View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17523_low_6 (Length: 494)
Name: NF17523_low_6
Description: NF17523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17523_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Complemental strand, 294982 - 294525
Alignment:
| Q |
20 |
ttaactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttga |
119 |
Q |
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| T |
294982 |
ttaactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaacttga |
294883 |
T |
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| Q |
120 |
agactggtgattttcttgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgagga |
219 |
Q |
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| T |
294882 |
agactggtgattttcttgttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttgatctcaaagaatgtggtggatgttgagga |
294783 |
T |
|
| Q |
220 |
ggaaaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaacccctttcttgttgtc |
319 |
Q |
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| T |
294782 |
ggacaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatcattaaccccttacttgttgtc |
294683 |
T |
|
| Q |
320 |
taaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcacagaccgacacctcggattgaaga |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
294682 |
taaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcacagactgacacctcggattgaaga |
294583 |
T |
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| Q |
420 |
tgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacaca |
477 |
Q |
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| T |
294582 |
tgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacaca |
294525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 27490712 - 27490881
Alignment:
| Q |
21 |
taactgcaagaccaggtgttcttattggtgccattgatgcttacctttttgctcctcttcaacttggttttgacaatctatctggaaggagaaatttgaa |
120 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | ||| ||| ||| || | | |||||||||||||||||||||| |
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| T |
27490712 |
taactgcaagaccaggtgttcttattggtgctattgatgcataccttttggctccaatgcaatttgttttggatagtttatctggaaggagaaatttgaa |
27490811 |
T |
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| Q |
121 |
gactggtgattttcttg-ttggagataaaatcggtgaagggtcatttggtgttgtttattctggtgttttg |
190 |
Q |
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| T |
27490812 |
gaggagtga-tttcttgattggtggtaagataggagaagggtcatttggtgttgtttattctgctgttttg |
27490881 |
T |
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