View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17527_low_3 (Length: 210)
Name: NF17527_low_3
Description: NF17527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17527_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 34813185 - 34812992
Alignment:
| Q |
1 |
aattccagcaagaaccttttcctcagaattcaactcactgctagtgctacttccagaacaagacataagtgtttcatagtaacccaaactaacagccatg |
100 |
Q |
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| T |
34813185 |
aattccagcaagaaccttttcctcagaattcaactcactgctagtgctacttccagaacaagacataagtgtttcatagtaacccaaactaacagccatg |
34813086 |
T |
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| Q |
101 |
aaaccaaattgtccatagttttgcaaataactcatcaatttgttagctctttcttctgtttccatgtcaatgcaaagaagtccaccatagccat |
194 |
Q |
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| T |
34813085 |
aaaccaaattgtccatagttttgcaaataactcatcaatttgttagctctttcttctgtttccatgtcaatgcaaagaagtccaccatagccat |
34812992 |
T |
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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 147
Target Start/End: Original strand, 36593626 - 36593745
Alignment:
| Q |
28 |
attcaactcactgctagtgctacttccagaacaagacataagtgtttcatagtaacccaaactaacagccatgaaaccaaattgtccatagttttgcaaa |
127 |
Q |
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||||| |||||| || |||||||| ||||| |||||||| || |||||||| || || |||||||| ||||| |||||||| || ||||||||||||| |
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| T |
36593626 |
attcagctcactacttgtgctactaccagagcaagacattagggtttcataataccctaaactaactgccataaaaccaaaatgagcatagttttgcaag |
36593725 |
T |
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| Q |
128 |
taactcatcaatttgttagc |
147 |
Q |
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|| ||||| || |||||||| |
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| T |
36593726 |
tagctcatgaacttgttagc |
36593745 |
T |
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