View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17523_low_48 (Length: 211)

Name: NF17523_low_48

Description: NF17523

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17523_low_48

[»] chr1 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 128; E-Value: 2e-66

Query Start/End: Original strand, 11 - 190

Target Start/End: Original strand, 19286310 - 19286489

Alignment:

Q	11	ccctaacaatgtttttaacattcacacaggatagcatcccactatcttacaacaattcccaccaaacaatagtgagaaactttttcacaaaagaactaaa	110	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|
T	19286310	ccctagcaatgtttctaacattcacacaagatagcatcccactatcttacaacaattgccaccaaacaatagcgagaaacttttttagaaaagaattaaa	19286409	T

Q	111	taataacaaatgtatggttgtttatcttaatcaatatcaatttaataaagtgaacttattgctgagaaaacctttcttta	190	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	19286410	taataataaatgtatggctgtttatcttaattaatatcactttaataaagtgaacttattgttgagaaaacctttcttta	19286489	T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 30; E-Value: 0.00000007

Query Start/End: Original strand, 112 - 149

Target Start/End: Original strand, 25535944 - 25535981

Alignment:

Q	112	aataacaaatgtatggttgtttatcttaatcaatatca	149	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	25535944	aataacaaatgtatggttgtatatctttatcaatatca	25535981	T

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