View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_5 (Length: 509)
Name: NF17523_low_5
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Original strand, 46176091 - 46176574
Alignment:
| Q |
18 |
actagggggattgaagtgggaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgtggcttatttatagtagcaagg |
117 |
Q |
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| T |
46176091 |
actagggggattgaagtggcaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgtggcttatttatagtagcaagg |
46176190 |
T |
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| Q |
118 |
taaggaagacttgatgatagaagcaggggtcaacccaaacaagtacaaattcgtgattttcctcgaaatttaagcagcagaaattaaagacnnnnnnnnn |
217 |
Q |
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| T |
46176191 |
taaggaagacttgatgatagaagcaggggtcaacccaaacaagtacaaattcgtgattttcctcgaaatttaagcagcagaaattaaagacttttttttt |
46176290 |
T |
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| Q |
218 |
naggggagaaattaaagacttgtccaagctaagtttatttttcatataattttaatatttagtttttgactcttaaaaaagtagatctaaattaccaact |
317 |
Q |
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| T |
46176291 |
taggggagaaattaaagacttgtccaagctaagtttatttttcatataattttaatatttagtttttgactcttaaaaaagtagatctaaattaccaact |
46176390 |
T |
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| Q |
318 |
actatatttaggagaaaaagtaag-nnnnnnnngtaaggaaactttccaagaaggcatcatgttgcttcaacgttggaatccccaaacatttttgttggc |
416 |
Q |
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| T |
46176391 |
actatatttaggagaaaaagtaagaaaaaaaaagtaaggaaactttccaagaaggcatcatgttgctttaacgttggaatccccaaacatttttgttggc |
46176490 |
T |
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| Q |
417 |
gttggtatgactttcaggctacatgtgttacactggtccatttgtttccgcgtctgccccatacatgtgtcacagaagtataat |
500 |
Q |
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| T |
46176491 |
gttggtatgactttcaggctacatgtgttacactggtccatttgtttccgcgtcgcccccatacatgtgtcacacaagtataat |
46176574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 45044014 - 45044201
Alignment:
| Q |
18 |
actagggggattgaagtgggaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgtggcttatttatagtagcaagg |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
45044014 |
actagggggattgaagtggtaataggaagagataattttcaatttgaagttaagttatgaagtgaagatgataatttgagacttatttatagt---aagg |
45044110 |
T |
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| Q |
118 |
taaggaagacttgatgatagaagcaggggtcaacccaaacaagtacaaattcgtgattttcctcgaaatttaagcagcagaaattaaagac |
208 |
Q |
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| T |
45044111 |
taaggaagacttgatgatcgaagcaggggtcaacccaaaatagtacaaattcgtggttttcctcgaaatttaagcagcagaaataaaagac |
45044201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 248 - 326
Target Start/End: Original strand, 45044870 - 45044948
Alignment:
| Q |
248 |
aagtttatttttcatataattttaatatttagtttttgactcttaaaaaagtagatctaaattaccaactactatattt |
326 |
Q |
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| T |
45044870 |
aagtttatttttcatataattttaatatttagtttttgactcttaaaatagtatatctaaattaccaactactatattt |
45044948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 45036624 - 45036708
Alignment:
| Q |
53 |
ttttcaatttgaagttaagttatgaagtgaagatgataatttgtggcttatttatagtagcaaggtaaggaagacttgatgataga |
138 |
Q |
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| T |
45036624 |
ttttgaatttgaaattaagttatgaaatgaagatgataatttgatgattatttatagta-taaggtatggaagagttgatgataga |
45036708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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