View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17525_high_5 (Length: 232)

Name: NF17525_high_5
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17525_high_5
NF17525_high_5
[»] chr1 (1 HSPs)
chr1 (48-219)||(11781203-11781374)
[»] chr2 (1 HSPs)
chr2 (48-211)||(12100828-12100991)
[»] scaffold0021 (1 HSPs)
scaffold0021 (91-181)||(148421-148511)
[»] chr4 (1 HSPs)
chr4 (71-178)||(33042441-33042547)
[»] chr8 (1 HSPs)
chr8 (51-121)||(17458475-17458545)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 11781203 - 11781374
Alignment:
Q  48 ggaaccattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatc 147  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||  | ||||     
T  11781203 ggaaccattttccatgccgccattgttttccaaagctttcccaatttggtgcttaggtcacatgcagagtacggtttctcacccttgtttagagccaatt 11781302  T
Q  148 tagcccgtgatgcattcttgcattcctctacaccacggttatactcctcctgcccaatagggatgatcaaag 219  Q
    |||||||| ||||| |||||||||| ||||||||||||| ||||||||||||||||||  ||||| ||||||    
T  11781303 tagcccgtaatgcactcttgcattcatctacaccacggtgatactcctcctgcccaatgcggatgctcaaag 11781374  T

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Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 12100991 - 12100828
Alignment:
Q  48 ggaaccattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatc 147  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | ||  |||||||    
T  12100991 ggaaccattttccatgctgccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatc 12100892  T
Q  148 tagcccgtgatgcattcttgcattcctctacaccacggttatactcctcctgcccaatagggat 211  Q
    |||||||| | | ||||||| |||||||||||||||||||||||||||||| ||||||| ||||    
T  12100891 tagcccgtaacgtattcttgaattcctctacaccacggttatactcctcctacccaatacggat 12100828  T

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Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 148421 - 148511
Alignment:
Q  91 atttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatctagcccgtgatgcattcttgcattcctctacacc 181  Q
    ||||||| || | ||||||||| || || ||||| |||||||| | ||  ||||||||||||||| | |||||||||||||||||||||||    
T  148421 atttggtactcaagtcacgtgccgaataaggtttatcacccttgtttagagtcaatctagcccgtaacgcattcttgcattcctctacacc 148511  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 33042441 - 33042547
Alignment:
Q  71 tgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatctagcccgtgatgcattcttgcat 170  Q
    |||||||||||||||||| | ||||||  |||||||||||||||| ||||| || || ||||| |  |  ||||||| ||||| | | ||||||||||||    
T  33042441 tgttttccaaagctttccgattttggtatttaggtcacgtgcagaatacggcttatc-cccttgttaagagtcaatcgagcccttaacgcattcttgcat 33042539  T
Q  171 tcctctac 178  Q
    ||||||||    
T  33042540 tcctctac 33042547  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 17458545 - 17458475
Alignment:
Q  51 accattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacgg 121  Q
    |||||||||||  || ||| ||||| |||||||||||| | |||||| |||||||| |||||||| |||||    
T  17458545 accattttccagcccgccaatgtttcccaaagctttcctattttggtacttaggtctcgtgcagaatacgg 17458475  T

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