View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17524_high_6 (Length: 225)
Name: NF17524_high_6
Description: NF17524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17524_high_6 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 499157 - 499381
Alignment:
| Q |
1 |
catcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagt |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
499157 |
catcaagaactacaaggagttttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagt |
499256 |
T |
|
| Q |
101 |
ttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
499257 |
ttgatgaagaatttgtttctgcacagcaacacatccaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatt |
499356 |
T |
|
| Q |
201 |
ttgtcatacaagaccgtcacaagag |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
499357 |
ttgtcatacaagaccgtcacaagag |
499381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 107 - 211
Target Start/End: Complemental strand, 25446493 - 25446389
Alignment:
| Q |
107 |
aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||| ||||| || |||||||| |||||||| | ||| |||||||||||| ||||| |
|
|
| T |
25446493 |
aagaatttgtttctgcacagcaacagcaccaccatcttcataaattttactaacgttttcaataaaacaacaagcatcaaattgatatgagattctgtca |
25446394 |
T |
|
| Q |
207 |
tacaa |
211 |
Q |
| |
|
||||| |
|
|
| T |
25446393 |
tacaa |
25446389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 25485426 - 25485325
Alignment:
| Q |
110 |
aatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtcatac |
209 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||||||| || |||||||| |||||||| | ||| ||| ||||||||||||||||| |
|
|
| T |
25485426 |
aatttgtttctgcacagcaacagcaccaccatcctcataaattttgctaacgttttcaataaaacaacaagcatcaaattgaaatgagattttgtcatac |
25485327 |
T |
|
| Q |
210 |
aa |
211 |
Q |
| |
|
|| |
|
|
| T |
25485326 |
aa |
25485325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 54 - 181
Target Start/End: Original strand, 25503477 - 25503604
Alignment:
| Q |
54 |
gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt |
153 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| |||| | | ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
25503477 |
gatatttcagaaggactgtatgcatccagatttggttctttcagagtttgatgaagaatttgtctctgcacagcaatggcaccaccatctctataaattt |
25503576 |
T |
|
| Q |
154 |
tgctaacattctcaataaagcaacaagc |
181 |
Q |
| |
|
|||||||||| || | ||| |||||||| |
|
|
| T |
25503577 |
tgctaacattttcgaaaaaacaacaagc |
25503604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 25638655 - 25638444
Alignment:
| Q |
3 |
tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt |
102 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||| ||||||||| | | |||||| | |||||| || | |||||| | |||||| ||||||| |
|
|
| T |
25638655 |
tcaagaactacaaggagctttttgttttgtagcctatctcttacaattcttgctatttcaggaggactgtacgtgtctagaattttttcttctatagttc |
25638556 |
T |
|
| Q |
103 |
gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagatttt |
202 |
Q |
| |
|
|| ||||||||| ||||||||||||| | | || ||| |||||||||| ||||||||| || | |||| || | |||||||||||||||| | |
|
|
| T |
25638555 |
gacgaagaatttctttctgcacagcattagcaccgccctcttcataaattttgtgaacattctcgatgtaacaacgagtatcaaactgatatgagattct |
25638456 |
T |
|
| Q |
203 |
gtcatacaagac |
214 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25638455 |
gtcatacaagac |
25638444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 194
Target Start/End: Original strand, 25477907 - 25478047
Alignment:
| Q |
54 |
gatatttcggaaggactatatgcctctagattcttttctcttatagtttgatgaagaatttgtttctgcacagcaacacattcaccatctctataaattt |
153 |
Q |
| |
|
|||||||| || ||||| ||| | || ||||| |||||| ||||||| |||| |||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25477907 |
gatatttcagatggactgtatccttccagatttttttcttttatagtctgatctagaattcgtttctgcacagcaatagcaccaccatctctataaattt |
25478006 |
T |
|
| Q |
154 |
tgctaacattctcaataaagcaacaagcgtgaaactgatat |
194 |
Q |
| |
|
|||| |||| ||||| || |||||||| | ||| |||||| |
|
|
| T |
25478007 |
tgctgacatcctcaacgaaacaacaagcatcaaattgatat |
25478047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 211
Target Start/End: Original strand, 25435457 - 25435561
Alignment:
| Q |
107 |
aagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgagattttgtca |
206 |
Q |
| |
|
||||||||||||||||||||||| | |||| | | ||||| ||||||||| ||||||| ||| |||||||| | ||| |||||||||||| ||||| |
|
|
| T |
25435457 |
aagaatttgtttctgcacagcaatagcaccaccgttttcataaaatttgctaacgttctcaacaaaacaacaagcatcaaattgatatgagattctgtca |
25435556 |
T |
|
| Q |
207 |
tacaa |
211 |
Q |
| |
|
||||| |
|
|
| T |
25435557 |
tacaa |
25435561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 35054035 - 35054204
Alignment:
| Q |
3 |
tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt |
102 |
Q |
| |
|
|||||||||||||| | |||| ||||| ||||| || | |||||| | |||||||| ||||| || |||| |||||||| ||||| ||| |||| |
|
|
| T |
35054035 |
tcaagaactacaagaaactttctgttgcacagtcttttacgtacaattccagatatttcagaagggctgtatgtctctagatatttttcatctatggttt |
35054134 |
T |
|
| Q |
103 |
gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaa |
172 |
Q |
| |
|
| |||| ||||||||||| | || |||| ||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
35054135 |
gccgaaggatttgtttctggagagaaacagcaccaccatctctatagattttgcttacattctcaataaa |
35054204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 172
Target Start/End: Original strand, 35176912 - 35177081
Alignment:
| Q |
3 |
tcaagaactacaaggagctttatgttgtgtagtctatttcttacaatccgggatatttcggaaggactatatgcctctagattcttttctcttatagttt |
102 |
Q |
| |
|
|||||||||||||| | |||| ||||| ||||| || | |||||| | |||||||| ||||| || |||| |||||| || ||||| ||| | | || |
|
|
| T |
35176912 |
tcaagaactacaagaaactttttgttgcaaagtcttttacgtacaattccagatatttcagaagggctgtatgtctctaggtttttttcacttgtggctt |
35177011 |
T |
|
| Q |
103 |
gatgaagaatttgtttctgcacagcaacacattcaccatctctataaattttgctaacattctcaataaa |
172 |
Q |
| |
|
| |||| ||||||||||| |||||| |||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
35177012 |
gccgaaggatttgtttctgtacagcagtggcaccaccatctttataaattttgcttacattctcaataaa |
35177081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 35183004 - 35183064
Alignment:
| Q |
138 |
ccatctctataaattttgctaacattctcaataaagcaacaagcgtgaaactgatatgaga |
198 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| |||| || | ||||||||| |||| |
|
|
| T |
35183004 |
ccatctttataaattttgcttacattctcaataaaacaacttgcatcaaactgataagaga |
35183064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University