View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17524_low_2 (Length: 402)

Name: NF17524_low_2
Description: NF17524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17524_low_2
NF17524_low_2
[»] chr1 (6 HSPs)
chr1 (261-384)||(28654829-28654955)
chr1 (304-384)||(28635548-28635628)
chr1 (123-179)||(28655027-28655083)
chr1 (13-75)||(28655135-28655197)
chr1 (322-384)||(28605380-28605442)
chr1 (212-256)||(50880574-50880618)
[»] chr4 (1 HSPs)
chr4 (216-253)||(54779450-54779487)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 261 - 384
Target Start/End: Complemental strand, 28654955 - 28654829
Alignment:
Q  261 tccagcttataagtctcagtgtccgagaggcaacttctaacaagtgtatatgatga---catagacataccattgcaatggcgtctctagcagaaagagc 357  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||   ||||||||||||||||||||  |||||||||||||||||||    
T  28654955 tccagcttataagtctcaccgtccgagaggcaactcctaacatgtgtatatgatgatgacatagacataccattgcaataccgtctctagcagaaagagc 28654856  T
Q  358 gacaatatcagcacatgacactgtcaa 384  Q
     ||||||||||||||||||||||||||    
T  28654855 aacaatatcagcacatgacactgtcaa 28654829  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 28635628 - 28635548
Alignment:
Q  304 gtgtatatgatgacatagacataccattgcaatggcgtctctagcagaaagagcgacaatatcagcacatgacactgtcaa 384  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  28635628 gtgtatatgatgacatagacataccattgcaataccgtctctagcagatagagcgacaatgtcagcgcatgacactgtcaa 28635548  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 28655083 - 28655027
Alignment:
Q  123 aaaacatgatatgcttctcgcgttatttaattatatattactattttacatgcattc 179  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28655083 aaaacatgatatgcttctcccgttatttaattatatattactattttacatgcattc 28655027  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 28655197 - 28655135
Alignment:
Q  13 tgaagacatattagccttaaatacatgataaattaggtcaaaaccaaggccatctcattctgg 75  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  28655197 tgaagacatacgagccttaaatacatgataaattaggtcaaaaccaaggccctctcatgctgg 28655135  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 322 - 384
Target Start/End: Complemental strand, 28605442 - 28605380
Alignment:
Q  322 acataccattgcaatggcgtctctagcagaaagagcgacaatatcagcacatgacactgtcaa 384  Q
    ||||||| | |||||  ||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  28605442 acataccctggcaataccgtctctagcagaaagagcaacaatgtcagcgcatgacactgtcaa 28605380  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 50880618 - 50880574
Alignment:
Q  212 ttttaggcccagctcggctgagctatttgcactccctcagggacg 256  Q
    ||||||||||||||||  |||||| ||||||| ||||||||||||    
T  50880618 ttttaggcccagctcgtttgagctgtttgcaccccctcagggacg 50880574  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 54779487 - 54779450
Alignment:
Q  216 aggcccagctcggctgagctatttgcactccctcaggg 253  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  54779487 aggcccagctcggttgagctgtttgcactccctcaggg 54779450  T

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