View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17528_low_5 (Length: 307)

Name: NF17528_low_5
Description: NF17528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17528_low_5
NF17528_low_5
[»] chr8 (17 HSPs)
chr8 (98-297)||(168107-168321)
chr8 (17-84)||(167882-167949)
chr8 (21-84)||(28207625-28207688)
chr8 (25-74)||(33013056-33013105)
chr8 (25-85)||(1135161-1135221)
chr8 (21-73)||(1369901-1369953)
chr8 (21-73)||(4384177-4384229)
chr8 (21-73)||(27801268-27801320)
chr8 (21-64)||(3146057-3146100)
chr8 (21-71)||(35901945-35901995)
chr8 (19-83)||(2250356-2250420)
chr8 (21-84)||(37813444-37813508)
chr8 (21-64)||(5588981-5589024)
chr8 (23-78)||(17081415-17081470)
chr8 (21-74)||(12684536-12684589)
chr8 (23-56)||(24695776-24695809)
chr8 (19-52)||(42636406-42636439)
[»] chr1 (18 HSPs)
chr1 (21-84)||(7212774-7212837)
chr1 (21-78)||(44329603-44329660)
chr1 (21-73)||(39156273-39156325)
chr1 (23-74)||(38748765-38748816)
chr1 (23-74)||(39914649-39914700)
chr1 (21-55)||(2864172-2864206)
chr1 (19-61)||(43397055-43397097)
chr1 (23-84)||(4851289-4851349)
chr1 (21-73)||(8365515-8365567)
chr1 (23-75)||(26327806-26327858)
chr1 (24-64)||(34232752-34232792)
chr1 (21-73)||(39150594-39150646)
chr1 (21-84)||(47187863-47187926)
chr1 (23-73)||(8794428-8794478)
chr1 (21-75)||(26604974-26605028)
chr1 (23-84)||(32562397-32562458)
chr1 (21-54)||(38491252-38491285)
chr1 (33-73)||(8373007-8373047)
[»] chr3 (12 HSPs)
chr3 (21-72)||(48180213-48180264)
chr3 (19-74)||(49362394-49362449)
chr3 (32-73)||(12570934-12570975)
chr3 (32-73)||(13547398-13547439)
chr3 (17-67)||(26900061-26900112)
chr3 (19-64)||(26143091-26143136)
chr3 (21-74)||(45988267-45988320)
chr3 (21-64)||(22730528-22730571)
chr3 (23-73)||(52638202-52638252)
chr3 (23-56)||(16663006-16663039)
chr3 (19-64)||(29083940-29083985)
chr3 (33-73)||(52249338-52249378)
[»] chr4 (18 HSPs)
chr4 (21-71)||(31429291-31429341)
chr4 (23-84)||(50426990-50427051)
chr4 (21-74)||(50341909-50341962)
chr4 (21-84)||(7444427-7444491)
chr4 (21-73)||(51834926-51834978)
chr4 (21-84)||(8297872-8297935)
chr4 (21-84)||(20394639-20394702)
chr4 (19-73)||(49400624-49400678)
chr4 (21-74)||(35777741-35777794)
chr4 (19-64)||(41462070-41462115)
chr4 (23-75)||(37138206-37138258)
chr4 (21-73)||(45900191-45900243)
chr4 (25-73)||(49084447-49084495)
chr4 (19-73)||(7852584-7852638)
chr4 (23-73)||(25115307-25115357)
chr4 (23-52)||(47040789-47040818)
chr4 (21-74)||(51736365-51736418)
chr4 (25-73)||(37440838-37440886)
[»] chr2 (9 HSPs)
chr2 (19-73)||(19890229-19890283)
chr2 (21-84)||(1334926-1334989)
chr2 (23-75)||(41933141-41933193)
chr2 (31-84)||(34904840-34904893)
chr2 (21-84)||(14295629-14295692)
chr2 (25-64)||(20064932-20064971)
chr2 (21-56)||(29239291-29239326)
chr2 (21-64)||(31452388-31452431)
chr2 (19-73)||(37993090-37993144)
[»] chr6 (13 HSPs)
chr6 (21-73)||(1840995-1841047)
chr6 (21-84)||(1371206-1371269)
chr6 (21-84)||(1378954-1379017)
chr6 (21-56)||(31855083-31855118)
chr6 (25-82)||(23399113-23399170)
chr6 (25-73)||(2692476-2692524)
chr6 (21-73)||(17215725-17215777)
chr6 (31-71)||(26669331-26669371)
chr6 (26-73)||(11720925-11720972)
chr6 (23-73)||(19293497-19293547)
chr6 (31-84)||(3766278-3766331)
chr6 (19-55)||(7421702-7421738)
chr6 (21-69)||(32823693-32823741)
[»] chr7 (20 HSPs)
chr7 (21-84)||(21727448-21727511)
chr7 (21-84)||(27123275-27123338)
chr7 (23-74)||(35731298-35731349)
chr7 (25-74)||(39321028-39321077)
chr7 (23-74)||(3692888-3692939)
chr7 (21-64)||(28663181-28663224)
chr7 (21-64)||(28770498-28770541)
chr7 (30-78)||(26197545-26197593)
chr7 (21-61)||(35496615-35496655)
chr7 (25-73)||(44592878-44592926)
chr7 (21-84)||(22618739-22618802)
chr7 (25-56)||(47778600-47778631)
chr7 (19-73)||(25886182-25886236)
chr7 (23-73)||(37158400-37158450)
chr7 (25-63)||(43224133-43224171)
chr7 (21-78)||(27337704-27337761)
chr7 (19-64)||(42936028-42936072)
chr7 (31-71)||(3719219-3719259)
chr7 (21-57)||(7653604-7653640)
chr7 (28-64)||(44537362-44537398)
[»] chr5 (13 HSPs)
chr5 (21-84)||(16667334-16667397)
chr5 (19-73)||(3140826-3140880)
chr5 (26-71)||(7719218-7719263)
chr5 (25-74)||(15720078-15720127)
chr5 (21-84)||(18229644-18229707)
chr5 (21-84)||(30501182-30501245)
chr5 (21-84)||(30541525-30541588)
chr5 (19-84)||(2918637-2918702)
chr5 (21-73)||(8208191-8208243)
chr5 (21-56)||(30104833-30104868)
chr5 (19-64)||(34899176-34899221)
chr5 (21-73)||(8221134-8221186)
chr5 (20-64)||(39558808-39558852)
[»] scaffold0036 (1 HSPs)
scaffold0036 (21-84)||(62567-62630)
[»] scaffold1444 (2 HSPs)
scaffold1444 (21-57)||(1746-1782)
scaffold1444 (25-57)||(978-1010)
[»] scaffold0119 (1 HSPs)
scaffold0119 (31-71)||(1422-1462)
[»] scaffold0111 (1 HSPs)
scaffold0111 (24-57)||(38154-38187)
[»] scaffold0268 (1 HSPs)
scaffold0268 (21-57)||(20290-20326)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 98 - 297
Target Start/End: Original strand, 168107 - 168321
Alignment:
Q  98 gatttgtcctaaagcatcatatcataatcacacccatgcataaagctacgcacaacagtgcatgcaattcaactactctttaaatggaaaagctaattgc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  168107 gatttgtcctaaagcatcatatcataatcacacccatgcataaaggtacgcacaacagtgcatgcaattcaactactctttaaatggaaaagctaattgc 168206  T
Q  198 ctgtcctttttcttctgtt---------------ccaagttagggttaagggcgtccatgtgacctaaattgtatgaatgtggtgaactaaaattgtttc 282  Q
    |||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  168207 ctgtcctttttcttctgttccttctctttaaatgccaagttagggttaagggcgtccatgtgacctaaattgtatgaatgtggtgaactaaaattgtttc 168306  T
Q  283 gttaaggtttctgtg 297  Q
    |||||||||||||||    
T  168307 gttaaggtttctgtg 168321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 167882 - 167949
Alignment:
Q  17 aataaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  167882 aataaatgcattggaaattataatagttgactttttaaaagaataatttttaaatttgagatacttaa 167949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 28207688 - 28207625
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||||||||||||||||||||||| || ||| ||||||||| ||| |||||    
T  28207688 aatgcattggaaattgtaatagttgactttttaaaagaattattgttaaatttgggatgcttaa 28207625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 33013105 - 33013056
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  33013105 cattggaaattgtaatagttgactttttaaaagaataattgttaaatttg 33013056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 1135221 - 1135161
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaat 85  Q
    ||||| ||||||||||||||||||||||||||| ||||||  |||||| ||||| ||||||    
T  1135221 cattgaaaattgtaatagttgactttttaaaagaataattactaaattcgagatgcttaat 1135161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 1369901 - 1369953
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||  |||||||    
T  1369901 aatgcattggaaattgtgatagttgactttttaaaagaataattgctaaattt 1369953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 4384177 - 4384229
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  4384177 aatgcattggaaattgtaatagttgattttttaaaagaataattactaaattt 4384229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 27801268 - 27801320
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||  |||||||    
T  27801268 aatgcattgaaaattgtaatagttgactttttaaaagaataattactaaattt 27801320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 3146100 - 3146057
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||||||||||||||||||||| |||||||||||| ||||||    
T  3146100 aatgcattggaaattgtaatagttaactttttaaaagaataatt 3146057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 35901995 - 35901945
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    ||||||||||||||||||||| ||||||||||||||  |||||| ||||||    
T  35901995 aatgcattggaaattgtaataattgactttttaaaaaaataattattaaat 35901945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 2250420 - 2250356
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatactta 83  Q
    ||||| ||||| ||||| |||| |||||||||||||||| |||||| ||||||||| ||| ||||    
T  2250420 taaatacattgaaaattataatggttgactttttaaaagaataattattaaatttgggatgctta 2250356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 37813444 - 37813508
Alignment:
Q  21 aatgcattggaaattgtaatagttgac-tttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||||||||||||||||||| |||||| |||||||||| ||||||  |||||||| ||| |||||    
T  37813444 aatgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggatccttaa 37813508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 5589024 - 5588981
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  5589024 aatgcattgaaaattataatagttgactttttaaaagaataatt 5588981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 17081415 - 17081470
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagat 78  Q
    |||||| ||||||||||||||||||||||| |||  ||||||  ||||||||||||    
T  17081415 tgcattagaaattgtaatagttgacttttttaaaaaataattgctaaatttgagat 17081470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 12684536 - 12684589
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    |||||||| ||||||||||||||||| | ||| |||| |||||| |||||||||    
T  12684536 aatgcattagaaattgtaatagttgattctttgaaagaataattattaaatttg 12684589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 24695809 - 24695776
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaa 56  Q
    |||||| |||||||||||||||||||||||||||    
T  24695809 tgcattagaaattgtaatagttgactttttaaaa 24695776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 42636406 - 42636439
Alignment:
Q  19 taaatgcattggaaattgtaatagttgacttttt 52  Q
    ||||||||||| ||||||||||||||||||||||    
T  42636406 taaatgcattgtaaattgtaatagttgacttttt 42636439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 7212837 - 7212774
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||||||||||||||||||| ||| |||||||||||||||||||  ||||||||||||||||||    
T  7212837 aatgcattggaaattgtaattgttaactttttaaaagtataattactaaatttgagatacttaa 7212774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 44329660 - 44329603
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagat 78  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  44329660 aatgcattgaaaattataatagttgactttttaaaagaataattattaaatatgagat 44329603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 39156325 - 39156273
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||||||||| |||||||||||||||||| ||||||  |||||||    
T  39156325 aatgcattggaaattgtagtagttgactttttaaaagaataattactaaattt 39156273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 38748765 - 38748816
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  38748765 tgcattgaaaattataatagttgactttttaaaagaataatttctaaatttg 38748816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 39914649 - 39914700
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||||| ||||||||||||||||||||||||||| | |||| |||||||||    
T  39914649 tgcattgaaaattgtaatagttgactttttaaaagaacaattgttaaatttg 39914700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 2864206 - 2864172
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaa 55  Q
    |||||||||||||||||||||||||||||||||||    
T  2864206 aatgcattggaaattgtaatagttgactttttaaa 2864172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 43397055 - 43397097
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtata 61  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  43397055 taaatgcattggaaattataatagttgactttttaaaaatata 43397097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 4851289 - 4851349
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||||| |||| || |||||    
T  4851289 tgcatttgaaattgtaatagttgacttttt-aaagaataatttttaaaattgacatgcttaa 4851349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8365567 - 8365515
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||| | |||||||||||||| |||||||||| |||||| ||||||||    
T  8365567 aatgcattgaagattgtaatagttgattttttaaaagaataattattaaattt 8365515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 26327858 - 26327806
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttga 75  Q
    ||||||| |||||||||||||| | ||||| |||| |||||||||||||||||    
T  26327858 tgcattgaaaattgtaatagtttagttttttaaagaataatttttaaatttga 26327806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 34232752 - 34232792
Alignment:
Q  24 gcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  34232752 gcattgaaaattgtaatagttgactttttaaaagaataatt 34232792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 39150646 - 39150594
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||| ||||||||||||||||||||||| ||| ||||||  |||||||    
T  39150646 aatgcattgtaaattgtaatagttgactttttacaagaataattactaaattt 39150594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 47187863 - 47187926
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||| |||||||||| |||||||| | ||||||  |||||||| ||| |||||    
T  47187863 aatgcattggaaattataatagttgattttttaaatgaataattactaaatttgggatgcttaa 47187926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 8794478 - 8794428
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||  |||||||    
T  8794478 tgcattgaaaattataatagttgactttttaaaagaataattactaaattt 8794428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 26604974 - 26605028
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttga 75  Q
    |||| |||| || |||||||| || |||||||||||| |||||||||||||||||    
T  26604974 aatgtattgaaatttgtaataatttactttttaaaagaataatttttaaatttga 26605028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 32562397 - 32562458
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||| |||||||||||||||| |||||||||  ||||||  ||||||| |||| |||||    
T  32562397 tgcattgaaaattgtaatagttgaatttttaaaataataattactaaattttagattcttaa 32562458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 38491285 - 38491252
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaa 54  Q
    ||||||||| ||||||||||||||||||||||||    
T  38491285 aatgcattgtaaattgtaatagttgactttttaa 38491252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 8373047 - 8373007
Alignment:
Q  33 attgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||||| |||||||||| |||||| ||||||||    
T  8373047 attgtaatagttgattttttaaaagaataattattaaattt 8373007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 48180213 - 48180264
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatt 72  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  48180213 aatgcattggaaattgtaatagttgactttttaaaagaataattgttaaatt 48180264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 49362394 - 49362449
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||    
T  49362394 taaatacattggaaattgtaatagttaactttttaaaagaataattattaaatttg 49362449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 12570934 - 12570975
Alignment:
Q  32 aattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  12570934 aattgtaatagttgactttttaaaagtataattgttaaattt 12570975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 13547398 - 13547439
Alignment:
Q  32 aattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  13547398 aattgtaatagttgactttttaaaagtataattgttaaattt 13547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26900061 - 26900112
Alignment:
Q  17 aataaatgcattggaaattgtaatagttgac-tttttaaaagtataattttt 67  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||||||||    
T  26900061 aataaatgcattgaaaattgtaatagttgacttttttaaaagaataattttt 26900112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 26143136 - 26143091
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||    
T  26143136 taaatgcattcaaaattgtaatagttgactttttaaaagaataatt 26143091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 45988267 - 45988320
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    |||||||| ||||||||||||||||| |||||||||| |||||| | |||||||    
T  45988267 aatgcattagaaattgtaatagttgattttttaaaagaataattgtcaaatttg 45988320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 22730528 - 22730571
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||    
T  22730528 aatgcattgaaaattataatagttgactttttaaaagaataatt 22730571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 52638202 - 52638252
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||||||||| ||||||||||  ||||||  |||||||    
T  52638202 tgcattggaaattgtaatagttggctttttaaaataataattactaaattt 52638252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 16663039 - 16663006
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaa 56  Q
    |||||||| |||||||||||||||||||||||||    
T  16663039 tgcattggtaattgtaatagttgactttttaaaa 16663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 29083940 - 29083985
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||||  |||||||||||||| |||||||||||| ||||||    
T  29083940 taaatgcattaaaaattgtaatagttaactttttaaaagaataatt 29083985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 52249378 - 52249338
Alignment:
Q  33 attgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||| |||||||||||| |||||| ||||||||    
T  52249378 attgtaatagttaactttttaaaagaataattattaaattt 52249338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 31429341 - 31429291
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  31429341 aatgcattggaaattgtaatagttgattttttaaaagaataatttttaaat 31429291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 50427051 - 50426990
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||| |||||    
T  50427051 tgcattggaaattgtaatagttgacttttcaaaagaataattactaaatttgagatgcttaa 50426990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 50341909 - 50341962
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  50341909 aatgcgttggaaattgtaatagttgactttttaaaagaataattactaaatttg 50341962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 7444427 - 7444491
Alignment:
Q  21 aatgcattggaaattgtaatagttgac-tttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||  |||||||| ||| |||||    
T  7444427 aatgcattgaaaattgtaatagttgacttttttaaaagtataattactaaatttgggatgcttaa 7444491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 51834978 - 51834926
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||  |||||||    
T  51834978 aatgcattggaaattataatagttgactttttaaaagaataattgctaaattt 51834926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 8297935 - 8297872
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||  |||||||| ||| |||||    
T  8297935 aatgcattggaaattgtaacagttgacattttaaaagaataattactaaatttgggatgcttaa 8297872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 20394702 - 20394639
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||  |||||||| ||| |||||    
T  20394702 aatgtattggaaattgtaatagttcactttttaaaagaataattactaaatttgggatgcttaa 20394639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 49400678 - 49400624
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||| |||||||||||||||||||||| |||||||||| ||||||  |||||||    
T  49400678 taaatacattggaaattgtaatagttgattttttaaaagaataattactaaattt 49400624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 35777741 - 35777794
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||  ||||||||    
T  35777741 aatgcattagaaattgtaatagttaactttttaaaagaataattactaaatttg 35777794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 41462115 - 41462070
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||    
T  41462115 taaatgcataagaaattgtaatagttgactttttaaaagaataatt 41462070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 37138206 - 37138258
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttga 75  Q
    ||||||||||||| ||||||||||||||||||||| ||| ||  |||||||||    
T  37138206 tgcattggaaattataatagttgactttttaaaagaatagttgctaaatttga 37138258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 45900191 - 45900243
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||  |||||||    
T  45900191 aatgcattggaaattgtgatagttgactttataaaagaataattgctaaattt 45900243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 49084447 - 49084495
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||| ||||||||||||||||||||||||||| ||||||  |||||||    
T  49084447 cattgaaaattgtaatagttgactttttaaaagaataattactaaattt 49084495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 7852584 - 7852638
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||| |||||||||||||| | |||||||||| ||||||  |||||||    
T  7852584 taaatgcattgaaaattgtaatagttaattttttaaaagaataattactaaattt 7852638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 25115307 - 25115357
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||||||||||||| |||||||||||  ||||||  |||||||    
T  25115307 tgcattggaaattgtaatagttaactttttaaaataataattactaaattt 25115357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 47040789 - 47040818
Alignment:
Q  23 tgcattggaaattgtaatagttgacttttt 52  Q
    ||||||||||||||||||||||||||||||    
T  47040789 tgcattggaaattgtaatagttgacttttt 47040818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 51736418 - 51736365
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    |||| |||| ||||| ||||||||||||||||||||| ||||||  ||||||||    
T  51736418 aatgtattgaaaattataatagttgactttttaaaagaataattgctaaatttg 51736365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 37440886 - 37440838
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||| ||||||||||||||||||||||||||  ||||||  |||||||    
T  37440886 cattgaaaattgtaatagttgactttttaaaataataattactaaattt 37440838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 19890229 - 19890283
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||  |||||||    
T  19890229 taaatgcattggaaattgtaatagttgactttttaaaagaataattactaaattt 19890283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 1334926 - 1334989
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| ||| |||||    
T  1334926 aatgcattggaaattgtaatagttgatttttttaaagaataattattaaatttgggatgcttaa 1334989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 41933193 - 41933141
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttga 75  Q
    ||||||| ||||||||||||||||||||||||||| ||||||  |||||||||    
T  41933193 tgcattgaaaattgtaatagttgactttttaaaagaataattgctaaatttga 41933141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 34904840 - 34904893
Alignment:
Q  31 aaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||||||||||||||| |||||||||| ||||||  ||||| ||||||||||||    
T  34904840 aaattgtaatagttgattttttaaaagaataattactaaatatgagatacttaa 34904893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 14295692 - 14295629
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| |||||||||||||| || ||||||||| ||||||  |||||||| ||| |||||    
T  14295692 aatgcattgaaaattgtaatagttaaccttttaaaagaataattactaaatttgggattcttaa 14295629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 20064971 - 20064932
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  20064971 cattgaaaattgtaatagttgactttttaaaagaataatt 20064932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 29239291 - 29239326
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaa 56  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29239291 aatgcattgaaaattgtaatagttgactttttaaaa 29239326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 31452388 - 31452431
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||| |||||||||| |||||||||||||||| ||||||    
T  31452388 aatgcattgaaaattgtaattgttgactttttaaaagaataatt 31452431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 37993144 - 37993090
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||| |||||||||||||||| ||||| |||| ||| || ||||||||    
T  37993144 taaatgcattgaaaattgtaatagttgattttttgaaagaatagttattaaattt 37993090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 1841047 - 1840995
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||    
T  1841047 aatgcattggaaattgtaatagttgattttttaaaagaataattattaaattt 1840995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 1371206 - 1371269
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| |||||||   ||||||||||||||||| |||||| |||||||||| ||||||||    
T  1371206 aatgcattgaaaattgtggaagttgactttttaaaagaataattattaaatttgaaatacttaa 1371269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 1378954 - 1379017
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| |||||||   ||||||||||||||||| |||||| |||||||||| ||||||||    
T  1378954 aatgcattgaaaattgtggaagttgactttttaaaagaataattattaaatttgaaatacttaa 1379017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 31855118 - 31855083
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaa 56  Q
    ||||||||||||||||||||||||||||||||||||    
T  31855118 aatgcattggaaattgtaatagttgactttttaaaa 31855083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 23399170 - 23399113
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatactt 82  Q
    ||||| ||||| |||||||| |||||||||||| ||||||| ||||||| ||||||||    
T  23399170 cattgaaaattataatagttaactttttaaaagaataatttctaaatttaagatactt 23399113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 2692476 - 2692524
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||||||||||||||||||||||||||  ||||||  |||||||    
T  2692476 cattggaaattgtaatagttgactttttaaaataataattactaaattt 2692524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 17215725 - 17215777
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||  |||||||    
T  17215725 aatgcattgaaaattgtaatagttgactttttaaaaaaataattactaaattt 17215777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 26669331 - 26669371
Alignment:
Q  31 aaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  26669331 aaattgtaatagttgactttttaaaagaataattattaaat 26669371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 11720925 - 11720972
Alignment:
Q  26 attggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||| ||||||||||||||||||| ||||||| |||||| ||||||||    
T  11720925 attgaaaattgtaatagttgacttcttaaaagaataattgttaaattt 11720972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 19293497 - 19293547
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||| |||||||||||||||| |||||||||||  |||||| ||||||||    
T  19293497 tgcatcggaaattgtaatagttaactttttaaaataataattgttaaattt 19293547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 3766331 - 3766278
Alignment:
Q  31 aaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||| ||||||||||||||| |||||||  ||||||| ||| |||||    
T  3766331 aaattgtaataattgactttttaaaagaataatttccaaatttgggatgcttaa 3766278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 7421738 - 7421702
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaa 55  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  7421738 taaatgcattgaaaattgtaatatttgactttttaaa 7421702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 32823741 - 32823693
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaa 69  Q
    ||||||||| ||||||||||| ||||||||| ||||| |||||| ||||    
T  32823741 aatgcattgaaaattgtaataattgacttttcaaaagaataattattaa 32823693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 21727448 - 21727511
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| |||||||||||||||||||||||||||||||| ||||||  |||||| ||||| |||||    
T  21727448 aatgtattggaaattgtaatagttgactttttaaaagaataattactaaattggagatgcttaa 21727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 27123338 - 27123275
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||||||||||||||||||||||| || |||  |||||||| ||| |||||    
T  27123338 aatgcattggaaattgtaatagttgactttttaaaagaatgattactaaatttgggatgcttaa 27123275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 35731349 - 35731298
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  35731349 tgcattggaaattgtaatagttgactttttaaaagaatagttgttaaatttg 35731298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 39321028 - 39321077
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||| ||||||||||||||||||||||||||| |||||| |||||||||    
T  39321028 cattgaaaattgtaatagttgactttttaaaagaataattgttaaatttg 39321077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 3692939 - 3692888
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    |||||||||||||||||||||||| |||||||||| ||||||  ||||||||    
T  3692939 tgcattggaaattgtaatagttgattttttaaaagaataattgctaaatttg 3692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 28663181 - 28663224
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||    
T  28663181 aatgcattgaaaattgtaatagttgactttttaaaagaataatt 28663224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 28770541 - 28770498
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||    
T  28770541 aatgcattggaaattgtaatagttgacttttcaaaagaataatt 28770498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 26197593 - 26197545
Alignment:
Q  30 gaaattgtaatagttgactttttaaaagtataatttttaaatttgagat 78  Q
    ||||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  26197593 gaaattgtaatagttgaatttttaaaggaatagtttttaaatttgagat 26197545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 35496615 - 35496655
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtata 61  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  35496615 aatgcattgaaaattgtaatagttgactttttaaaaatata 35496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 44592926 - 44592878
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||| |||||||||||||| |||||||||||| |||||| ||||||||    
T  44592926 cattgaaaattgtaatagttaactttttaaaagaataattattaaattt 44592878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 22618739 - 22618802
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| ||||||||||||||||| |||| ||   |||||||||||||||| ||| |||||    
T  22618739 aatgcattgaaaattgtaatagttgacattttgaagaaataatttttaaatttgggatccttaa 22618802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 47778600 - 47778631
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaa 56  Q
    ||||||||||||||||||||||||||||||||    
T  47778600 cattggaaattgtaatagttgactttttaaaa 47778631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 25886236 - 25886182
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||| |||| |||||||||||||||||||| ||| || ||||||| |||||||    
T  25886236 taaatgtattgaaaattgtaatagttgactttctaagagaataatttctaaattt 25886182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 37158400 - 37158450
Alignment:
Q  23 tgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||| ||||||||||||||||||||||||||  ||||||  |||||||    
T  37158400 tgcattgaaaattgtaatagttgactttttaaaataataattactaaattt 37158450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 43224133 - 43224171
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataat 63  Q
    ||||||||||||||| ||||||||||||||||| |||||    
T  43224133 cattggaaattgtaacagttgactttttaaaagaataat 43224171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 27337761 - 27337704
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagat 78  Q
    |||| |||| ||| |||||||||||| ||||| |||| |||||| |||||||||||||    
T  27337761 aatgtattgtaaactgtaatagttgatttttttaaagaataattgttaaatttgagat 27337704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 42936072 - 42936028
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    ||||||||||| |||||||||||||||| |||||||||| ||||||    
T  42936072 taaatgcattg-aaattgtaatagttgattttttaaaagaataatt 42936028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 3719259 - 3719219
Alignment:
Q  31 aaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    ||||||||||||||||||||||||||  ||||||| |||||    
T  3719259 aaattgtaatagttgactttttaaaacaataatttataaat 3719219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 7653640 - 7653604
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaag 57  Q
    |||| |||||||||| |||||||||||||||||||||    
T  7653640 aatgaattggaaattataatagttgactttttaaaag 7653604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 44537398 - 44537362
Alignment:
Q  28 tggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  44537398 tggaaattataatagttgactttttaaaagaataatt 44537362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 16667334 - 16667397
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| |||||||||||||||| ||||||||||||||| |||||| ||||||||| ||| |||||    
T  16667334 aatgtattggaaattgtaataattgactttttaaaagaataattattaaatttgtgatgcttaa 16667397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 3140880 - 3140826
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    |||||| |||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  3140880 taaatgaattgaaaattgtaatagttgactttttaaaagaataattattaaattt 3140826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7719263 - 7719218
Alignment:
Q  26 attggaaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  7719263 attggaaattgtaatagttgattttttaaaagaataatttttaaat 7719218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 15720127 - 15720078
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaagtataatttttaaatttg 74  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||    
T  15720127 cattggaaattgtaatagttgactttttaaaagaataattgataaatttg 15720078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 18229644 - 18229707
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| ||||||||||||||||||| |||||||||||| ||||||  |||||||| ||| |||||    
T  18229644 aatgtattggaaattgtaatagttaactttttaaaagaataattactaaatttgggatgcttaa 18229707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 30501182 - 30501245
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||  |||||||| ||| |||||    
T  30501182 aatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30501245  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 30541525 - 30541588
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    |||| |||||||||||||||| ||||||||||||||| ||||||  |||||||| ||| |||||    
T  30541525 aatgtattggaaattgtaataattgactttttaaaagaataattactaaatttgggatgcttaa 30541588  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2918637 - 2918702
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||||||||||| ||||||||||| |||| |||  |||||| |||||||||| || |||||    
T  2918637 taaatgcattggaaattataatagttgacatttttaaaaaataattattaaatttgaaatgcttaa 2918702  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8208243 - 8208191
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||  ||||||||||| ||||||||||||||| |||||||| ||||||    
T  8208243 aatgcattaaaaattgtaataattgactttttaaaagaataattttcaaattt 8208191  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 30104868 - 30104833
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaa 56  Q
    |||||||||||||||||||| |||||||||||||||    
T  30104868 aatgcattggaaattgtaattgttgactttttaaaa 30104833  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34899176 - 34899221
Alignment:
Q  19 taaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||||||| |||||||||||| ||| ||||||||||| ||||||    
T  34899176 taaatgcattagaaattgtaataattgtctttttaaaagaataatt 34899221  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8221186 - 8221134
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaattt 73  Q
    ||||||||| || ||||||||||||||||||||| || ||||||  |||||||    
T  8221186 aatgcattgaaagttgtaatagttgactttttaagagaataattgctaaattt 8221134  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 39558808 - 39558852
Alignment:
Q  20 aaatgcattggaaattgtaatagttgactttttaaaagtataatt 64  Q
    |||||||||||||||||||| |||||| |||||||| | ||||||    
T  39558808 aaatgcattggaaattgtaacagttgaatttttaaatgaataatt 39558852  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 62567 - 62630
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaagtataatttttaaatttgagatacttaa 84  Q
    ||||||||| |||| |||||||||||||||||||||| ||||||  ||||| |||||| |||||    
T  62567 aatgcattgaaaatcgtaatagttgactttttaaaagaataattactaaatatgagatgcttaa 62630  T

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Target: scaffold1444 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 1746 - 1782
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaag 57  Q
    ||||||||||||||||||||||||| |||||||||||    
T  1746 aatgcattggaaattgtaatagttggctttttaaaag 1782  T

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Target: scaffold1444; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 978 - 1010
Alignment:
Q  25 cattggaaattgtaatagttgactttttaaaag 57  Q
    ||||| |||||||||||||||||||||||||||    
T  978 cattgaaaattgtaatagttgactttttaaaag 1010  T

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Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 1462 - 1422
Alignment:
Q  31 aaattgtaatagttgactttttaaaagtataatttttaaat 71  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  1462 aaattgtaatagttgactttttaaaagaataattattaaat 1422  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 38187 - 38154
Alignment:
Q  24 gcattggaaattgtaatagttgactttttaaaag 57  Q
    ||||| ||||||||||||||||||||||||||||    
T  38187 gcattagaaattgtaatagttgactttttaaaag 38154  T

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Target: scaffold0268 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 20290 - 20326
Alignment:
Q  21 aatgcattggaaattgtaatagttgactttttaaaag 57  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  20290 aatgcatttgaaattgtaatagttaactttttaaaag 20326  T

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