View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17525_high_2 (Length: 433)

Name: NF17525_high_2
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17525_high_2
NF17525_high_2
[»] chr8 (3 HSPs)
chr8 (7-272)||(42562027-42562292)
chr8 (342-418)||(42561881-42561955)
chr8 (231-263)||(15197629-15197661)
[»] chr3 (2 HSPs)
chr3 (201-259)||(30857311-30857369)
chr3 (207-259)||(50708113-50708165)
[»] chr1 (2 HSPs)
chr1 (201-259)||(26319392-26319450)
chr1 (219-259)||(13894187-13894227)
[»] chr5 (2 HSPs)
chr5 (201-257)||(13452755-13452811)
chr5 (201-259)||(41997532-41997590)
[»] chr4 (3 HSPs)
chr4 (219-259)||(31297683-31297723)
chr4 (201-259)||(52742407-52742465)
chr4 (201-265)||(3310088-3310152)
[»] chr7 (3 HSPs)
chr7 (201-259)||(1044110-1044168)
chr7 (232-265)||(36477845-36477878)
chr7 (138-166)||(43520415-43520443)
[»] chr2 (1 HSPs)
chr2 (219-259)||(17327920-17327960)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 272
Target Start/End: Complemental strand, 42562292 - 42562027
Alignment:
Q  7 gagatgaacagaagaacaacttgttaacacggggcaaagggaggatagaagaagaaggattgatgactcagaggccttttttggtgtgtataacgaacag 106  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||    
T  42562292 gagatgaatagaagaacaacttgttaacatagggcaaagggaggatagaagaagaaggattgatgactcaaaagccttttttggtgtatataacgaacag 42562193  T
Q  107 gtgaatgctatatttatacgnnnnnnntcataactttgagaacaagtaactcacatattaatcgagtatcaaaatatcttaataatatttttgcaagtga 206  Q
    |||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42562192 gtgaatgctatatttataggaaaaaaatcataactttgagaacaagtaactcacatattaatcgagtatcaaaatatcttaataatatttttgcaagtga 42562093  T
Q  207 tttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatattatggcactcaatc 272  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  42562092 tttcttaatcttcaagttttgcttaaatattttggaacacaatctaaaatattctagcactcaatc 42562027  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 42561955 - 42561881
Alignment:
Q  342 cactccttaaattaaattgtttattgtttgtattttctcttataaaaaccgataaataggtaagaaattaaaaaagt 418  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  42561955 cactccttaaattaaattgtttattgtttgtatt--ctcttataaaaaccgataaacaggtaagaaattaaaaaagt 42561881  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 15197661 - 15197629
Alignment:
Q  231 aaatattttggaacacaatctaaaatattatgg 263  Q
    ||||||||||| |||||||||||||||||||||    
T  15197661 aaatattttggtacacaatctaaaatattatgg 15197629  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 30857369 - 30857311
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    |||||||||||||||| |||| |||| || ||||||||| |||||||||||||||||||    
T  30857369 aagtgatttcttaatcctcaaattttgctaaaatattttagaacacaatctaaaatatt 30857311  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 50708113 - 50708165
Alignment:
Q  207 tttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    |||||||||||| ||||||| || ||||||||| | || ||||||||||||||    
T  50708113 tttcttaatctttaagttttgctgaaatattttagcactcaatctaaaatatt 50708165  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 26319392 - 26319450
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    ||||| ||||||||| | ||||||| |||  ||||||||||||||||||||||||||||    
T  26319392 aagtgctttcttaatttccaagtttgactagaatattttggaacacaatctaaaatatt 26319450  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 13894227 - 13894187
Alignment:
Q  219 caagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    |||||||| || |||||||||||||| ||||||||||||||    
T  13894227 caagttttgctaaaatattttggaacgcaatctaaaatatt 13894187  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 13452811 - 13452755
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaata 257  Q
    ||||| |||||||||| ||| ||||| || ||| |||||||||||||||||||||||    
T  13452811 aagtgttttcttaatcctcatgttttgctaaaacattttggaacacaatctaaaata 13452755  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 41997590 - 41997532
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    ||||| ||||||| ||  ||||||||||| ||||| ||||||||||||||| |||||||    
T  41997590 aagtgctttcttagtccccaagttttactaaaataatttggaacacaatctgaaatatt 41997532  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 31297683 - 31297723
Alignment:
Q  219 caagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  31297683 caagttttgctaaaatattttggaacacaatctaaaatatt 31297723  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 52742407 - 52742465
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    ||||| ||||||| ||  |||||||| ||||||||||||||||| |||||| |||||||    
T  52742407 aagtgctttcttagtccccaagttttgcttaaatattttggaacgcaatctcaaatatt 52742465  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 3310152 - 3310088
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatattatggca 265  Q
    ||||| ||||||| |  |||||||||  | |||||||||||||| |||||||||||||| |||||    
T  3310152 aagtgttttcttagttctcaagttttgttaaaatattttggaacccaatctaaaatattttggca 3310088  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 1044168 - 1044110
Alignment:
Q  201 aagtgatttcttaatcttcaagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    ||||| ||||||| |  |||||||||||| |||||||||||||| |||||| |||||||    
T  1044168 aagtgctttcttagttgtcaagttttactaaaatattttggaacgcaatctgaaatatt 1044110  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 36477878 - 36477845
Alignment:
Q  232 aatattttggaacacaatctaaaatattatggca 265  Q
    |||||||||||||||||||||||||||| |||||    
T  36477878 aatattttggaacacaatctaaaatattttggca 36477845  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 43520443 - 43520415
Alignment:
Q  138 aactttgagaacaagtaactcacatatta 166  Q
    |||||||||||||||||||||||||||||    
T  43520443 aactttgagaacaagtaactcacatatta 43520415  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 17327960 - 17327920
Alignment:
Q  219 caagttttacttaaatattttggaacacaatctaaaatatt 259  Q
    ||||||||||| ||||||||| |||| ||||||||||||||    
T  17327960 caagttttactaaaatatttttgaacgcaatctaaaatatt 17327920  T

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