View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17524_low_7 (Length: 223)
Name: NF17524_low_7
Description: NF17524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17524_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 37443959 - 37443755
Alignment:
| Q |
19 |
ccttacccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagatacattgcatggctatgtgtcgtccgttatgaagta |
118 |
Q |
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| T |
37443959 |
ccttacccctccctttctatatctgcttcatcctttcaatgaagtatccctctgtagatggagatacattgcatggctatgtgtcgtccgttatgaagta |
37443860 |
T |
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| Q |
119 |
cttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaagtaattgaatcgaactacacacattagtgttg |
218 |
Q |
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| T |
37443859 |
cttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaataaaagtaattgaatcgaactacacacattagtgttg |
37443760 |
T |
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| Q |
219 |
gacac |
223 |
Q |
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||||| |
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| T |
37443759 |
gacac |
37443755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 37708076 - 37707964
Alignment:
| Q |
97 |
atgtgtcgtccgttatgaagtacttacagagacacaaacacctaatacaaaactgacactgacatagcataaaaatttgagaaaat--aaaagtaattga |
194 |
Q |
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|||| ||||| |||||||||||| |||||||||||||||||| ||||||| | |||||||||||||| ||||||| |||||||||| |||||||||||| |
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| T |
37708076 |
atgtttcgtcggttatgaagtacatacagagacacaaacaccgaatacaacattgacactgacatagtataaaaaattgagaaaataaaaaagtaattga |
37707977 |
T |
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| Q |
195 |
atcgaactacaca |
207 |
Q |
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| T |
37707976 |
atcgaacaacaca |
37707964 |
T |
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