original strand, 3821270 - 3821334
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||||||||||||| ||| ||||    
T  3821270 catagttttatttcaattgtgatgttttttattgtcttttcatagttaaagtgcggataagggat 3821334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 441
Target Start/End: Complemental strand, 50099926 - 50099834
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataa 441  Q
    |||| |||||||||||||||| || |||||||| || ||| || |||||||||| |||||||| | | ||||||  |||||| ||||||||||    
T  50099926 catagttttatttcaattgtggtgttttttattatcttttcacggttaaagtgcaggtaatgggtgcgggtatgggcacttaagtgcccataa 50099834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 346 - 446
Target Start/End: Complemental strand, 236483 - 236381
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttatt--gtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaa 443  Q
    |||||||| || |||||||||||||||||||  |||  ||| ||| ||||||||||| || ||||||| | | ||||||  ||||||||| |||||| ||    
T  236483 ggaccatagttctatttcaattgtgatgtttaaattttgtcttttcacagttaaagtacgagtaatgggtacgggtatgggcacttaggtacccatagaa 236384  T
Q  444 tat 446  Q
    |||    
T  236383 tat 236381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 29054605 - 29054691
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtcctttt-acagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||||||    |||| | |||||||||||||||||||| | | ||||||  ||||||||| ||||||    
T  29054605 ttttatttcatttgtgatgtttttatttattttttcatagttaaagtgcgggtaatgggtgcgggtatggacacttaggtacccata 29054691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 40045032 - 40044995
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtc 384  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  40045032 gaccatagttttattacaattgtgatgtttttattgtc 40044995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 9222350 - 9222294
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  9222350 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 9222294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 407
Target Start/End: Original strand, 12560616 - 12560668
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    |||||||||| ||||||||||||| ||||  ||| | ||||||||||||||||    
T  12560616 ttttatttcatttgtgatgttttttttgttttttcatagttaaagtgcgggta 12560668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 484
Target Start/End: Complemental strand, 8614704 - 8614535
Alignment:
Q  314 gtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||||||||||||||||||||||||       | ||||| |||||| |||||||| ||| ||||||||||| ||| | ||||||||||||| ||||||||    
T  8614704 gtactattttatgagttgatttgaaactttttgaaccatgattttagttcaattgagatatttttattgtcttttcatagttaaagtgcggataatggat 8614605  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggataca 484  Q
     || ||| ||  ||| |||  ||||||| |||| ||||| |||||||||| ||||||| ||||||||||||    
T  8614604 gcaagtacgaggactaaggcacccataagatataggaaatgacactaaaa-ttgttgctcacgaggataca 8614535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 297 - 511
Target Start/End: Complemental strand, 22829914 - 22829700
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtga-tgtttttattgtccttttacagtt 395  Q
    ||||||||| |||||   || |||||||||||||||||||||       ||| |||| ||||||||||||||||  | ||||||||||  ||| | ||||    
T  22829914 gctaaatactacgattcatattattttatgagttgatttgaaattttttggatcatagttttatttcaattgtgggtttttttattgttttttcatagtt 22829815  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattatttttta 495  Q
    ||| |||||||||||| | | ||||||  ||||||||||||||||   |||||| |||| |||| ||| ||||||| ||||||| |||   |||||||||    
T  22829814 aaaatgcgggtaatgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcact-aaagttgttgcccacgagggtacgggtatttttta 22829716  T
Q  496 caaatgcgggtgtggg 511  Q
    |||| |||||| ||||    
T  22829715 caaacgcgggtatggg 22829700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 355 - 483
Target Start/End: Original strand, 1731044 - 1731171
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaagg 454  Q
    |||||||||||||||||||||||||||||| ||| | | |||||||||||  ||||||| ||||||||  ||||||||| |||||| | |||||| ||||    
T  1731044 ttttatttcaattgtgatgtttttattgtcttttcataattaaagtgcggacaatggatgcaggtatgggcacttaggtacccatagagtatggggaagg 1731143  T
Q  455 acactaaaatttgttgcacacgaggatac 483  Q
      ||| ||||||||||  ||||| |||||    
T  1731144 gtact-aaatttgttgttcacgaagatac 1731171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 22313343 - 22313455
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    ||||||||||||||||||||||||||||||||||  ||| | ||||||||||||| |||||  | | ||||||  ||||||| | ||||||  |||||||    
T  22313343 cataattttatttcaattgtgatgtttttattgttttttcatagttaaagtgcggataatgagtgcgggtatggacacttagatacccataggatatggg 22313442  T
Q  450 aaaggacactaaa 462  Q
     ||||||||||||    
T  22313443 gaaggacactaaa 22313455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 479
Target Start/End: Original strand, 34459616 - 34459747
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||  | || |||||  ||||||| | ||||||   |||    
T  34459616 gaccatagttttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatgagtgcaagtatgtgcacttagatacccatagggtat 34459715  T
Q  447 gggaaaggacactaaaatttgttgcacacgagg 479  Q
    | | || |||||| ||| |||||||||||||||    
T  34459716 gaggaatgacact-aaagttgttgcacacgagg 34459747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 297 - 433
Target Start/End: Original strand, 51806865 - 51807002
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttt-tattgtccttttacagtt 395  Q
    ||||||||| ||||| | ||||||||||||||||| ||| ||       ||| |||| |||||||||||| |||||||||| ||||||| ||||| | ||    
T  51806865 gctaaatactacgatttctactattttatgagttgcttttaaaaaaattggatcatagttttatttcaatggtgatgttttttattgtctttttataatt 51806964  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||||||||||| | ||||||||  |||||||||    
T  51806965 aaagtgcgggtaatgggtacaggtatgggcacttaggt 51807002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 484
Target Start/End: Complemental strand, 14595423 - 14595289
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| |||||||||||| ||||| ||||| |||||| ||||| | |||||||||||||||||||| | ||||||| |||||||||| ||||||  |||||    
T  14595423 catagttttatttcaatggtgatattttttattgtcgttttataattaaagtgcgggtaatggatacgggtatgagcacttaggtgtccataaggtatgg 14595324  T
Q  449 gaaaggacactaaaatttgttgcacacgaggataca 484  Q
      || |||||| ||| ||||| | ||||||||||||    
T  14595323 agaatgacact-aaagttgttacccacgaggataca 14595289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 7117885 - 7117973
Alignment:
Q  313 tgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgc 402  Q
    ||||||||||||||||||||||||||       |||||||||||||| |||||||||| |||||||||||| |||| | |||||||||||    
T  7117885 tgtactattttatgagttgatttgaaaaaatttggaccataattttagttcaattgtgttgtttttattgt-ctttcatagttaaagtgc 7117973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 479
Target Start/End: Original strand, 29405809 - 29405989
Alignment:
Q  299 taaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt-gtccttttacagttaa 397  Q
    ||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||| ||||| || ||| ||| | ||  ||    
T  29405809 taaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatatttttttttgtcttttcatagagaa 29405908  T
Q  398 agtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||| |||||| | ||||||||  |||||||||||||||| | |||||| |||| |||| ||| ||||||| |||||||    
T  29405909 agtgcggataatgggtgcaggtatgggcacttaggtgcccatagagtatggggaagggcact-aaagttgttgcccacgagg 29405989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 33983259 - 33983147
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    |||||||||||||||||||||||||||| ||| |  ||| | |||||||||||||||||||| | | ||||||  ||||||| | ||||||  |||| ||    
T  33983259 cataattttatttcaattgtgatgttttcattattttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttagatacccataggatatagg 33983160  T
Q  450 aaaggacactaaa 462  Q
    ||||| |||||||    
T  33983159 aaagggcactaaa 33983147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 462
Target Start/End: Original strand, 8644170 - 8644331
Alignment:
Q  301 aataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagt 400  Q
    ||||| |||||  |||||||||||||||||||||||||       | ||||| |||||| |||||||||||| ||||||||||| ||| | | |||||||    
T  8644170 aatactacgattcgtactattttatgagttgatttgaaaatttttgaaccatgattttagttcaattgtgatatttttattgtcttttcataattaaagt 8644269  T
Q  401 gcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |  | |||||||| | ||||||   ||| || | ||||||| ||||| |||| |||||||||    
T  8644270 gtagataatggatgcgggtatgggaactaagttacccataagatatgagaaatgacactaaa 8644331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 28928608 - 28928670
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaat 409  Q
    ||||||| ||||||||||||||| |||||||||||||| ||| | ||||||||||||| ||||    
T  28928608 gaccatagttttatttcaattgtaatgtttttattgtcttttcatagttaaagtgcggataat 28928670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 318 - 462
Target Start/End: Original strand, 31713589 - 31713735
Alignment:
Q  318 tattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtga--tgtttttattgtccttttacagttaaagtgcgggtaatggattc 415  Q
    |||||||||||||||||||||       ||| |||| ||||||||||||||||   | ||||||||||| ||| | | ||||| |||||||||| | | |    
T  31713589 tattttatgagttgatttgaaattttttggatcatagttttatttcaattgtgggttttttttattgtcttttcataattaaaatgcgggtaataggtgc 31713688  T
Q  416 aggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
     ||||||  |||||||||||||||| | |||||  ||||||||||||    
T  31713689 gggtatggacacttaggtgcccatagagtatggagaaggacactaaa 31713735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 361 - 462
Target Start/End: Complemental strand, 33733489 - 33733387
Alignment:
Q  361 ttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacact 459  Q
    |||||||||||||||||| |||||| ||| | ||  |||||||||||||||| | ||||||||  |||||| |||||||||   |||||| |||||||||    
T  33733489 ttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgcaggtatgggcacttaagtgcccatagggtatggggaaggacact 33733390  T
Q  460 aaa 462  Q
    |||    
T  33733389 aaa 33733387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 3387209 - 3387294
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||| ||||| ||| | |||||||||||||||||||| | | ||||||  |||||| || ||||||    
T  3387209 ttttatttcatttgtgatgttttttttgtcttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaagtacccata 3387294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 2224950 - 2225034
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccat 439  Q
    |||||||||| ||||||| ||||| ||||  ||| | |||||||||||||||||||| | | ||||||| ||||||||| |||||    
T  2224950 ttttatttcatttgtgatattttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgagcacttaggtacccat 2225034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 511
Target Start/End: Complemental strand, 22248037 - 22247822
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgt--ttttattgtccttttacagt 394  Q
    ||||||||| || || |||| |||||||| ||||||||| ||       ||| |||| ||||||||||||||||||||  |||||||||| ||| | ||     
T  22248037 gctaaatactacaatttgtattattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgtttttttattgtcttttcataga 22247938  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattatttttt 494  Q
     ||||||||| |||||| | | ||||||| |||||| ||||| |||   |||||| |||| |||| ||| ||||||| ||| ||| |||    |||||||    
T  22247937 gaaagtgcggataatgggtgcgggtatgagcacttaagtgcctatagggtatggggaagggcact-aaagttgttgcccacaagggtacgtgcatttttt 22247839  T
Q  495 acaaatgcgggtgtggg 511  Q
    ||||||| |||| ||||    
T  22247838 acaaatgagggtatggg 22247822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 402
Target Start/End: Complemental strand, 44808637 - 44808532
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagtta 396  Q
    ||||||||| ||||| | ||||||||||||||||| ||| ||       ||| ||||||||||| | | ||||||||||||||||||| ||||| | |||    
T  44808637 gctaaatactacgatttctactattttatgagttgctttaaaaaaaaatggatcataattttatataagttgtgatgtttttattgtctttttataatta 44808538  T
Q  397 aagtgc 402  Q
    ||||||    
T  44808537 aagtgc 44808532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 411
Target Start/End: Original strand, 50981907 - 50982004
Alignment:
Q  316 actattttatgagttgatttgaannnnnnnggaccataatttta-tttcaattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||||||||||       |||||||| ||||| ||||||||||||| | ||| |||||| ||||| ||||||||||| ||||||||    
T  50981907 actattttatgagttgatttgaaaaatttgggaccatagttttattttcaattgtgatatatttgattgtctttttatagttaaagtgcaggtaatgg 50982004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 352 - 411
Target Start/End: Complemental strand, 25938485 - 25938426
Alignment:
Q  352 taattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||||||||| ||||||||||||| ||||  ||||| ||||||||||| ||||||||    
T  25938485 taattttatttcatttgtgatgttttttttgtttttttatagttaaagtgctggtaatgg 25938426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 52802252 - 52802343
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  52802252 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 52802343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 53140734 - 53140643
Alignment:
Q  350 cataattttatttcaattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||||||||||| |||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  53140734 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 53140643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 21297273 - 21297331
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggta 407  Q
    |||||||||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||    
T  21297273 cataattttatttcaattatgatgttttttattgtcttttcatagttaaagtgcgggta 21297331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 29994400 - 29994330
Alignment:
Q  392 agttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |||||||||||||||||||||| |||||| |  || |||||| |||||| ||||||| ||||| |||||||    
T  29994400 agttaaagtgcgggtaatggatgcaggtacggacatttaggtacccatagaatatggaaaagggcactaaa 29994330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 481
Target Start/End: Original strand, 56445149 - 56445281
Alignment:
Q  350 cataattttatttcaattgtgatgttttt--attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg 447  Q
    |||| |||||||||||||||| |||||||  ||| || ||| |  | ||||||||||||||||| | |  |||||  |||||| ||||||||||  ||||    
T  56445149 catagttttatttcaattgtggtgtttttttattatcttttcatggctaaagtgcgggtaatgggtgcgagtatgggcacttaagtgcccataaggtatg 56445248  T
Q  448 ggaaaggacactaaaatttgttgcacacgaggat 481  Q
    || ||||||||| ||| ||||||| |||||||||    
T  56445249 gggaaggacact-aaagttgttgcccacgaggat 56445281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 432
Target Start/End: Complemental strand, 7262170 - 7262052
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||||||||||||||||       ||| |||| || ||||||| ||||| || ||||||||||| ||| | ||||||| |||||||||||| |    
T  7262170 tactattttatgagttgatttgaaattttctggatcatagttgtatttcagttgtggtgctttttattgtcttttcagagttaaactgcgggtaatgggt 7262071  T
Q  414 tcaggtatgaccacttagg 432  Q
     | ||||||  ||||||||    
T  7262070 gcgggtatgggcacttagg 7262052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 355 - 465
Target Start/End: Original strand, 39485126 - 39485238
Alignment:
Q  355 ttttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaa 452  Q
    |||||||||||||||||||  ||||||||||| ||||| | |||||||||||| ||||  | | | ||||  ||||||||||||   | | |||||| ||    
T  39485126 ttttatttcaattgtgatgtttttttattgtctttttataattaaagtgcgggcaatgtttacggatatgggcacttaggtgcctgcagagtatggggaa 39485225  T
Q  453 ggacactaaaatt 465  Q
    |||||||||||||    
T  39485226 ggacactaaaatt 39485238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 454
Target Start/End: Complemental strand, 41003440 - 41003338
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtcctttt---acagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaa 451  Q
    |||||||||| ||||||||||||| || |  ||||   | |||||||||||||||||||| | | ||||||| ||||||||| ||||||  ||||||| |    
T  41003440 ttttatttcatttgtgatgtttttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgagcacttaggtacccataggatatgggga 41003341  T
Q  452 agg 454  Q
    |||    
T  41003340 agg 41003338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 440
Target Start/End: Complemental strand, 45097722 - 45097594
Alignment:
Q  314 gtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt--attgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||| ||||||||| ||       ||| |||| |||||||| |||||||||||||||  |||||| ||| | ||  ||||||||||||||||    
T  45097722 gtactattttattagttgatttaaataattttggatcatagttttattttaattgtgatgtttttttattgtcttttcatagagaaagtgcgggtaatgg 45097623  T
Q  412 attcaggtatgaccacttaggtgcccata 440  Q
     | | |||||   ||||||||||||||||    
T  45097622 gtgcgggtataggcacttaggtgcccata 45097594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 422
Target Start/End: Complemental strand, 46030381 - 46030305
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    |||||||||||||||||||||||||||| |||||||    ||| | || ||||||||||||||| ||| | ||||||    
T  46030381 ggaccataattttatttcaattgtgatgcttttattcctttttcatagctaaagtgcgggtaatagatgcgggtatg 46030305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 407
Target Start/End: Complemental strand, 5798368 - 5798309
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    |||||||||||||||||||||| || ||||||||||| ||| ||| ||||| || |||||    
T  5798368 accataattttatttcaattgtaatatttttattgtcttttcacatttaaaatgtgggta 5798309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 7250519 - 7250566
Alignment:
Q  360 tttcaattgtgatgtttttattgtccttttacagttaaagtgcgggta 407  Q
    ||||||||||||||||||||||||| ||| | ||||||||||| ||||    
T  7250519 tttcaattgtgatgtttttattgtcttttcatagttaaagtgcaggta 7250566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 413
Target Start/End: Complemental strand, 21245956 - 21245899
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||||||||| ||||||||||||| ||||||||| | |||||||||| || ||||||||    
T  21245956 ttttatttcatttgtgatgttttt-ttgtcctttcatagttaaagtgtggataatggat 21245899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 31786494 - 31786424
Alignment:
Q  392 agttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    ||||||| |||||||||||| | | |||||   ||||||||||||||||   |||||||||||||||||||    
T  31786494 agttaaaatgcgggtaatgggtgcgggtatagacacttaggtgcccatagggtatgggaaaggacactaaa 31786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 42755458 - 42755380
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||| | ||||||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  |||||||||    
T  42755458 ttttatttgatttgtgatgttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgtgcacttaggt 42755380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 404
Target Start/End: Original strand, 2073611 - 2073668
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgg 404  Q
    ||||||| |||||| ||||||||||||||||||||||  ||| | ||| |||||||||    
T  2073611 gaccatagttttatctcaattgtgatgtttttattgtgttttcatagtcaaagtgcgg 2073668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 479
Target Start/End: Complemental strand, 11034794 - 11034690
Alignment:
Q  374 tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcac 473  Q
    ||||||||||| ||| | ||||||| ||||| |||||| | | ||||||  ||||||||||||||||   |||||| |||| |||| ||| ||||||| |    
T  11034794 tttttattgtcttttcagagttaaactgcggataatgggtgcgggtatgggcacttaggtgcccatagggtatggggaagggcact-aaagttgttgccc 11034696  T
Q  474 acgagg 479  Q
    ||||||    
T  11034695 acgagg 11034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 52595662 - 52595577
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||| | ||||||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  |||||| || ||||||    
T  52595662 ttttattttacttgtgatgttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatggacacttaagtacccata 52595577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 21075910 - 21075862
Alignment:
Q  392 agttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||||||||||||| | ||||||  ||||||||| ||||||    
T  21075910 agttaaagtgcgggtaatggatgcgggtatgggcacttaggtacccata 21075862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 29149009 - 29149065
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  29149009 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 29149065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 54979139 - 54979195
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  54979139 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 54979195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 347 - 483
Target Start/End: Original strand, 667963 - 668098
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatat 446  Q
    ||||||| |||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||| | | ||||||  ||||||||| ||||||  ||||    
T  667963 gaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcggataatgggtgcgggtatgggcacttaggtacccataggatat 668062  T
Q  447 gggaaaggacactaaaatttgttgcacacgaggatac 483  Q
    ||| |||| |||| ||| ||||||| |||||||||||    
T  668063 ggggaagggcact-aaagttgttgcccacgaggatac 668098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 29155460 - 29155364
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||| |||| ||       |||||||| ||||||||||||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  29155460 tactattttatgagttaatttaaaaaaaattggaccatagttttatttcaattgtgatgtttttaatgtcttttcatagttaaagtgcgggtaatgg 29155364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 465
Target Start/End: Original strand, 16711305 - 16711453
Alignment:
Q  317 ctattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattca 416  Q
    |||||||| |||||||||||||       |||||||| ||||||||||||| |||||||||||||||| ||| | | |||||| |||| |||||| | |     
T  16711305 ctattttacgagttgatttgaaaactttgggaccatagttttatttcaattatgatgtttttattgtcttttcatatttaaagagcggataatgggtacg 16711404  T
Q  417 ggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatt 465  Q
    ||||||  |||||| |||| ||||   |||| | ||||||| |||||||    
T  16711405 ggtatgggcacttaagtgctcatagggtatgaggaaggacattaaaatt 16711453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 436
Target Start/End: Original strand, 39767073 - 39767212
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| ||||| | ||||||||||||||||| ||| ||       ||| |||| |||||||||||||| ||| ||||| |||||  ||||| | ||    
T  39767073 gctaaatactacgatttctactattttatgagttgcttt-aaaaaaattggatcatagttttatttcaattgcgatattttttattgtatttttataatt 39767171  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcc 436  Q
    |||||| ||||||||| | ||||||||| ||||||||||||    
T  39767172 aaagtgtgggtaatgggtacaggtatgagcacttaggtgcc 39767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 4592194 - 4592250
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||||| |||||||| || ||| | ||||||||||||||||||||    
T  4592194 ttttatttcaattgtgatatttttattttcttttcatagttaaagtgcgggtaatgg 4592250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 12757932 - 12757815
Alignment:
Q  293 ttttgctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttaca 392  Q
    ||||| ||||||| |||||   |||||||||||||| |||||||||         |||||| |||||||||| ||||||| ||||||||||| ||| | |    
T  12757932 ttttgttaaatactacgattcttactattttatgagctgatttgaaaaaaatttaaccatagttttatttcatttgtgatatttttattgtcttttcata 12757833  T
Q  393 gttaaagtgcgggtaatg 410  Q
     |||||||||||||||||    
T  12757832 attaaagtgcgggtaatg 12757815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 462
Target Start/End: Complemental strand, 20937149 - 20937043
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaagg 454  Q
    |||||||||||||||||||||||||||||| ||| | | |||||||| |||||||   | | ||||||  ||||||||| ||||| |  |||||| ||||    
T  20937149 ttttatttcaattgtgatgtttttattgtcttttcataattaaagtgtgggtaataagtgcgggtatggacacttaggtacccat-aggtatggggaagg 20937051  T
Q  455 acactaaa 462  Q
    ||||||||    
T  20937050 acactaaa 20937043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 2656961 - 2656779
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| |||||   ||||||||||| ||||||||||||       ||| |||||||||||||||||| || || ||||||||||| ||| |  |||    
T  2656961 gctaaatactacgattcatactattttattagttgatttgaaattttttggatcataattttatttcaattatggtgttttttattgtcttttgatggtt 2656862  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||| |||||||  |   ||||||  |||||| || ||||||   |||||| ||||||||| ||| ||||||| |||||||    
T  2656861 aaagtgcaggtaatgtgtgtgggtatggacacttaagtacccatagggtatggggaaggacact-aaagttgttgcccacgagg 2656779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 461
Target Start/End: Complemental strand, 8753989 - 8753843
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||| ||||||||||||       ||| ||||||||||||||||||||| || ||||||||||| ||| |  |||| ||||||| |||||  |    
T  8753989 tactattttattagttgatttgaaattttgcggatcataattttatttcaattgtggtgttttttattgtcttttcatggttatagtgcggataatgact 8753890  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaa 461  Q
     |||||||   |||||| || ||||||  ||||||| |||||||||||    
T  8753889 gcaggtatagacacttaagtacccatatgatatggg-aaggacactaa 8753843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 433
Target Start/End: Original strand, 31440636 - 31440714
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggt 433  Q
    |||||||||| ||||||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  |||||||||    
T  31440636 ttttatttcatttgtgatgttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaggt 31440714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 347 - 380
Target Start/End: Original strand, 15150219 - 15150252
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttat 380  Q
    ||||||||||||||||||||||||||||||||||    
T  15150219 gaccataattttatttcaattgtgatgtttttat 15150252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 440
Target Start/End: Complemental strand, 15234473 - 15234329
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagtt 395  Q
    |||||||| ||||| ||||| |||||| |||||||||||||       ||| |||| |||| ||||||||||||||  |||||||| || ||| | || |    
T  15234473 ctaaatactacgatttgtacgattttaagagttgatttgaataattttggatcatagttttgtttcaattgtgatgattttttattttcttttcatagat 15234374  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||| ||| | | || |||| |||||  |||||||||    
T  15234373 aaagtgcgggtattgggtgcgggaatgagcacttttgtgcccata 15234329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 512
Target Start/End: Complemental strand, 30241536 - 30241377
Alignment:
Q  352 taattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaa 451  Q
    ||||||||||| | |||||||||| || ||||  ||| | |||||||||||||||||||| | |  |||||  ||||||||| ||||||   |||||  |    
T  30241536 taattttattttatttgtgatgttctttttgttttttcatagttaaagtgcgggtaatgggtgcgagtatgggcacttaggtacccatagggtatggaga 30241437  T
Q  452 aggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgggtgtggga 512  Q
    |||| ||| ||| |||||||  |||||||| |   ||||||||| |||||||||| |||||    
T  30241436 aggagact-aaagttgttgccgacgaggatccgggtattttttataaatgcgggtatggga 30241377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 4289750 - 4289659
Alignment:
Q  350 cataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||||||||| ||||| |||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  4289750 catagttttatttcaattgtgatattttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 4289659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 422
Target Start/End: Original strand, 13142572 - 13142639
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    |||||||||| ||||||||||||| ||||  ||  | |||||||||||||||||||||| | ||||||    
T  13142572 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatggatgcgggtatg 13142639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 29546035 - 29546181
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtg---atgtttttattgtccttttacag 393  Q
    ||||||||| |||||   || ||| |||||||||||||||||       ||| |||| |||||||||||| |||    | ||||||||||| ||| | ||    
T  29546035 gctaaatactacgattcatattatgttatgagttgatttgaaactttttggatcatagttttatttcaatcgtggttttttttttattgtcttttcatag 29546134  T
Q  394 ttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    ||||| |||||||||||| | | ||||||  ||||||||||||||||    
T  29546135 ttaaaatgcgggtaatgggtgcgggtatggacacttaggtgcccata 29546181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 479
Target Start/End: Original strand, 41935486 - 41935648
Alignment:
Q  318 tattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggattc 415  Q
    |||||||||||||||||||||       |||  ||| || ||||||| ||||| ||  ||||||||||| ||| | | ||||| || ||||||||| | |    
T  41935486 tattttatgagttgatttgaaattttctggattatagttgtatttcagttgtggtgcttttttattgtcttttcagaattaaactgtgggtaatgggtgc 41935585  T
Q  416 aggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
     ||||||| ||||||||||||||||   |||| | ||||||||| ||| ||||||| |||||||    
T  41935586 gggtatgagcacttaggtgcccatagggtatgaggaaggacact-aaagttgttgcccacgagg 41935648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 17154140 - 17154190
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaa 398  Q
    |||||| |||||||||||||||||| ||||||||||| ||| | |||||||    
T  17154140 accatagttttatttcaattgtgatatttttattgtcttttcatagttaaa 17154190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 423
Target Start/End: Original strand, 40507630 - 40507700
Alignment:
Q  354 attttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggattcaggtatga 423  Q
    ||||||||||||||||||| |||| ||||||| ||||| | ||||||||| | |||||||| | |||||||    
T  40507630 attttatttcaattgtgatattttttattgtctttttataattaaagtgcagataatggatacgggtatga 40507700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 38958672 - 38958725
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaag 399  Q
    ||||| || |||||||| ||||||||||||||||||||| ||| | ||||||||    
T  38958672 ggaccgtagttttattttaattgtgatgtttttattgtcttttcatagttaaag 38958725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Original strand, 32422741 - 32422797
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  32422741 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 32422797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 479
Target Start/End: Complemental strand, 35048687 - 35048604
Alignment:
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||||||||||||| | | ||||||  |||||| |||||||||  ||||||| |||| |||| ||| ||||||| |||||||    
T  35048687 taaagtgcgggtaatgggtgcgggtatgggcacttaagtgcccataggatatggggaagggcact-aaagttgttgcccacgagg 35048604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 38620496 - 38620440
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||| ||||||||||||| ||||  ||  | ||||||||||||||||||||    
T  38620496 ttttatttcatttgtgatgttttttttgtttttccatagttaaagtgcgggtaatgg 38620440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 20216374 - 20216192
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||||||||| |||||| ||| | ||      
T  20216374 gctaaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 20216275  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||||||||| || | ||||||||  |||||| |||||||||| ||||||| |||| |||| ||| ||||||| |||||||    
T  20216274 aaagtgcgggtaacgggtgcaggtatgggcacttaagtgcccataagatatggggaagggcact-aaagttgttgcccacgagg 20216192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 20235972 - 20235790
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagtt 395  Q
    ||||||||| |||||  |||||||||||| ||||||||| ||       ||| |||| |||||||||||||||||||||||| |||||| ||| | ||      
T  20235972 gctaaatactacgattcgtactattttattagttgatttaaataattttggatcatagttttatttcaattgtgatgttttttattgtcttttcatagag 20235873  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||||||||||||| || | ||||||||  |||||| |||||||||| ||||||| |||| |||| ||| ||||||| |||||||    
T  20235872 aaagtgcgggtaacgggtgcaggtatgggcacttaagtgcccataagatatggggaagggcact-aaagttgttgcccacgagg 20235790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 347 - 440
Target Start/End: Complemental strand, 6109738 - 6109645
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    ||||||| |||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||| | | ||||||| ||||||||| ||||||    
T  6109738 gaccatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcgggtaatgggtgcgggtatgagcacttaggtacccata 6109645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 859669 - 859487
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt-gtccttttacagtt 395  Q
    ||||||||| |||||   || |||||||| ||||||||||||       ||| |||| |||||||||||||||| | ||||| || ||| ||| | ||||    
T  859669 gctaaatactacgattcatattattttataagttgatttgaaattttttggatcatagttttatttcaattgtggtttttttttttgtcttttcatagtt 859570  T
Q  396 aaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    ||| |||||||||||| | | ||||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||| |||||||    
T  859569 aaaatgcgggtaatgggtgcgggtatgagcacttaggtgcccatagggtatggggaaggacact-aaagttgttgcccacgagg 859487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 454
Target Start/End: Complemental strand, 25500261 - 25500155
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg 447  Q
    |||||| |||||||||||||||||||||||||||||| ||| | | ||||||||| |||||||| | | ||||||  ||||||||| |||||||  ||||    
T  25500261 accatagttttatttcaattgtgatgtttttattgtcttttcatatttaaagtgcaggtaatgggtgcgggtatgggcacttaggtacccataaggtatg 25500162  T
Q  448 ggaaagg 454  Q
    || ||||    
T  25500161 gggaagg 25500155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 2620961 - 2621046
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||||||||||||| | ||||||||  ||||||| | ||||||    
T  2620961 ttttatttcaattgtgatgtttttattatcttttcatagttaaagtgcgggtaatgggtgcaggtatgggcacttagatacccata 2621046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 222151 - 221968
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt--gtccttttacagt 394  Q
    ||||||||| |||||   || |||||||| ||||||||||||       ||| |||| |||||||||||||||| | ||||| ||  ||| ||| | |||    
T  222151 gctaaatactacgattcatattattttataagttgatttgaaattttttggatcatagttttatttcaattgtggttttttttttttgtcttttcatagt 222052  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||| |||||||||||| | | ||||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||| |||||||    
T  222051 taaaatgcgggtaatgggtgcgggtatgagcacttaggtgcccatagggtatggggaaggacact-aaagttgttgcccacgagg 221968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 691306 - 691123
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt--gtccttttacagt 394  Q
    ||||||||| |||||   || |||||||| ||||||||||||       ||| |||| |||||||||||||||| | ||||| ||  ||| ||| | |||    
T  691306 gctaaatactacgattcatattattttataagttgatttgaaattttttggatcatagttttatttcaattgtggttttttttttttgtcttttcatagt 691207  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||| |||||||||||| | | ||||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||| |||||||    
T  691206 taaaatgcgggtaatgggtgcgggtatgagcacttaggtgcccatagggtatggggaaggacact-aaagttgttgcccacgagg 691123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 479
Target Start/End: Complemental strand, 735774 - 735591
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttatt--gtccttttacagt 394  Q
    ||||||||| |||||   || |||||||| ||||||||||||       ||| |||| |||||||||||||||| | ||||| ||  ||| ||| | |||    
T  735774 gctaaatactacgattcatattattttataagttgatttgaaattttttggatcatagttttatttcaattgtggttttttttttttgtcttttcatagt 735675  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    |||| |||||||||||| | | ||||||| ||||||||||||||||   |||||| ||||||||| ||| ||||||| |||||||    
T  735674 taaaatgcgggtaatgggtgcgggtatgagcacttaggtgcccatagggtatggggaaggacact-aaagttgttgcccacgagg 735591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 411
Target Start/End: Original strand, 19643506 - 19643570
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||| |||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  19643506 gaccatagttttttttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatgg 19643570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 43239352 - 43239235
Alignment:
Q  293 ttttgctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttaca 392  Q
    ||||| |||||||||| ||  |||||||||||||||||| ||||||       | |||||||||||| |||||||||||| |||||||| || ||| | |    
T  43239352 ttttgttaaataccacaattcgtactattttatgagttggtttgaaattttctgaaccataattttagttcaattgtgatatttttattatcttttcata 43239253  T
Q  393 gttaaagtgcgggtaatg 410  Q
    |||||||||| |||||||    
T  43239252 gttaaagtgcaggtaatg 43239235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 348 - 411
Target Start/End: Original strand, 24891411 - 24891474
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||| |||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  24891411 accatagttttatttcaattgtgatatttttattgtcttttcatagttaaagtgcgggtaatgg 24891474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 411
Target Start/End: Original strand, 26561173 - 26561284
Alignment:
Q  298 ctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaa 397  Q
    |||||||  ||||| |||||||||||||||||| |||| ||       |||||||| |||||| ||||||||||||||||||||||| ||| | ||||||    
T  26561173 ctaaatattacgatttgtactattttatgagttaatttaaaaaatt--ggaccatagttttatatcaattgtgatgtttttattgtcttttcatagttaa 26561270  T
Q  398 agtgcgggtaatgg 411  Q
    |||||| |||||||    
T  26561271 agtgcgtgtaatgg 26561284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 315 - 411
Target Start/End: Complemental strand, 43511340 - 43511244
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    ||||||||||||||||||||||||       | |||||||||||||||||||||| || ||||||||||| ||| | ||||||||||| | ||||||    
T  43511340 tactattttatgagttgatttgaaaaaatttgaaccataattttatttcaattgttatatttttattgtcttttcatagttaaagtgcagataatgg 43511244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 462
Target Start/End: Complemental strand, 7580203 - 7580058
Alignment:
Q  316 actattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatggat 413  Q
    |||||||||||||||||||||||       ||| |||| |||||||||||||||||||  ||||||||||| ||| | |||||   |||||||||||| |    
T  7580203 actattttatgagttgatttgaaattttttggatcatatttttatttcaattgtgatgcttttttattgtcttttcatagtta---tgcgggtaatgggt 7580107  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
     | ||||||  ||||||||||||||||   |||||| |||| |||||||    
T  7580106 gcgggtatgggcacttaggtgcccatagggtatggggaagggcactaaa 7580058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 2472281 - 2472366
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||| ||||||||||||||||||||| ||| | ||||||||| ||||| |||||| | ||||||  |||||| || ||||||    
T  2472281 ttttattttaattgtgatgtttttattgtcttttaatagttaaagtacgggttatggatgcgggtatgggcacttatgtacccata 2472366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 447
Target Start/End: Original strand, 15961671 - 15961764
Alignment:
Q  355 ttttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatg 447  Q
    |||||||| |||||||||||||| ||||||| ||||| | ||||| |||||||||||| | || |||||  ||| |||||||||||| ||||||    
T  15961671 ttttattttaattgtgatgttttttattgtctttttataattaaaatgcgggtaatgggtacatgtatgggcacgtaggtgcccatagaatatg 15961764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 462
Target Start/End: Complemental strand, 38020198 - 38020049
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       |||  ||| || ||||||| ||||| ||  ||||||||||| ||| | ||||||| ||||||||||||     
T  38020198 tactattttatgagttgatttgaaattttctggataatagttgtatttcagttgtggtgcttttttattgtcttttcagagttaaactgcgggtaatggg 38020099  T
Q  413 ttcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    | | ||||||  ||||||||||||||||   |||||| |||| |||||||    
T  38020098 tgcgggtatggacacttaggtgcccatagggtatggggaagggcactaaa 38020049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 499
Target Start/End: Complemental strand, 15542302 - 15542100
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt--attgtccttttacagt 394  Q
    ||||||||| || || | ||||||||||||||||| ||| ||       ||| | || |||||||| |||||||||||||||  |||| | ||||| | |    
T  15542302 gctaaatactacaatttctactattttatgagttgcttttaaaaaaattggatcttagttttattttaattgtgatgtttttttattgcctttttataat 15542203  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgaggatacaattatttttt 494  Q
    |||||||| |||||||| |   ||||||  ||||||||||||||||| ||||| | ||||||||| ||| ||||| | || |||| |||||  |||||||    
T  15542202 taaagtgcaggtaatgggtatgggtatgggcacttaggtgcccataagatatgag-aaggacact-aaagttgttacccatgagggtacaaacatttttt 15542105  T
Q  495 acaaa 499  Q
    |||||    
T  15542104 acaaa 15542100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 25419382 - 25419319
Alignment:
Q  348 accataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||| ||||||||||| ||||||||||||||| || ||| | ||||||||||| ||||||||    
T  25419382 accatagttttatttcaactgtgatgtttttattttcttttcatagttaaagtgcaggtaatgg 25419319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 45553181 - 45553100
Alignment:
Q  349 ccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccactta 430  Q
    ||||| ||||||||||||||||||||| || ||||| ||| | ||||||| ||| |||||||||| | ||||| | ||||||    
T  45553181 ccatagttttatttcaattgtgatgttctttttgtcttttcatagttaaaatgcaggtaatggatgcgggtataagcactta 45553100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 462
Target Start/End: Original strand, 37226772 - 37226880
Alignment:
Q  355 ttttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaag 453  Q
    |||||||||||| |||||||||| ||||||| ||||  | ||||||||||| |||| ||| |  |||||  ||||||||||||||||   |||||| ||     
T  37226772 ttttatttcaatcgtgatgttttttattgtctttttgtaattaaagtgcggataatagatacgagtatgggcacttaggtgcccatagggtatggggaat 37226871  T
Q  454 gacactaaa 462  Q
    |||||||||    
T  37226872 gacactaaa 37226880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 30801352 - 30801271
Alignment:
Q  358 tatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||||||||||||| |||||| ||| | ||||||||||  |||||||| | | ||||||  ||||||||| ||||||    
T  30801352 tatttcaattgtgatgttttcattgtcttttcatagttaaagtg-tggtaatgggtacgggtatggacacttaggtacccata 30801271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 314 - 465
Target Start/End: Complemental strand, 250309 - 250156
Alignment:
Q  314 gtactattttatgagttgatttgaannnnnnnggaccataattttattt-caattgtgatgt-ttttattgtccttttacagttaaagtgcgggtaatgg 411  Q
    |||||||||||||||||||||| ||       ||||||||||||||||| |||||||||| | |||||||||| ||| | ||||||||||||| ||||||    
T  250309 gtactattttatgagttgatttaaaaattttgggaccataattttattttcaattgtgatatattttattgtcttttgatagttaaagtgcggataatgg 250210  T
Q  412 attcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatt 465  Q
     | || ||||||  ||||||  ||||||||  |||||| |||||||||||||||    
T  250209 gtacatgtatgagtacttagacgcccataaggtatggggaaggacactaaaatt 250156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 347 - 410
Target Start/End: Complemental strand, 12429546 - 12429483
Alignment:
Q  347 gaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatg 410  Q
    |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||    
T  12429546 gaccataattttatttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggtaatg 12429483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 511
Target Start/End: Complemental strand, 6938161 - 6938004
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatggg 449  Q
    |||| |||| ||||||||||||||||||||||||| ||| | |||||||||||||||   || | | ||||||  ||||||||| ||||||   ||||||    
T  6938161 catagttttgtttcaattgtgatgtttttattgtcttttcatagttaaagtgcgggt---gggtgcgggtatgggcacttaggtacccatagggtatggg 6938065  T
Q  450 aaaggacactaaaatttgttgcacacgaggatacaattattttttacaaatgcgggtgtggg 511  Q
     |||| ||||||| || ||||| |||| || |||   || ||||||||||||||||| ||||    
T  6938064 gaagggcactaaagtt-gttgcccacgggggtacgggtaatttttacaaatgcgggtatggg 6938004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 462
Target Start/End: Complemental strand, 28770002 - 28769886
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaata 445  Q
    |||||||| ||||||||||||||| || ||||||||    ||| | || ||||||||||||||||| | | ||||||  ||||||||| ||||||  |||    
T  28770002 ggaccatagttttatttcaattgtaatttttttattcctttttcatagctaaagtgcgggtaatgggtgcgggtatggacacttaggtacccataggata 28769903  T
Q  446 tgggaaaggacactaaa 462  Q
    |||| || |||||||||    
T  28769902 tggggaatgacactaaa 28769886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 24447114 - 24447205
Alignment:
Q  350 cataattttatttcaattgtgatg-tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| ||||||||||||||||||| ||||||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  24447114 catagttttatttcaattgtgatgttttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 24447205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 479
Target Start/End: Original strand, 6337889 - 6338054
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg--tttttattgtccttttacagttaaagtgcgggtaatgga 412  Q
    ||||||||||||||||||||||||       ||| ||||||| ||||||| ||||| ||  ||||||||||| ||| |   ||||| |||||||||| |     
T  6337889 tactattttatgagttgatttgaaattttctggatcataattgtatttcagttgtggtgcttttttattgtcttttcagtattaaactgcgggtaattgg 6337988  T
Q  413 ttcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaaatttgttgcacacgagg 479  Q
    | | ||||||| | ||||||||||||||   |||||| |||| |||| ||| ||||||| |||||||    
T  6337989 tgcgggtatgagctcttaggtgcccatagggtatggggaagggcact-aaagttgttgcccacgagg 6338054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 1221703 - 1221794
Alignment:
Q  350 cataattttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||||||||| |||| ||||||| ||| | ||  |||||||||||||||| |   ||||||| |||||| |||||||||    
T  1221703 catagttttatttcaattgtgatattttttattgtcttttcatagagaaagtgcgggtaatgggtgggggtatgagcacttaagtgcccata 1221794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 20691583 - 20691669
Alignment:
Q  355 ttttatttcaattgtgatgtttttatt-gtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| ||||||||||||| || ||  ||| | |||||||||||||||||||| | | ||||||  ||||||||| ||||||    
T  20691583 ttttatttcatttgtgatgtttttttttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaggtacccata 20691669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 440
Target Start/End: Complemental strand, 31070910 - 31070826
Alignment:
Q  355 ttttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||||||||| || |||||||||| ||||  ||| | |||||||||||||||||||| | | ||||||  ||||||||| ||||||    
T  31070910 ttttatttcatttatgatgttttt-ttgttttttcatagttaaagtgcgggtaatgggtgcgggtatgggcacttaggtacccata 31070826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 374 - 454
Target Start/End: Complemental strand, 10499263 - 10499183
Alignment:
Q  374 tttttattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaagg 454  Q
    ||||||||||| ||| | |||||||||||| ||||||| | | | |||||  |||||||||||||||  ||||||| ||||    
T  10499263 tttttattgtcttttcatagttaaagtgcgtgtaatgggtgctgatatgagaacttaggtgcccataggatatggggaagg 10499183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 11078 - 10987
Alignment:
Q  205 ccaaggcaccactttggattccacctccactcgtagaacaaacaaggttgaattttcagcctagctaaactccaactccacgacaacctttt 296  Q
    |||||| |||||||  ||||||||| ||| || ||||||||||| ||||||||||||||||| | |||||||||| ||||||| ||||||||    
T  11078 ccaagggaccacttcagattccaccgccattcatagaacaaacacggttgaattttcagcctcgataaactccaaatccacgataacctttt 10987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 350 - 484
Target Start/End: Original strand, 221955 - 222089
Alignment:
Q  350 cataattttatttcaattgtgatgtttt-tattgtccttttacagttaaagtgcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgg 448  Q
    |||| |||||||||||| ||||| |||| ||||||| ||||| | |||||||||||||||||||| | ||||||| |||||||||| ||||||  |||||    
T  221955 catagttttatttcaatggtgatattttttattgtcgttttataattaaagtgcgggtaatggatacgggtatgagcacttaggtgtccataaggtatgg 222054  T
Q  449 gaaaggacactaaaatttgttgcacacgaggataca 484  Q
      || |||||| ||| ||||| | ||||||||||||    
T  222055 agaatgacact-aaagttgttacccacgaggataca 222089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0602 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0602
Description:

Target: scaffold0602; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 462
Target Start/End: Complemental strand, 5170 - 5009
Alignment:
Q  301 aataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagt 400  Q
    ||||| |||||  |||||||||||||||||||||||||       | ||||| |||||| |||||||||||| ||||||||||| ||| | | |||||||    
T  5170 aatactacgattcgtactattttatgagttgatttgaaaatttttgaaccatgattttagttcaattgtgatatttttattgtcttttcataattaaagt 5071  T
Q  401 gcgggtaatggattcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
    |  | |||||||| | ||||||   ||| || | ||||||| ||||| |||| |||||||||    
T  5070 gtagataatggatgcgggtatgggaactaagttacccataagatatgagaaatgacactaaa 5009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 422
Target Start/End: Original strand, 5862 - 5938
Alignment:
Q  346 ggaccataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaatggattcaggtatg 422  Q
    ||||| || |||||||||| ||||||||||||||||||| ||| | |||||||||| ||||||||| | ||||||||    
T  5862 ggaccgtagttttatttcatttgtgatgtttttattgtcttttcatagttaaagtgtgggtaatgggtgcaggtatg 5938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 462
Target Start/End: Complemental strand, 20182 - 20034
Alignment:
Q  315 tactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatggat 413  Q
    ||||||||||| ||||||||| ||       ||| |||||||||||||||||||||| |||||| |||||| ||| |  |||||| |||||||||||| |    
T  20182 tactattttattagttgatttaaaattttttggatcataattttatttcaattgtgacgtttttaattgtcttttcatggttaaaatgcgggtaatgggt 20083  T
Q  414 tcaggtatgaccacttaggtgcccataaaatatgggaaaggacactaaa 462  Q
     | ||||||  |||||| ||  |||||| ||||||| |||| |||||||    
T  20082 gcgggtatggacacttaagtatccataagatatggggaagggcactaaa 20034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 350 - 408
Target Start/End: Original strand, 72589 - 72646
Alignment:
Q  350 cataattttatttcaattgtgatgtttttattgtccttttacagttaaagtgcgggtaa 408  Q
    |||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||    
T  72589 cataattttatttcaattgtgatgtttttattgt-ctttcatagttaaagcgcgggtaa 72646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 13026 - 13137
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| ||||  | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||  || ||||||||||| ||| |  |||    
T  13026 gctaaatactacgacttatactattttattagttgatttgaaattttttggatcataattttatttcaattgtagtgttttttattgtcttttcatggtt 13125  T
Q  396 aaagtgcgggta 407  Q
    ||||||||||||    
T  13126 aaagtgcgggta 13137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 407
Target Start/End: Original strand, 21861 - 21972
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtgatg-tttttattgtccttttacagtt 395  Q
    ||||||||| ||||  | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||  || ||||||||||| ||| |  |||    
T  21861 gctaaatactacgacttatactattttattagttgatttgaaattttttggatcataattttatttcaattgtagtgttttttattgtcttttcatggtt 21960  T
Q  396 aaagtgcgggta 407  Q
    ||||||||||||    
T  21961 aaagtgcgggta 21972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 297 - 440
Target Start/End: Original strand, 26066 - 26211
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgtg--atgtttttattgtccttttacagt 394  Q
    ||||||||| |||||   || |||||||||||||||||||||       ||| |||| ||||||||||||||||   | ||||||||||| ||| | |||    
T  26066 gctaaatactacgattcatattattttatgagttgatttgaaattttttggatcatagttttatttcaattgtggcttttttttattgtcttttcatagt 26165  T
Q  395 taaagtgcgggtaatggattcaggtatgaccacttaggtgcccata 440  Q
    |||| |||||||||||  | | | ||||| |||||||||| |||||    
T  26166 taaaatgcgggtaatgagtgcggttatgagcacttaggtgaccata 26211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0938 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Complemental strand, 633 - 561
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgt 369  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||    
T  633 gctaaatactacgatttatactattttattagttgatttgaaattttttggatcataattttatttcaattgt 561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 23819 - 23891
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgt 369  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||    
T  23819 gctaaatactacgatttatactattttattagttgatttgaaattttttggatcataattttatttcaattgt 23891  T

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Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 369
Target Start/End: Original strand, 33987 - 34059
Alignment:
Q  297 gctaaataccacgatgtgtactattttatgagttgatttgaannnnnnnggaccataattttatttcaattgt 369  Q
    ||||||||| ||||| | ||||||||||| ||||||||||||       ||| ||||||||||||||||||||    
T  33987 gctaaatactacgatttatactattttattagttgatttgaaattttttggatcataattttatttcaattgt 34059  T

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Target: scaffold0102 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 16563 - 16503
Alignment:
Q  351 ataattttatttcaattgtgatgttttt-attgtccttttacagttaaagtgcgggtaatg 410  Q
    ||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| || ||||||    
T  16563 ataattttatttcaattctgatattttttattgtctttttatagttaaagtacgagtaatg 16503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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