View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_low_43 (Length: 229)

Name: NF17523_low_43
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17523_low_43
NF17523_low_43
[»] scaffold0349 (1 HSPs)
scaffold0349 (1-211)||(15932-16143)
[»] chr6 (39 HSPs)
chr6 (1-211)||(27715802-27716013)
chr6 (1-211)||(27608422-27608633)
chr6 (1-211)||(27681607-27681818)
chr6 (43-211)||(27695935-27696104)
chr6 (2-203)||(26805159-26805361)
chr6 (107-207)||(26826543-26826643)
chr6 (1-211)||(27674876-27675087)
chr6 (43-211)||(25547627-25547799)
chr6 (113-211)||(28789035-28789133)
chr6 (1-211)||(28795059-28795270)
chr6 (43-211)||(25513525-25513694)
chr6 (43-211)||(26145647-26145816)
chr6 (43-211)||(25485640-25485809)
chr6 (102-211)||(26658632-26658741)
chr6 (102-211)||(26764603-26764712)
chr6 (102-211)||(26638052-26638161)
chr6 (102-211)||(26744018-26744127)
chr6 (26-210)||(26886760-26886945)
chr6 (102-211)||(26980060-26980168)
chr6 (1-84)||(27662674-27662757)
chr6 (124-211)||(27703643-27703730)
chr6 (102-211)||(25076543-25076652)
chr6 (43-211)||(27602067-27602236)
chr6 (1-211)||(26649126-26649337)
chr6 (1-211)||(26755094-26755305)
chr6 (101-211)||(26961761-26961871)
chr6 (154-211)||(25582354-25582411)
chr6 (154-211)||(26058566-26058623)
chr6 (154-211)||(26078536-26078593)
chr6 (38-211)||(26625779-26625956)
chr6 (38-211)||(26731756-26731933)
chr6 (159-211)||(26876224-26876276)
chr6 (25-72)||(26876364-26876411)
chr6 (29-77)||(31287364-31287412)
chr6 (1-83)||(28789164-28789246)
chr6 (43-72)||(26961901-26961930)
chr6 (43-72)||(27590470-27590499)
chr6 (107-211)||(31287226-31287333)
chr6 (100-148)||(26952331-26952379)
[»] chr8 (2 HSPs)
chr8 (1-211)||(29271141-29271352)
chr8 (1-211)||(22023926-22024137)
[»] chr1 (6 HSPs)
chr1 (1-211)||(265633-265844)
chr1 (25-73)||(26138789-26138837)
chr1 (44-83)||(28124969-28125008)
chr1 (102-177)||(28130059-28130134)
chr1 (107-211)||(26138650-26138754)
chr1 (107-183)||(28125033-28125109)
[»] scaffold0277 (3 HSPs)
scaffold0277 (2-211)||(1991-2201)
scaffold0277 (113-211)||(11066-11164)
scaffold0277 (1-83)||(10953-11035)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-211)||(10185-10396)
[»] chr4 (8 HSPs)
chr4 (107-211)||(18696857-18696961)
chr4 (107-211)||(18721528-18721632)
chr4 (107-211)||(18677014-18677118)
chr4 (107-211)||(18728950-18729054)
chr4 (107-211)||(18682171-18682277)
chr4 (107-210)||(18687063-18687166)
chr4 (107-211)||(18726447-18726553)
chr4 (107-211)||(18652932-18653036)


Alignment Details
Target: scaffold0349 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16143 - 15932
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||||| ||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  16143 ggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctcaagggactcgcagtaccccacattaatttca 16044  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||| ||| | |||||| |||| |||||| |||||||||||||||||||| | ||     
T  16043 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaactcttc 15944  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  15943 ggagacattcat 15932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 6e-64; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27715802 - 27716013
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||||| ||||  || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||      
T  27715802 ggaactcaatgattgacatccttgtgcattaatctcttttagatttggtggaatccctctaatttcctcaagggactcgcagtaccccacattaatttca 27715901  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||||||||||| ||| ||| | |||||| |||| |||||| |||||||||||||||||||| | ||     
T  27715902 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatataataagtttagagatgtcatattaacacaccacttgagaactcttc 27716001  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27716002 ggagacattcat 27716013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27608422 - 27608633
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| ||| |   ||||||||||  ||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||  |    
T  27608422 ggaactcaatgatttgcattcgcttgcagaaagccatttaagatttggtggaatccctctaatttcctcaagggactcgcagtccctcacagtaattaga 27608521  T
Q  101 -caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     ||||||||||| |||||||||| |||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||    
T  27608522 acaagatggtgacattcactaaggcactcaggaagaattttgaaattgctatatgataagtctagacatgtcacattaacaaaccacttgagaagtattg 27608621  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27608622 ggagacattcat 27608633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 27681818 - 27681607
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||||||   |   ||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||| |    
T  27681818 ggaactcaatgatttacaatatctagcacaaagctcttttagatttggtggaatccctctaatttcctcaagagactcgcagcacatcacattaatttca 27681719  T
Q  101 -caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     ||||||||||| |||||| ||| |||||||||||||||||||| ||| ||  |||||||||||||| ||||| |||||||||||||||||||| |||||    
T  27681718 acaagatggtgacattcacgaaggcactcaggaagaattttgaaattgctaaatgataagtctagatgtgtcatattaacacaccacttgagaactattg 27681619  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  27681618 ggagacattcat 27681607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 27695935 - 27696104
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttt-acaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||  ||||||||| ||||| ||||||||||||    
T  27695935 atttggtggaatccctctaatttcctcaagggacttgcagtacctcacaataatttccacaagatggtgactttcactaaggcactctggaagaattttg 27696034  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || | | ||| |||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  27696035 aaatcgctatatgataaatctagatatgtcatattaacacaccacttgagaagtattgggagacattcat 27696104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 203
Target Start/End: Complemental strand, 26805361 - 26805159
Alignment:
Q  2 gaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-tttta 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||   ||||||   || || ||  |       
T  26805361 gaactcaatgatttacatccttctgcagaaagctcttttagattcggtggaatccctctaatttcctcaagagatgtgcagtaagacaaatcaagatgct 26805262  T
Q  101 caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
     |||||||||| |||||||||| |||||||||||||||||||| ||||| | |||||| ||||| | |   ||||||||||||||||| |||| |||| |    
T  26805261 taagatggtgacattcactaagacactcaggaagaattttgaaattgttgtttgataactctagttcttcaacattaacacaccacttaagaactatttg 26805162  T
Q  201 gag 203  Q
    |||    
T  26805161 gag 26805159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 207
Target Start/End: Complemental strand, 26826643 - 26826543
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    |||||| ||||||||| |||||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  26826643 ggtgaagttcactaaggcactcaggaataattttgaatttgttccctgataagtctagagatgtcacattaacacaccacttgagaaatatcgggagaca 26826544  T
Q  207 t 207  Q
    |    
T  26826543 t 26826543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 27674876 - 27675087
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    |||||||||||||||||||   | ||| ||||||||||| | |||||||||||||||||||||||||||||| ||   ||||||   || |  ||  |      
T  27674876 ggaactcaatgatttacattgatatgcggaaagctctttaagatttggtggaatccctctaatttcctcaagagaagagcagtaatgcaaaccaagatgc 27674975  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||  ||  |||||||||||||||||| |||| ||||     
T  27674976 ttaagatggtgacattcactaaggcactcaggaagaattttgaaattgttatgtgataagtctagcaattccacattaacacaccacttaagaactattt 27675075  T
Q  200 ggagacattcat 211  Q
    ||||| ||||||    
T  27675076 ggagatattcat 27675087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25547799 - 25547627
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-tacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||||||||||||||||||||||  | | ||||| | ||| || || || |  |||||||||| |||| ||||| ||||||||||||||| ||    
T  25547799 atttggtggaatccctctaatttcctcaagaaaattgcagttcttcaaataaagttgtttaagatggtgacattcgctaaggcactcaggaagaattgtg 25547700  T
Q  142 aattt---gttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||   ||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25547699 aaattatcgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25547627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 211
Target Start/End: Complemental strand, 28789133 - 28789035
Alignment:
Q  113 attcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||| || |||||| |||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28789133 attcactaaggcactcaggaataagtttgaaattgttccatgataagtctagatatgtcacataaacacaccacttgagaaatattgggagacattcat 28789035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28795270 - 28795059
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| |||||   ||||||||||  ||  | ||||||||||||||||||||||||||| || |||| |||||    ||   |||  |||    
T  28795270 ggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtggaatccctctaatttcctcgagagacttgcagttatccaatctaaggtta 28795171  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||| ||| | |||||||||| |||||||||| || |||||| |||||   ||||||||||||  || ||||||||||||||||||||||||||||||    
T  28795170 ttaagaaggtaacattcactaaggcactcaggaataaatttgaaattgttccatgataagtctagcaatttcacattaacacaccacttgagaaatattg 28795071  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  28795070 ggagacattcat 28795059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25513694 - 25513525
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-ttttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | || |||  || ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  25513694 atttggtggaatccctctaatttcctcaagagccttgcaaaacttcaaataaagatgcttaagacggtgatattcaccaaggcactcgggaagaattgtg 25513595  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25513594 aaattgttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25513525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 26145816 - 26145647
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac-aagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | ||||||  || ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  26145816 atttggtggaatccctctaatttcctcaagagcctcgcaaaacttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtg 26145717  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || | ||| || |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26145716 aaatagttctccgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26145647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 25485809 - 25485640
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaa-ttttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    |||||||||||||||||||||||||||||| | || ||| | | ||| || ||  |    |||| ||||| |||||| ||| ||||| ||||||||| ||    
T  25485809 atttggtggaatccctctaatttcctcaagagccttgcacttcttcaaataaagatgcttaagacggtgacattcaccaaggcactcgggaagaattgtg 25485710  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||||| |  |||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25485709 aaattgttctgcgataagtctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26658741 - 26658632
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| |||||||||| ||||| || ||||||||||| ||||| | |||||||| ||||||| |||||||||||||||||||||||| ||||||     
T  26658741 aagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattgga 26658642  T
Q  202 agacattcat 211  Q
    ||||| ||||    
T  26658641 agacagtcat 26658632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26764712 - 26764603
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| |||||||||| ||||| || ||||||||||| ||||| | |||||||| ||||||| |||||||||||||||||||||||| ||||||     
T  26764712 aagaaggtgacattcactaaggcactcgggtagaattttgaaattgttctttgataagtttagatatttcacattaacacaccacttgagaagtattgga 26764613  T
Q  202 agacattcat 211  Q
    ||||| ||||    
T  26764612 agacagtcat 26764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26638161 - 26638052
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| || ||||||| |||||||||||||||||||| |||||| | ||||||| ||   || |||||||| ||||||||||||||| |||||||    
T  26638161 aagaaggtgacatacactaaggcactcaggaagaattttgaaattgttaccagataagtataacaatttcacattagcacaccacttgagaagtattggg 26638062  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26638061 agacattcat 26638052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26744127 - 26744018
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||| ||||| || ||||||| |||||||||||||||||||| |||||| | ||||||| ||   || |||||||| ||||||||||||||| |||||||    
T  26744127 aagaaggtgacatacactaaggcactcaggaagaattttgaaattgttaccagataagtataacaatttcacattagcacaccacttgagaagtattggg 26744028  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26744027 agacattcat 26744018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 210
Target Start/End: Complemental strand, 26886945 - 26886760
Alignment:
Q  26 gcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac-aagatggtgaaattcactaagcc 124  Q
    |||||||| ||||| | ||||||||| |||||||||||||||||||| |||| ||| |   |||  | || | | | |||| ||||| ||||  |||| |    
T  26886945 gcagaaaggtctttaagatttggtggtatccctctaatttcctcaagagacttgcaatgattcaattcaagtatcctaagaaggtgacattccttaaggc 26886846  T
Q  125 actcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattca 210  Q
    |||| |||||||||||||| ||||| | |||||||||||||| | ||||||||||| ||||||||||||  ||||| |||||||||    
T  26886845 actcgggaagaattttgaaattgttctttgataagtctagatgtttcacattaacaaaccacttgagaagcattggaagacattca 26886760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 26980168 - 26980060
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    |||||||||| ||||| |||| |||||||| ||||||||||| ||||| | |  ||||| || |||||||||||||||| |||||||||||| |||||||    
T  26980168 aagatggtgacattcattaaggcactcaggtagaattttgaaattgttgt-tcttaagtttaaatatgtcacattaacaaaccacttgagaagtattggg 26980070  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  26980069 agacattcat 26980060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27662674 - 27662757
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagta 84  Q
    |||||||||||||||||||||||||||| |||| | | ||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  27662674 ggaactcaatgatttacatccttctgcataaagatttgttagattgggtggaatccctctaatttcctcaagagactcacagta 27662757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 124 - 211
Target Start/End: Original strand, 27703643 - 27703730
Alignment:
Q  124 cactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||||||||||||| ||||| |    |||||||||| |||||| |||||||||||||||||||| |||||||||||||||||    
T  27703643 cactcaggaagaattttgaaattgttgtacattaagtctagagatgtcatattaacacaccacttgagaagtattgggagacattcat 27703730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 102 - 211
Target Start/End: Complemental strand, 25076652 - 25076543
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattggg 201  Q
    ||||||| || |||||||||| ||||| |||||||||||||| |  || |  || |||||||||||| ||||||||||| |||||||||||| ||||||     
T  25076652 aagatggcgacattcactaaggcactcgggaagaattttgaaatcattgttagacaagtctagatatttcacattaacaaaccacttgagaagtattgga 25076553  T
Q  202 agacattcat 211  Q
    ||||||||||    
T  25076552 agacattcat 25076543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 27602067 - 27602236
Alignment:
Q  43 atttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaat-tttacaagatggtgaaattcactaagccactcaggaagaattttg 141  Q
    ||||||||||| ||||||||||||||||||  ||| ||||     ||||| ||| |||  |||| ||||| |||||||||| ||||||||||||||||||    
T  27602067 atttggtggaaaccctctaatttcctcaagaaacttgcagccatccacataaatgtttttaagaaggtgacattcactaaggcactcaggaagaattttg 27602166  T
Q  142 aatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    || ||| | || |||||| |||||| |  |||||||||||||||| | |||| |||| ||||| ||||||    
T  27602167 aaattgctctcagataagactagattttccacattaacacaccacattagaagtattcggagaaattcat 27602236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26649337 - 26649126
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||    ||||||||||  ||| | ||||||||||||||| |||||||||||||| ||    |||     |||  ||||||      
T  26649337 ggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctcaagagaggtacagccgtccacgataatttca 26649238  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| ||||||||||  |||| |||||||||||||| ||||| | || |||| |||||| | ||| |||||||||||| ||||||| ||||     
T  26649237 acaagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttgctaagactagatttttcagattaacacaccatttgagaattatta 26649138  T
Q  200 ggagacattcat 211  Q
    |||||| |||||    
T  26649137 ggagactttcat 26649126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 26755305 - 26755094
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattt-t 99  Q
    |||||||||||||| |||||    ||||||||||  ||| | ||||||||||||||| |||||||||||||| ||    |||     |||  ||||||      
T  26755305 ggaactcaatgattcacatctcaatgcagaaagccatttaagatttggtggaatccccctaatttcctcaagagaggtacagccgtccacgataatttca 26755206  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| ||||||||||  |||| |||||||||||||| ||||| | || |||| |||||| | ||| |||||||||||| ||||||| ||||     
T  26755205 acaagatggtgacattcactaaggaactcgggaagaattttgaaattgttctttgctaagactagatttttcagattaacacaccatttgagaattatta 26755106  T
Q  200 ggagacattcat 211  Q
    |||||| |||||    
T  26755105 ggagactttcat 26755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 211
Target Start/End: Complemental strand, 26961871 - 26961761
Alignment:
Q  101 caagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
    ||||| ||||| |||||||||| ||||| |||||||||||||| ||||| |    ||| | |||| |||||||||||||| || ||||||||| ||||||    
T  26961871 caagacggtgacattcactaaggcactcgggaagaattttgaaattgttcttcattaattttagagatgtcacattaacaaacaacttgagaagtattgg 26961772  T
Q  201 gagacattcat 211  Q
    |||||||||||    
T  26961771 gagacattcat 26961761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 25582411 - 25582354
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  25582411 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 25582354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 26058623 - 26058566
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26058623 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26058566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 211
Target Start/End: Complemental strand, 26078593 - 26078536
Alignment:
Q  154 gataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    ||||| |||||| |||||||||||||| |||||||||||| |||||||||||||||||    
T  26078593 gataaatctagaaatgtcacattaacaaaccacttgagaagtattgggagacattcat 26078536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 26625956 - 26625779
Alignment:
Q  38 tttatatttggtggaatccctctaatttcctcaagggactcgcagtacctc-acattaattttac-aagatggtgaaattcactaagccactcaggaaga 135  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  | || | |||||   | | |||| ||||| ||||| |||| || |||||||||    
T  26625956 tttagatttggtggaatccctctaatttcctcaagagactcgcagc-catctaaattaaggatcctaagaaggtgacattcattaaggcattcaggaaga 26625858  T
Q  136 attttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||    |   || || ||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||    
T  26625857 attttgataccgacgttctccgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcat 26625779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 26731933 - 26731756
Alignment:
Q  38 tttatatttggtggaatccctctaatttcctcaagggactcgcagtacctc-acattaattttac-aagatggtgaaattcactaagccactcaggaaga 135  Q
    |||| |||||||||||||||||||||||||||||| |||||||||  | || | |||||   | | |||| ||||| ||||| |||| || |||||||||    
T  26731933 tttagatttggtggaatccctctaatttcctcaagagactcgcagc-catctaaattaaggatcctaagaaggtgacattcattaaggcattcaggaaga 26731835  T
Q  136 attttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||    |   || || ||||||||||||| | ||||||||||| |||||||||||| |||||||||| ||||||    
T  26731834 attttgataccgacgttctccgataagtctagatgtttcacattaacaaaccacttgagaattattgggagatattcat 26731756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 26876276 - 26876224
Alignment:
Q  159 gtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||||||||||||||||| || ||||||||||||||    
T  26876276 gtctagatatctcacattaacacaccacttgagaagtagtgggagacattcat 26876224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 26876411 - 26876364
Alignment:
Q  25 tgcagaaagctcttttatatttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||  || |||||||||||||||||||||||||||||||||    
T  26876411 tgcagaaagcctttctatatttggtggaatccctctaatttcctcaag 26876364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 31287412 - 31287364
Alignment:
Q  29 gaaagctcttttatatttggtggaatccctctaatttcctcaagggact 77  Q
    ||||||||||  | |||||||||||||||||||||||||||||| ||||    
T  31287412 gaaagctcttcaagatttggtggaatccctctaatttcctcaagagact 31287364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 28789246 - 28789164
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||| |||||   ||||||||||  |   | ||||||||||||||||||||||||||| || |||| |||||    
T  28789246 ggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttcctccagagacttgcagt 28789164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 26961930 - 26961901
Alignment:
Q  43 atttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||||||||||||||||||||||    
T  26961930 atttggtggaatccctctaatttcctcaag 26961901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 27590470 - 27590499
Alignment:
Q  43 atttggtggaatccctctaatttcctcaag 72  Q
    ||||||||||||||||||||||||||||||    
T  27590470 atttggtggaatccctctaatttcctcaag 27590499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 31287333 - 31287226
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttg---ttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggag 203  Q
    ||||| ||||| |||| ||||| |||||||| ||||| |||   ||||  |||||||||||   | ||||||||||| |||||||||||| |||||| |     
T  31287333 ggtgacattcattaagacactcgggaagaatattgaaattgaagttatgcgataagtctagccttttcacattaacaaaccacttgagaagtattggtaa 31287234  T
Q  204 acattcat 211  Q
    ||||||||    
T  31287233 acattcat 31287226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 26952379 - 26952331
Alignment:
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgt 148  Q
    |||||||||||  |||||||||| ||||| |||||||||||||| ||||    
T  26952379 acaagatggtggcattcactaaggcactcgggaagaattttgaaattgt 26952331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29271141 - 29271352
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    |||||||||||||| |||   |||  ||||||||||||||| |||||||||||||||||||||||||| ||| || | ||||   |||| ||||||||||    
T  29271141 ggaactcaatgattcacaatattcaacagaaagctcttttagatttggtggaatccctctaatttccttaagagaatggcagccactcatattaatttta 29271240  T
Q  101 caa-gatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
     || ||||| || |||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||||||||| |||||    
T  29271241 taaagatggagacattcactaaggcactcaggaagaattttgaaatagttaaatgataagtctagatatgtcacattaacacaccacttgagaagtattg 29271340  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  29271341 ggagacattcat 29271352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 22024137 - 22023926
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| ||| ||  ||||||||||  ||  | |||||||||||||||||||||||||||||  || | ||||     || |||||         
T  22024137 ggaactcaatgatttgcattctattgcagaaagcctttcaagatttggtggaatccctctaatttcctcaacagatttgcagcgatccaaattaagaacc 22024038  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    | || | ||||| ||||| |||| ||||| |||||||||||||| |||||||  |||||||||||      || ||||||||| ||||||||||||||||    
T  22024037 caaacaaggtgacattcattaaggcactcgggaagaattttgaaattgttattcgataagtctagcgtaaccatattaacacaacacttgagaaatattg 22023938  T
Q  200 ggagacattcat 211  Q
    |||| |||||||    
T  22023937 ggaggcattcat 22023926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 265633 - 265844
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttt- 99  Q
    |||||||||||| || ||| | |  ||| |||||||||| | ||||||||||||||||||||||||||||||  ||| |||||| ||||| ||||||||     
T  265633 ggaactcaatgagttgcattcatacgcaaaaagctctttaagatttggtggaatccctctaatttcctcaagatacttgcagtaactcacgttaatttta 265732  T
Q  100 acaagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
    |||||||||||| |||||||||| |||||||||||| ||||||| ||| | |    ||||| ||||||| |||||||||||||||||||||||| |||||    
T  265733 acaagatggtgacattcactaaggcactcaggaagagttttgaacttgctcttcattaagtttagatatatcacattaacacaccacttgagaagtattg 265832  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  265833 ggagacattcat 265844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 26138837 - 26138789
Alignment:
Q  25 tgcagaaagctcttttatatttggtggaatccctctaatttcctcaagg 73  Q
    |||||||| || ||||| |||||||||||||||| ||||||||||||||    
T  26138837 tgcagaaaacttttttagatttggtggaatccctttaatttcctcaagg 26138789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 28124969 - 28125008
Alignment:
Q  44 tttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  28124969 tttggtggaatccctctaatttcctcaagagacttgcagt 28125008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 28130059 - 28130134
Alignment:
Q  102 aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta 177  Q
    |||||||||| ||||| |||| ||||| |||| || ||| |  |||||||||||||||| ||||||| ||||||||    
T  28130059 aagatggtgacattcattaagacactccggaataacttttatattgttatctgataagtatagatatttcacatta 28130134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 26138754 - 26138650
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| ||||||||||||||||| || |  ||| | | ||||| ||||||  |||||||| ||||| || |||||| |||||| | |||    
T  26138754 ggtgacattcattaaggcactcaggaagaattttaaaatcattacccggtaagtatagatacttcacattagcacacaacctgagaattattggaacaca 26138655  T
Q  207 ttcat 211  Q
    |||||    
T  26138654 ttcat 26138650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 28125033 - 28125109
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacac 183  Q
    ||||| |||||||||| ||||| ||||||||||| |  || || |||||||||  |||| ||||||||||| |||||    
T  28125033 ggtgacattcactaagacactcgggaagaattttcatatttttttctgataagcgtagacatgtcacattagcacac 28125109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 1991 - 2201
Alignment:
Q  2 gaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaattttac 101  Q
    |||||||||||||| |||||   ||||||||||  ||  | ||||||||||||||||||||||||||| || |||| |||||    ||   |||   ||     
T  1991 gaactcaatgatttgcatcccattgcagaaagcatttcaagatttggtggaatccctctaatttcctccagagacttgcagttatccaatataaggatat 2090  T
Q  102 -aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgg 200  Q
     |||| ||||| |||||||||| |||||||||| || |||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2091 taagaaggtgacattcactaaggcactcaggaataagtttgaaattgttatatgataagtctagagatgtcacattaacacaccacttgagaaatattgg 2190  T
Q  201 gagacattcat 211  Q
    |||||||||||    
T  2191 gagacattcat 2201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 211
Target Start/End: Original strand, 11066 - 11164
Alignment:
Q  113 attcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagacattcat 211  Q
    |||||||||| |||||||||| || |||||| |||||   ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11066 attcactaaggcactcaggaataagtttgaaattgttccatgataagtctagatatgtcacataaacacaccacttgagaaatattgggagacattcat 11164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 10953 - 11035
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagt 83  Q
    ||||||||||||||| |||||   ||||||||||  |   | ||||||||||||||||||||||||||| || |||| |||||    
T  10953 ggaactcaatgatttgcatccgattgcagaaagccttgcaagatttggtggaatccctctaatttcctccagagacttgcagt 11035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 10396 - 10185
Alignment:
Q  1 ggaactcaatgatttacatccttctgcagaaagctcttttatatttggtggaatccctctaatttcctcaagggactcgcagtacctcacattaatttta 100  Q
    ||||||||||||||| |||||   ||||||||||  ||  | |||||||| |||||||||||||||||| || |||| |||||    ||   |||  |||    
T  10396 ggaactcaatgatttgcatcccattgcagaaagcctttcaagatttggtgcaatccctctaatttcctccagagacttgcagttatccaatataaggtta 10297  T
Q  101 c-aagatggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattg 199  Q
      |||| ||||| |||||||||| |||||||||| || |||||| |||||   ||||||||||||  || ||||||||||||||||||||||||||||||    
T  10296 ttaagaaggtgacattcactaaggcactcaggaataagtttgaaattgttccttgataagtctagcaatttcacattaacacaccacttgagaaatattg 10197  T
Q  200 ggagacattcat 211  Q
    ||||||||||||    
T  10196 ggagacattcat 10185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18696857 - 18696961
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  |   ||||||| ||||||| |||||||||||||| ||||||||| |||| |||||||    
T  18696857 ggtgacattcactaaggcactcgggaagaattttgaatttgccaagggataagtttagatatttcacattaacacacgacttgagaactatttggagaca 18696956  T
Q  207 ttcat 211  Q
    |||||    
T  18696957 ttcat 18696961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18721528 - 18721632
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| |||||||||||||||||||| | |  |   |||||||||||| || |||||||||||||| ||||||||| |||| |||||||    
T  18721528 ggtgacattcattaaggcactcaggaagaattttgaaatagccaaaggataagtctagaaatttcacattaacacacgacttgagaactatttggagaca 18721627  T
Q  207 ttcat 211  Q
    |||||    
T  18721628 ttcat 18721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18677014 - 18677118
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| |||| ||||| |||||||||||||| |||  |   |||||||||||| || |||||||||||||| ||||||||| |||| ||||||     
T  18677014 ggtgacattcattaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacaacttgagaactatttggagacc 18677113  T
Q  207 ttcat 211  Q
    |||||    
T  18677114 ttcat 18677118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18728950 - 18729054
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| |||||||||||||||||||| |    |   | |||||||||| || ||||||||| |||||||||||||| |||| |||||||    
T  18728950 ggtgacattcactaaggcactcaggaagaattttgaactgaccaaaggttaagtctagaaatttcacattaatacaccacttgagaactatttggagaca 18729049  T
Q  207 ttcat 211  Q
    |||||    
T  18729050 ttcat 18729054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18682171 - 18682277
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta--acacaccacttgagaaatattgggaga 204  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   |||||||||||| || ||||||||  |||||| ||||||||| |||| |||||    
T  18682171 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacgacttgagaactatttggaga 18682270  T
Q  205 cattcat 211  Q
    |||||||    
T  18682271 cattcat 18682277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 18687063 - 18687166
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   ||||||| |||| || |||||||||||||| |||| |||| |||| |||||||    
T  18687063 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtttagaaatttcacattaacacacgacttaagaactatttggagaca 18687162  T
Q  207 ttca 210  Q
    ||||    
T  18687163 ttca 18687166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18726447 - 18726553
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacatta--acacaccacttgagaaatattgggaga 204  Q
    ||||| |||||||||| ||||| |||||||||||||| |||  |   |||||||||||| || ||||||||  |||||| ||||||||| |||| |||||    
T  18726447 ggtgacattcactaaggcactcgggaagaattttgaaattgccaaaggataagtctagaaatttcacattaacacacacaacttgagaactatttggaga 18726546  T
Q  205 cattcat 211  Q
    |||||||    
T  18726547 cattcat 18726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 18652932 - 18653036
Alignment:
Q  107 ggtgaaattcactaagccactcaggaagaattttgaatttgttatctgataagtctagatatgtcacattaacacaccacttgagaaatattgggagaca 206  Q
    ||||| ||||| ||||  |||| |||||||||||||| |||  |   ||||||  |||| || |||||||||||||| ||||||||| |||| |||||||    
T  18652932 ggtgacattcattaaggtactcgggaagaattttgaaattgcaacgggataagcttagaaatttcacattaacacacgacttgagaactatttggagaca 18653031  T
Q  207 ttcat 211  Q
    |||||    
T  18653032 ttcat 18653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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