View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17528_high_2 (Length: 603)
Name: NF17528_high_2
Description: NF17528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17528_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 176
Target Start/End: Complemental strand, 29445996 - 29445828
Alignment:
| Q |
8 |
gagtgagatgaaatcaagtggtattaaacaagataataatgtttggatttaaaagagtcgtatgaaaaagatgatggaatccatttcattccatcctctt |
107 |
Q |
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| T |
29445996 |
gagtgaaatgaaatcaagtggtattaaacaagataatattgtttggatttaaaagagtcgtatgaaaaagatgatggaatccatttcattccatcctctt |
29445897 |
T |
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| Q |
108 |
ctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
176 |
Q |
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| T |
29445896 |
ctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
29445828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 29445735 - 29445577
Alignment:
| Q |
272 |
gcatgcgtgcctattcttttggatttattttgctgccttttcttcgtgcgtatatatggttgtattgatagataattcatgtgggtttctttggctaatt |
371 |
Q |
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| T |
29445735 |
gcatgcatgcgtattcttttggatttattttactgccttttcttcgtgcgtatatatgattgtattgatagataattcatgtgggtttctttggctaatt |
29445636 |
T |
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| Q |
372 |
attctttgtgcgcatgcgtgtttcctatttctgctttgtgcatggcttatgtttgattt |
430 |
Q |
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| T |
29445635 |
attctttgtgcgcatgcgtgtttcctatttctgctttgtgcatggcttatgtttgattt |
29445577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 519 - 603
Target Start/End: Complemental strand, 29445584 - 29445502
Alignment:
| Q |
519 |
tttgatttatctaccaaataaataaaagatgtcgggttaaaacttaaaaacattgagaggtctaaaccttttgaccggaaataaa |
603 |
Q |
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| T |
29445584 |
tttgatttatctaccaaataaacaa--gatgtcgggttaaaacttaaaaacattgagaggtctgaaccttttgaccggaaataaa |
29445502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 29420929 - 29421006
Alignment:
| Q |
94 |
cattccatcctcttctattagtttccattccttctaatttaggataggagatatgcaatggaatgagacatcttaattaaata |
176 |
Q |
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| T |
29420929 |
cattccatcttcttcccttaatttccattccttctaatttagg-----agatatgcaatagaatgagatatcttaattaaata |
29421006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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