View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17525_low_5 (Length: 232)
Name: NF17525_low_5
Description: NF17525
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17525_low_5 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 11781203 - 11781374
Alignment:
| Q |
48 |
ggaaccattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatc |
147 |
Q |
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| T |
11781203 |
ggaaccattttccatgccgccattgttttccaaagctttcccaatttggtgcttaggtcacatgcagagtacggtttctcacccttgtttagagccaatt |
11781302 |
T |
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| Q |
148 |
tagcccgtgatgcattcttgcattcctctacaccacggttatactcctcctgcccaatagggatgatcaaag |
219 |
Q |
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| T |
11781303 |
tagcccgtaatgcactcttgcattcatctacaccacggtgatactcctcctgcccaatgcggatgctcaaag |
11781374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 48 - 211
Target Start/End: Complemental strand, 12100991 - 12100828
Alignment:
| Q |
48 |
ggaaccattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatc |
147 |
Q |
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| T |
12100991 |
ggaaccattttccatgctgccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagaatatggtttctcacccttgtttagagtcaatc |
12100892 |
T |
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| Q |
148 |
tagcccgtgatgcattcttgcattcctctacaccacggttatactcctcctgcccaatagggat |
211 |
Q |
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| T |
12100891 |
tagcccgtaacgtattcttgaattcctctacaccacggttatactcctcctacccaatacggat |
12100828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 148421 - 148511
Alignment:
| Q |
91 |
atttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatctagcccgtgatgcattcttgcattcctctacacc |
181 |
Q |
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| T |
148421 |
atttggtactcaagtcacgtgccgaataaggtttatcacccttgtttagagtcaatctagcccgtaacgcattcttgcattcctctacacc |
148511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 178
Target Start/End: Original strand, 33042441 - 33042547
Alignment:
| Q |
71 |
tgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacggtttctcacccttttatactgtcaatctagcccgtgatgcattcttgcat |
170 |
Q |
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| T |
33042441 |
tgttttccaaagctttccgattttggtatttaggtcacgtgcagaatacggcttatc-cccttgttaagagtcaatcgagcccttaacgcattcttgcat |
33042539 |
T |
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| Q |
171 |
tcctctac |
178 |
Q |
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| T |
33042540 |
tcctctac |
33042547 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 17458545 - 17458475
Alignment:
| Q |
51 |
accattttccacgccaccattgttttccaaagctttcccaatttggtgcttaggtcacgtgcagagtacgg |
121 |
Q |
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| T |
17458545 |
accattttccagcccgccaatgtttcccaaagctttcctattttggtacttaggtctcgtgcagaatacgg |
17458475 |
T |
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