View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17525_high_4 (Length: 343)
Name: NF17525_high_4
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17525_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 100592 - 100795
Alignment:
| Q |
1 |
tgtggtgacctcctatggcgttttcaggtacttaattactactactacttatcattatcatattcaataatcatcatttcaccaccgacactactaaatg |
100 |
Q |
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| T |
100592 |
tgtggtgacctcctatggcgttttcaggtacttaattactactacctatcattatcatcatattcaataatcatcatttcaccaccgacactactaaatg |
100691 |
T |
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| Q |
101 |
aatatgaatacataccattctatttgtatggtttaccctccaactatctaattcatttctttacaatattttggaacaaaggatatatagatttacaatc |
200 |
Q |
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| T |
100692 |
aatatgaatacataccattctatttgtatggtttaccctccaactatctaattcatttctttacaatattttggaacaaatgatatatagatttacaatc |
100791 |
T |
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| Q |
201 |
aaaa |
204 |
Q |
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|||| |
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| T |
100792 |
aaaa |
100795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 202 - 333
Target Start/End: Original strand, 100816 - 100943
Alignment:
| Q |
202 |
aaaggtgtttaactttaatcaaatcaaattctaaaatcacacaaactactaattagtgagttttttatttgtgggtaataattttttacctaatgtataa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
100816 |
aaaggtgtttaactttaatcaaatcaaattctaaaatcacacaaactactaattagtgag-tttttatttgtggataataattttttacctaatgtataa |
100914 |
T |
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| Q |
302 |
aagttaaactaataataatacatcatgttcat |
333 |
Q |
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||||||||| |||||||||||||||||||| |
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| T |
100915 |
aagttaaac---taataatacatcatgttcat |
100943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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