View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17525_high_1 (Length: 435)
Name: NF17525_high_1
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17525_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 4145080 - 4144678
Alignment:
| Q |
17 |
tttacaactcttactactataggaattttgcttcatattcttaatggaatgatcctcatgtgacttatagtttgactcagagaaactgtacttctttatg |
116 |
Q |
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| T |
4145080 |
tttacaactcttaccactataggaattttgcttcatattcttaatggaatgatcctcatgtgacttagagtttgactcagagaaactgtacttctttatg |
4144981 |
T |
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| Q |
117 |
gatttatatcttcccattatcaattaatcaaattaaacttgtcctgcttcaatcattgcataacatatcggcccaaacaaacatcacattagttaaacca |
216 |
Q |
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| T |
4144980 |
gatttatatcttcccattatcaattaatcaaattaaacttgtcctgcttcaatcactgcataacatatcggcccaaacaaacatcacattagttaaa--- |
4144884 |
T |
|
| Q |
217 |
tcaataatcatcaataatatgaaaagtatactatgtatagaatctgaaactacaatgctctaacgataatcactcatactttttcagagggattggaatt |
316 |
Q |
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| T |
4144883 |
-------tcatcaataatatgaaaagtatactatgtatagaatctgaaactacaatgctctaacgataatcacttatactttttcagagggattggaatt |
4144791 |
T |
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| Q |
317 |
ttaaagaataataatatacacttgcatagtttggattttctatatgctgcaagagttttagaatcttgctcaaccaaaagatgaattcatatgaaacatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144790 |
ttaaagaataataatatacacttgcatagtttggattttctatatgctgcaagagttttagaatcttgctcaaccaaaagatgaattcatatgaaacatg |
4144691 |
T |
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| Q |
417 |
ccatatttttcga |
429 |
Q |
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| T |
4144690 |
ccacatttttcga |
4144678 |
T |
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