View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17526_low_1 (Length: 645)
Name: NF17526_low_1
Description: NF17526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17526_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 631
Target Start/End: Original strand, 49301772 - 49302385
Alignment:
| Q |
18 |
cattttgcagcccaagagaagtgatttggacatgaaccaacatgttaacaatgtaaagtatctaaggtggatgctagaggtaaattcaaaacaatattaa |
117 |
Q |
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| T |
49301772 |
cattttgcagcccaagagaagtgatttggacatgaaccaacatgttaacaatgtaaagtatctaaggtggatgctagaggtaaattcaaaacaatattaa |
49301871 |
T |
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| Q |
118 |
tatactcattatcattcttcaatatttataccattattagaatataatcaaatagttaactttcannnnnnnnattattgattattttacagaccattcc |
217 |
Q |
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| T |
49301872 |
tatactcattatcattcttcaatatttataccattattagaatataatcaaatagttaactttcattttttttattattgattattttacagaccattcc |
49301971 |
T |
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| Q |
218 |
agaccaaattctagagagtcaccaattatctggtatcacactagaatatagaagggaatgtggaagttcagatatagttcaatcactatgtgaacctgaa |
317 |
Q |
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| T |
49301972 |
agaccaaattctagagagtcaccaattatctggtatcacactagaatatagaagggaatgtggaagttcagatatagttcaatcactatgtgaacctgaa |
49302071 |
T |
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| Q |
318 |
gaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgctcaatggattgtcttttgtaaaatcagatattataaatggtggtg |
417 |
Q |
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| T |
49302072 |
gaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgcttaatggattgtcttttgtaaaatcagatattataaatggtggtg |
49302171 |
T |
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| Q |
418 |
gagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaacaaaatgaagaaattgttagaggaaagactac |
517 |
Q |
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| T |
49302172 |
gagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggagaaaaacaaaatgaagaaattgttagaggaaagactac |
49302271 |
T |
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| Q |
518 |
atggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtgggctttaagaattgggaactgaaagggtacaaagttcaaattg |
617 |
Q |
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| T |
49302272 |
atggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtggtctttaagaattgggaactgaaagggtacaaagttcaaattg |
49302371 |
T |
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| Q |
618 |
tactatggtctgtg |
631 |
Q |
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| T |
49302372 |
tactatggtgtgtg |
49302385 |
T |
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