View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17528_high_6 (Length: 248)
Name: NF17528_high_6
Description: NF17528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17528_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 45936755 - 45936550
Alignment:
| Q |
1 |
tgaatgtaccgcataaagagaagaggtaagtctcatagcatcactgagtgaccaagatgagactctatggtcaaaacacaaggcaatgaacacacattga |
100 |
Q |
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| T |
45936755 |
tgaatgtaccgcataaagagaagaggtaagtctcatagcatcactgagtgaccaagatgagactctatggtcaaaacacaaggcaatgaacacacattga |
45936656 |
T |
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| Q |
101 |
aaacttgccaagaaacacatgtaggctgtgcttgtataaggtactggaaaattcttgctcatatctgcctgaaattaacaaacaaaacaaaataacttag |
200 |
Q |
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| T |
45936655 |
aaacttgccaagaaacacatgtaggctgtgcttgtataaggtactggaaaattcttgctcatatctgcctgaaattaacaaacaaaacaaaataacttag |
45936556 |
T |
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| Q |
201 |
taatta |
206 |
Q |
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|||||| |
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| T |
45936555 |
taatta |
45936550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 10562450 - 10562285
Alignment:
| Q |
16 |
aagagaagaggtaagtctcatagcatcactgagtgaccaagatgagactctatggtcaaaacacaaggcaatgaacacacattgaaaacttgccaagaaa |
115 |
Q |
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| T |
10562450 |
aagagaagaggcaagtctcatagcatcatgcagtgaccaagctgagacactatgatcaaaacataaggcaatgaacacacactgaatacttcccaagata |
10562351 |
T |
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| Q |
116 |
cacatgtaggctgtgcttgtataaggtactggaaaattcttgctcatatctgcctgaaattaacaa |
181 |
Q |
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| T |
10562350 |
cacatgtatgctgtgcttgtataaggtactggaaaattcttgctcatatctgcctgaggttaacaa |
10562285 |
T |
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