View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17525_low_3 (Length: 401)
Name: NF17525_low_3
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17525_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 34760204 - 34759825
Alignment:
| Q |
18 |
aaagaacagcactaccttaacagacagtgaagggacatcaccacttgtgtttgtttgtctcttatttgttcagaaaagtaatatcaaaatcctgtattac |
117 |
Q |
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| T |
34760204 |
aaagaacagcactaccttaacagacagtgaagggacatcaccacttatgtttgtttgtctcttgtttgttcagaaaagtaatatcaaaatcctgaattac |
34760105 |
T |
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| Q |
118 |
acgagaaggatcttcttgtacctacattggttattggatgccaaacatg----acttttctagcnnnnnnnnnnnnnnng--gggctatgtttattgccg |
211 |
Q |
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| T |
34760104 |
acgagaaggatcttcttgtacctacattggttattggatgccaaacatgtataacttttctagcaaaaactaaaaagaaaaagggctatgtttattgctg |
34760005 |
T |
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| Q |
212 |
catatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaa |
311 |
Q |
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| T |
34760004 |
catatctgtctattaacaaccttaaatgcatcttattaatcttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaa |
34759905 |
T |
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| Q |
312 |
tataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttg |
391 |
Q |
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| T |
34759904 |
cataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggttattgctggctcctttg |
34759825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 43729184 - 43729054
Alignment:
| Q |
253 |
ttattacagcatgcaattctttttgtaaatggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaat |
352 |
Q |
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| T |
43729184 |
ttattgcagcatgcagttgtttttgtaaatggagaacaatactatggagcaaaagcaagcataaatgtgtggacaccaagggtaactgatcaatatgaat |
43729085 |
T |
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| Q |
353 |
ttagcttgtcacagatatgggttattgctgg |
383 |
Q |
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| T |
43729084 |
tcagcttatcacaaatatgggttattgctgg |
43729054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 374
Target Start/End: Complemental strand, 30928769 - 30928677
Alignment:
| Q |
282 |
tggaaatcaatactttggagcaaaggcaaatataaatgtgtgggcacctcatgtaacagatggatatgaatttagcttgtcacagatatgggt |
374 |
Q |
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| T |
30928769 |
tggagatcgatactatggagcaaaggctacaataaatttgtgggctccacatgtagaagatgaaaatgaattcagcttgtctcaaatatgggt |
30928677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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